FC921188

Overview
NameFC921188
Unique NameFC921188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length746
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921188 vs. ExPASy Swiss-Prot
Match: MYRS2_ARATH (Myrcene/ocimene synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS24 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.869e-21
Identity = 63/193 (32.64%), Postives = 105/193 (54.40%), Query Frame = 2
Query:   68 VSASPNKVIRINAEKESTRRSANFDPTIWG-DYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEAL-TFTVTHLESF 640
            +S S  K +      +  RRS N+ P+ W   Y LS    +    +   +H  LKK+++ ML     K    KL+LIDD+Q+LGVSYHFE EI+ IL   H  N   ++   +  ++L+  +L+FRLLRQ+G+ +S D+F+   D   +  +F   +I  +++LYEA++L    +  L++ +  F    + +F
Sbjct:   29 ISKSMTKTMPDANPLDLRRRSGNYQPSSWDHSYLLSIENKYVNEKEVITRHV-LKKKVKKMLEEVETKSRLEKLELIDDLQKLGVSYHFEQEINNILTNFHLENGK-NIWKCDKEEDLHATALEFRLLRQHGFGVSEDIFDVIIDKIES-NTFKSDNITSIITLYEASYLSTKSDTKLHKVIRPFATEQIRNF 218          
BLAST of FC921188 vs. ExPASy Swiss-Prot
Match: CINS_ARATH (1,8-cineole synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.869e-21
Identity = 60/167 (35.93%), Postives = 101/167 (60.48%), Query Frame = 2
Query:  113 ESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMH-EANQDCDLGDDENVQELYYISLQFRLLRQNGYKISADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEAL 610
            E +RRS N+ P+ W   +L    +   S    +    LKK++++ML  D  K    +L+LIDD+Q+LGVSYHFE EI++ L  +H +  ++C   D E  ++L+  SL+FRLLRQ+G+ +S ++F+   D   +  +F   +I G++SLYEA++L    +  L++ +
Sbjct:   44 ELSRRSGNYQPSPWNHCYLLSIENKYASETEVITRDVLKKKVKSMLD-DEKKSRLEQLELIDDLQKLGVSYHFEIEINDTLTDLHLKMGRNCWKCDKE--EDLHATSLEFRLLRQHGFDVSENIFDVIIDQIES-NTFKTNNINGIISLYEASYLSTKSDTKLHKVI 206          
BLAST of FC921188 vs. ExPASy Swiss-Prot
Match: SSS_SALOF ((+)-sabinene synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.666e-21
Identity = 63/172 (36.63%), Postives = 98/172 (56.98%), Query Frame = 2
Query:  122 RRSANFDPTIWG-DYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISADVFNSFK-DSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHL 631
            RRS ++ P++W  +Y  S    +KE    + +  EL  ++R +L+  +    Q  L+LIDD+Q LG+SY F+ EI +IL  +H   +     D      LY+ +L FR+LRQ+G+ +S DVF+ FK +   +F + L +D +GML LYEA+ L   GE+ L  A  F+   L
Sbjct:   52 RRSGDYQPSLWDFNYIQSLNTPYKEQRHFN-RQAELIMQVRMLLKVKMEAIQQ--LELIDDLQYLGLSYFFQDEIKQILSSIHNEPRYFHNND------LYFTALGFRILRQHGFNVSEDVFDCFKIEKCSDFNANLAQDTKGMLQLYEASFLLREGEDTLELARRFSTRSL 214          
BLAST of FC921188 vs. ExPASy Swiss-Prot
Match: SCS_SALOF (1,8-cineole synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.308e-20
Identity = 61/182 (33.52%), Postives = 103/182 (56.59%), Query Frame = 2
Query:   92 IRINAEKESTRRSANFDPTIWGDYFLS-YTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISADVFNSFKDSNG-NFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHL 631
            +++  E ++ RR+  + PT+W    +  +  ++KE     ++   +  ++  +L+ +++  S  +L+LIDD++RLG+S HF+ EI EIL   +  N + D  D      LY  +L+F+LLRQ  + +S +VF+ FK+  G +FK  L  D RG+L LYEA+ L   GE  L+ A  F    L
Sbjct:   47 LQMGNEIQTGRRTGGYQPTLWDFSTIQLFDSEYKEEKHL-MRAAGMIAQVNMLLQEEVD--SIQRLELIDDLRRLGISCHFDREIVEILNSKYYTNNEIDESD------LYSTALRFKLLRQYDFSVSQEVFDCFKNDKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLHLARDFATKFL 219          
BLAST of FC921188 vs. ExPASy Swiss-Prot
Match: GBIS1_ARATH ((Z)-gamma-bisabolene synthase 1 OS=Arabidopsis thaliana GN=TPS12 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.708e-20
Identity = 63/163 (38.65%), Postives = 95/163 (58.28%), Query Frame = 2
