FC921187

Overview
NameFC921187
Unique NameFC921187
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921187 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.286e-39
Identity = 82/158 (51.90%), Postives = 111/158 (70.25%), Query Frame = 1
Query:  187 LQPIKSSRPNNLSISASA---SPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYEL-SKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELDIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFN 648
            + P+KS + +N +++  A    P  +L   KF PIKE  V R M RRY  DM   A +D    GAGSAGLSCAY L +  P+++I I+E +V+PGGG WL GQL SAMV RKPA  FLD++ + Y+++ ++VV+KHAALFTST++SK+LA PNVK+FN
Sbjct:   24 MDPLKSKQQSNATVNKPAFKPEPAVNLTPIKFAPIKEHQVQRAMVRRYFQDMEERAISDVIIVGAGSAGLSCAYALGTARPDLKITILESNVAPGGGCWLGGQLMSAMVCRKPADEFLDQVGVPYEDEGNFVVVKHAALFTSTVLSKVLAMPNVKMFN 181          
BLAST of FC921187 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.699e-13
Identity = 42/123 (34.15%), Postives = 68/123 (55.28%), Query Frame = 1
Query:  280 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELDIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFN 648
            +K+ ++SR +   Y  D++   + D    GAG +G+   Y L+K    ++AI E+ +S GGG W  G  F+ +VV++ A   LDE DI Y+E +    +  A    +TI SK + +  VK+FN
Sbjct:    2 LKDVVISRAIVESYFKDLLNNLELDVAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKIVVQEEAKEILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFN 122          
BLAST of FC921187 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.525e-13
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 1
Query:  280 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELDIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFN 648
            ++E  +SR +   Y  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W  G  F+ +VV++ A   LDE DI Y+E +    +  A    +TI SK + +  VK+FN
Sbjct:    2 LREVTISRAIIESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQEEAREILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFN 122          
BLAST of FC921187 vs. ExPASy Swiss-Prot
Match: THI4_THEMA (Putative thiazole biosynthetic enzyme OS=Thermotoga maritima GN=TM_0787 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.604e-13
Identity = 33/99 (33.33%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  280 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELDIDYDEQDSYVVI 576
            +++ ++SR +  RY   +    + D    GAG +GL+ AYEL+KN   ++A+ E+  +PGGG W  G +F+ +V+ K    FL E++I+Y+ ++ ++V+
Sbjct:    3 MRDVLISRLIVERYFEKLRNSLELDVAIVGAGPSGLTAAYELAKN-GFRVAVFEERNTPGGGIWGGGMMFNEIVLEKELENFLKEVEIEYEVKEDHIVV 100          
BLAST of FC921187 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.898e-12
Identity = 41/123 (33.33%), Postives = 67/123 (54.47%), Query Frame = 1
Query:  280 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELDIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFN 648
            ++E  ++R +   Y  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W  G  F+ +VV+  A   LDE  I Y+E +    +  A    +TI SK++ +  VK+FN
Sbjct:    2 LREVTITRAIVESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQDEAREILDEFGIRYEEFEKGYYVADAIEVATTIASKVV-KSGVKIFN 122          
BLAST of FC921187 vs. ExPASy Swiss-Prot
Match: THI4_METTH (Putative thiazole biosynthetic enzyme OS=Methanobacterium thermoautotrophicum GN=MTH_1620 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.526e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 1
Query:  268 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELDIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFN 648
            K D IK   +SR +   YM D++ Y + D    G G +GL+  Y L++   +++A+ E+ +S GGG W  G +F+ +VV+      LDE  I  +  D    +  +   TST+ S+   +  +K+FN
Sbjct:    2 KLDDIK---ISRAIVEGYMEDLLDYMEMDVAIGGGGPSGLTAGYYLAR-AGLKVALFERKLSIGGGMWGGGMMFNKIVVQDEGREILDEFGIRSEPYDEGYHVADSVEATSTLCSR-ACQAGLKIFN 123          
BLAST of FC921187 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.309e-11
Identity = 35/98 (35.71%), Postives = 56/98 (57.14%), Query Frame = 1
Query:  268 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELDIDYDEQD 561
            +F  + E+ V+R + + +  + I   DT+    G G +GL  A EL++   + + I+E++   GGG WL G L + + VR PA   LDELD+ Y+E D
Sbjct:    5 EFADVSEAQVTRAIAKDWGNEFIDRVDTEVIIVGGGPSGLVTAKELAER-GVDVTIVEKNNYLGGGFWLGGFLMNKVTVRDPAQSVLDELDVPYEESD 101          
The following BLAST results are available for this feature:
BLAST of FC921187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
THI4_UROFA1.286e-3951.90Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI4_PYRFU2.699e-1334.15Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB3.525e-1334.96Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_THEMA4.604e-1333.33Putative thiazole biosynthetic enzyme OS=Thermotog... [more]
THI4_PYRHO3.898e-1233.33Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_METTH2.526e-1131.50Putative thiazole biosynthetic enzyme OS=Methanoba... [more]
THI4_HALWD4.309e-1135.71Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]

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Properties
Property NameValue
Genbank descriptionC32102B09EF RVDevelopN Citrus clementina cDNA clone C32102B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921187 ID=FC921187; Name=FC921187; organism=Citrus clementina; type=EST; length=649bp
TCATCACTGCTGCAAATCAAATTACTTCTCATTATCAAACTTCTAAGCAG
CAGGGGAAGGAGGGGTAAAAAAAAAAACATGGCAGCCATGGCTTCTACAG
CTTTCGCTCCTTCAGTTTCGTCTACCACCAATAAGCTCTTTGACTCATCC
TTTCATGGGGCTCCCATGTCACCTTCTCTTCTACGTCTTCAACCCATCAA
ATCTTCTCGTCCCAACAACTTGTCCATTTCTGCTTCTGCTTCTCCTCCTT
ATGACTTGAACACTTTCAAGTTTGACCCCATCAAAGAATCCATTGTTTCT
CGTGAAATGACGCGCAGGTACATGACGGACATGATCACTTATGCTGACAC
TGATGTGGTTGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTTGTGCTTATG
AGCTCAGCAAAAACCCCAACATTCAGATTGCTATTATCGAACAGTCTGTT
AGCCCCGGCGGTGGCGCGTGGCTCAGTGGACAGCTCTTCTCTGCCATGGT
TGTGCGCAAACCAGCCCACATCTTCCTTGACGAGCTTGACATCGACTACG
ATGAGCAAGACAGCTATGTTGTGATCAAGCATGCAGCGCTGTTCACCTCC
ACTATAATGAGCAAGCTCCTGGCCCGCCCCAACGTCAAGCTCTTTAATG
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