FC921244

Overview
NameFC921244
Unique NameFC921244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10201 contig Ccv1_Contig10201:6..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_BACC1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain ATCC 10987) GN=ispF PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.156e-33
Identity = 63/120 (52.50%), Postives = 87/120 (72.50%), Query Frame = 2
Query:  308 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 667
            FR+G GFD+H    G PLIIGG+ +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGVTIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELL 121          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_AQUAE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Aquifex aeolicus GN=ispF PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.156e-33
Identity = 61/123 (49.59%), Postives = 88/123 (71.54%), Query Frame = 2
Query:  302 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLG 670
            +  R+G GFD H    G  LI+GG+ +  + G + HSDGD LLH + DAILGALG  DIG+IF D+DP+WK APS +F+++A+ +M E G+ I N+D  ++  RPK++P+KE I+ +LS+LLG
Sbjct:    1 MELRIGFGFDSHEFVEGKLLILGGVEIEKDYGLKGHSDGDALLHAITDAILGALGERDIGEIFKDTDPRWKNAPSRIFLEKALEVMSEKGFNISNIDCVIVADRPKIAPHKERIKESLSKLLG 123          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_BACC4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain B4264) GN=ispF PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.734e-33
Identity = 64/120 (53.33%), Postives = 87/120 (72.50%), Query Frame = 2
Query:  308 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 667
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWGFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELL 121          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_THISH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=ispF PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.149e-32
Identity = 60/120 (50.00%), Postives = 88/120 (73.33%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLG 670
            R+GHG+D+H  + G  +++GG+ +PH +   AHSDGDVL+H + DA+LGA  L DIG+ FPD+DP +KGA S V ++  V L+ E GY +GN+DAT+I Q PK++P+ E +R NL++ LG
Sbjct:    5 RIGHGYDVHAFKAGGHVVLGGVRIPHAKAFAAHSDGDVLIHALCDALLGAAALGDIGRHFPDTDPAYKGADSRVLLRRVVELLHEQGYRVGNVDATIIAQAPKMAPHIEAMRANLADDLG 124          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_GEOMG (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=ispF PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.500e-32
Identity = 65/122 (53.28%), Postives = 90/122 (73.77%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGAD 676
            R+GHG+D+H L  G  LI+GG++VP+ERG   HSD DVLLH + DAILGAL L DIG+ FPD+DP++KGA S   ++  + L  + GY +GN+DAT++ QRPKL+P+   +R NL+E L A+
Sbjct:    2 RIGHGYDVHCLVEGRKLILGGVDVPYERGLLGHSDADVLLHAIADAILGALALGDIGKHFPDTDPQFKGADSRKLLRHVMALAGQKGYVLGNVDATIVAQRPKLAPFIPEMRANLAEDLIAE 123          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_RALEH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=ispF PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.959e-32
Identity = 68/125 (54.40%), Postives = 89/125 (71.20%), Query Frame = 2
Query:  302 LPF--RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLG 670
            +PF  RVG G+D+H L PG  LI+GG+ +PH+RG   HSD D LLH V DA+ GA  L DIG+ FPD+D ++ GA S V ++EA R + EAGYEIGN+DAT+I Q PKL+P+   +  NL+E LG
Sbjct:    2 MPFDIRVGQGYDVHALVPGRKLILGGVEIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHFPDTDAQFAGADSRVLLREAARRVREAGYEIGNVDATVIAQAPKLAPHIGAMVANLAEDLG 126          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_PECCP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ispF PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.959e-32
Identity = 62/117 (52.99%), Postives = 88/117 (75.21%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSE 661
            R+GHGFD+H+     PL+IGG+ +P+ +G  AHSDGDV+LH V DA+LGA  L DIG++FPD+DP +KGA S   ++EA R ++E GY++GNLD T+I Q PK++P+   +R NL+E
Sbjct:    2 RIGHGFDVHKFGGEGPLVIGGVRIPYTQGLLAHSDGDVVLHAVTDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAWRRINEKGYQLGNLDVTIIAQAPKMAPHIPQMRVNLAE 118          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_BACCN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=ispF PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.959e-32
Identity = 63/120 (52.50%), Postives = 87/120 (72.50%), Query Frame = 2
Query:  308 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 667
            FR+G GFD+H    G PLIIGGI +P+E+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPYEKGLLGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELL 121          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_RALSO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia solanacearum GN=ispF PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.559e-32
Identity = 64/126 (50.79%), Postives = 88/126 (69.84%), Query Frame = 2
Query:  302 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADP 679
            +  R+G G+D+H L  G  LI+GG+ +PH RG   HSD D LLH + DA+ GA GL DIG+ FPD+DP + GA S V ++EAVR + EAGY++GN+DAT+I Q+PKL+P+   +  NL+  LG  P
Sbjct:    4 MDIRIGQGYDVHALVEGRKLILGGVEIPHTRGLLGHSDADALLHAITDALFGAAGLGDIGRHFPDTDPAFAGADSRVLLREAVRRVREAGYDVGNVDATVIAQKPKLAPHVPGMVANLAADLGIAP 129          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_RALPJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia pickettii (strain 12J) GN=ispF PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.559e-32
Identity = 64/126 (50.79%), Postives = 88/126 (69.84%), Query Frame = 2
Query:  302 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADP 679
            +  R+G G+D+H L  G  LI+GG+ +PH RG   HSD D LLH + DA+ GA GL DIG+ FPD+DP + GA S V ++EAVR + +AGY +GN+DAT+I Q+PKL+P+   +  NL+E LG  P
Sbjct:    4 MDIRIGQGYDVHALVEGRKLILGGVEIPHTRGLLGHSDADALLHAITDALFGAAGLGDIGRHFPDTDPAFAGADSRVLLREAVRRVHKAGYAVGNVDATVIAQKPKLAPHVPGMVANLAEDLGIAP 129          
The following BLAST results are available for this feature:
BLAST of FC921244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_BACC15.156e-3352.502-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_AQUAE5.156e-3349.592-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACC46.734e-3353.332-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_THISH1.149e-3250.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOMG1.500e-3253.282-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RALEH1.959e-3254.402-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PECCP1.959e-3252.992-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACCN1.959e-3252.502-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RALSO2.559e-3250.792-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RALPJ2.559e-3250.792-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC32102G10EF RVDevelopN Citrus clementina cDNA clone C32102G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921244 ID=FC921244; Name=FC921244; organism=Citrus clementina; type=EST; length=748bp
TTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTCTCTCC
TCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATACACC
ACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCTCCTCC
GTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACAACAC
AGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTTCTTCC
ATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAAAATC
ACTGCCCTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAGCCTG
GCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGC
GAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATGCAAT
TTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGATTCTG
ATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTG
AGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCACGCT
GATTCTTCAAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGAACCA
ACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAATCTGAAGCGAAA
CTCATGAAAAAGTGATAGCCTGGTGAAATCGAGTATGCACTCAACGTG
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