Query:  152 WGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRAD-INKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLES 637
            W DYFLS   D  E    + +   LK E+  +L +   ++ S+ K+ LI  +  LG+++HFE+EI  IL+  H   +  D+  DE  ++L  IS+ FR+ R  G+ + + VF  F   +G F+  L  D +G+LSLYEAAHL    + IL+EAL FT +HL+S
Sbjct:   22 WTDYFLSVPIDESELDVITREIDILKPEVMELLSSQGDDETSKRKVLLIQLLLSLGLAFHFENEIKNILE--HAFRKIDDITGDE--KDLSTISIMFRVFRTYGHNLPSSVFKRFTGDDGKFQQSLTEDAKGILSLYEAAHLGTTTDYILDEALKFTSSHLKS 180          
BLAST of FC921188 vs. ExPASy Swiss-Prot
Match: LINS_ARATH (Linalool synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS14 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.206e-19
Identity = 70/243 (28.81%), Postives = 114/243 (46.91%), Query Frame = 2
Query:   14 SNLKCL*QAIEIKDMSFPVSASPNKVIRI---NAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTKPIQHSTCGSSQSCPQSTYSQSLPG*RQNT 733
            S+  C   A      +F +S  PN V  +   N  K S  R+ +   +       + +  F         H+   K+I+ +L A+++ PS+  L++ID IQ LG   HF   I++ L  +++     + GD      L+ I+L+FRLLRQ G+ +   +F +  D  G FK  +K D++G+  L+EA+ LRV GE  L+ A  FT + L        +  C   +S  +    +SL   R  T
Sbjct:    9 SSRSCFVSAYPNNSPTFLISKFPNTVDSLSPANTAKRSILRNVHASVS-------NPSKQFHNKTSLEYSHELNIKKIKNILSANVDVPSEN-LEMIDVIQSLGTDLHFRQGIEQTLHMIYKEGLQFN-GD------LHEIALRFRLLRQEGHYVQESIFKNILDKKGGFKDVVKNDVKGLTELFEASELRVEGEETLDGAREFTYSRL--------NELCSGRESHQKQEIMKSLAQPRHKT 228          
BLAST of FC921188 vs. ExPASy Swiss-Prot
Match: TPSD6_ABIGR (Camphene synthase, chloroplastic OS=Abies grandis GN=ag6 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.954e-16
Identity = 64/215 (29.77%), Postives = 106/215 (49.30%), Query Frame = 2
Query:   68 VSASPNKVIRINAEKEST-RRSANFDPTIWGDYFLSY-------TGDFKESGDASVKHQELKKEIRTMLRA--DINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEA--NQDCDLGDDENVQELYYISLQFRLLRQNGYKISADVFNSFKDSNGNFKSF----LKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTKPIQHST 664
            V+ S N  +   A  +S  RR  N+   +W D F+           D++E  D  +      K+I    ++  D       +L L+DD++RLG+  HF+ EI   L  ++     +    G +  V +L   +L  R LR +GY +S+DV N FKD NG F S     ++ +IRG+L+L+ A+ +   GE +++EA TF+  +L    + I  S+
Sbjct:   40 VAHSINMCLTSVASTDSVQRRVGNYHSNLWDDDFIQSLISTPYGAPDYRERADRLIGEV---KDIMFNFKSLEDGGNDLLQRLLLVDDVERLGIDRHFKKEIKTALDYVNSYWNEKGIGCGRESVVTDLNSTALGLRTLRLHGYTVSSDVLNVFKDKNGQFSSTANIQIEGEIRGVLNLFRASLVAFPGEKVMDEAETFSTKYLREALQKIPASS 251          
BLAST of FC921188 vs. ExPASy Swiss-Prot
Match: TPSD1_ABIGR (Alpha-bisabolene synthase OS=Abies grandis GN=ag1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.813e-15
Identity = 52/143 (36.36%), Postives = 78/143 (54.55%), Query Frame = 2
Query:  281 KLDLIDDIQRLGVSYHFESEIDEILQKM--HEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISADVFNSFKDSNGNF---KSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHL-ESFTKPIQHSTCGSSQSCPQ 691
            +L ++D+I RLG+  HFE EI E L  +  H   +    G    + +L   +L FRLLR + Y +S  +F++FKD+NG F        +D+  ML+LY A+ L   GENIL+EA +F   +L E+  K    S   + Q+  Q
Sbjct:  301 RLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQ 443          
BLAST of FC921188 vs. ExPASy Swiss-Prot
Match: TPSDA_ABIGR (Limonene synthase, chloroplastic OS=Abies grandis GN=ag10 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.949e-14
Identity = 53/192 (27.60%), Postives = 92/192 (47.92%), Query Frame = 2
Query:  122 RRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQ--------TKLDLIDDIQRLGVSYHFESEIDEILQKMH---EANQDCDLGDDENVQELYYISLQFRLLRQNGYKISADVFNSFKDSNGNF--KSFLKRD--IRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTKPI 652
            RR A+  P +W D F+            S + + + +E++ M  +  N            T+L ++D I+RLG+  HF++EI   L  ++   +  +    G D    +L   +L  R LR +GY +S+DV   FKD  G+F   + L      R +L+LY A+ +   GE ++ EA  F+ ++L+   + I
Sbjct:   70 RRIADHHPNLWEDDFIQSLSSPYGGSSYSERAETVVEEVKEMFNSIPNNRELFGSQNDLLTRLWMVDSIERLGIDRHFQNEIRVALDYVYSYWKEKEGIGCGRDSTFPDLNSTALALRTLRLHGYNVSSDVLEYFKDEKGHFACPAILTEGQITRSVLNLYRASLVAFPGEKVMEEAEIFSASYLKKVLQKI 261          
BLAST of FC921188 vs. ExPASy Swiss-Prot
Match: TPSD3_ABIGR (Pinene synthase, chloroplastic OS=Abies grandis GN=ag3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.185e-13
Identity = 55/197 (27.92%), Postives = 94/197 (47.72%), Query Frame = 2
Query:  122 RRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTM----------LRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHE--ANQDCDLGDDENVQELYYISLQFRLLRQNGYKISADVFNSFKDSNGNFKSF----LKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTKPIQHST 664
            RR  +F   +W D  +       E      + ++L  E++ M          L + +N   Q +L ++D ++RLG+  HF+ EI   L  ++          G +  V +L   +L  R LR +GY +S+DVF +FK  NG F          +IRG+L+L+ A+ +   GE I++EA  F+  +L+   + I  S+
Sbjct:   64 RRMGDFHSNLWDDDVIQSLPTAYEEKSYLERAEKLIGEVKNMFNSMSLEDGELMSPLNDLIQ-RLWIVDSLERLGIHRHFKDEIKSALDYVYSYWGENGIGCGRESVVTDLNSTALGLRTLRLHGYPVSSDVFKAFKGQNGQFSCSENIQTDEEIRGVLNLFRASLIAFPGEKIMDEAEIFSTKYLKEALQKIPVSS 259          
The following BLAST results are available for this feature:
BLAST of FC921188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
MYRS2_ARATH5.869e-2132.64Myrcene/ocimene synthase 2, chloroplastic OS=Arabi... [more]
CINS_ARATH5.869e-2135.931,8-cineole synthase, chloroplastic OS=Arabidopsis... [more]
SSS_SALOF7.666e-2136.63(+)-sabinene synthase, chloroplastic OS=Salvia off... [more]
SCS_SALOF1.308e-2033.521,8-cineole synthase, chloroplastic OS=Salvia offi... [more]
GBIS1_ARATH1.708e-2038.65(Z)-gamma-bisabolene synthase 1 OS=Arabidopsis tha... [more]
LINS_ARATH4.206e-1928.81Linalool synthase, chloroplastic OS=Arabidopsis th... [more]
TPSD6_ABIGR1.954e-1629.77Camphene synthase, chloroplastic OS=Abies grandis ... [more]
TPSD1_ABIGR4.813e-1536.36Alpha-bisabolene synthase OS=Abies grandis GN=ag1 ... [more]
TPSDA_ABIGR6.949e-1427.60Limonene synthase, chloroplastic OS=Abies grandis ... [more]
TPSD3_ABIGR1.185e-1327.92Pinene synthase, chloroplastic OS=Abies grandis GN... [more]

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Properties
Property NameValue
Genbank descriptionC32102B11EF RVDevelopN Citrus clementina cDNA clone C32102B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921188 ID=FC921188; Name=FC921188; organism=Citrus clementina; type=EST; length=746bp
GAACTCAATTTGTAGCAACCTTAAATGCCTTTAGCAAGCAATAGAAATTA
AGGACATGTCGTTTCCGGTTTCAGCCTCTCCTAATAAAGTTATCCGAATA
AATGCAGAGAAAGAATCTACTCGTCGTTCGGCAAATTTTGATCCTACCAT
TTGGGGGGATTATTTCCTTTCATATACTGGTGACTTCAAGGAAAGTGGTG
ATGCTAGCGTGAAGCATCAAGAGCTGAAGAAAGAAATTAGAACGATGCTA
AGAGCTGATATCAACAAGCCTTCGCAGACTAAACTGGATTTGATTGATGA
CATTCAGCGTTTAGGAGTGTCTTATCATTTTGAAAGTGAGATTGATGAAA
TCTTGCAAAAAATGCATGAGGCTAACCAAGATTGTGATCTTGGCGATGAT
GAAAATGTTCAGGAGCTCTATTATATCTCTCTTCAGTTTCGATTACTTAG
ACAAAATGGCTATAAAATTTCTGCTGATGTCTTTAACAGCTTCAAGGATA
GCAATGGGAACTTCAAGTCTTTCCTTAAAAGAGATATTCGGGGAATGTTA
AGCCTGTATGAAGCGGCACATCTCAGGGTACATGGAGAAAATATACTCAA
CGAAGCACTTACTTTCACTGTCACTCACCTTGAGTCATTTACAAAGCCAA
TCCAACACTCAACTTGCGGCTCAAGTCAATCGTGCCCTCAATCGACCTAT
TCGCAAAGCTTACCAGGCTAGAGGCAAAACACTACATGCCATCTAT
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