FC921244
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_PELCD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=ispF PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.559e-32 Identity = 64/122 (52.46%), Postives = 86/122 (70.49%), Query Frame = 2 Query: 311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGAD 676 R+GHG+D+H+L LI+GG+++PH G HSD DVLLH + DAILGALG DIG+ FPD+DP +KG S + E +RL + GY +GNLDAT+I QRPKL+P+ +R N++E G D Sbjct: 3 RIGHGYDVHQLVAERKLILGGVDIPHTLGLLGHSDADVLLHAICDAILGALGEGDIGKHFPDTDPAYKGISSIKLLHEVMRLAETKGYRLGNLDATIIAQRPKLAPFIGNMRENIAEACGTD 124
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_RALEJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia eutropha (strain JMP134) GN=ispF PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 3.342e-32 Identity = 65/125 (52.00%), Postives = 92/125 (73.60%), Query Frame = 2 Query: 302 LPF--RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLG 670 +PF RVG G+D+H L PG LI+GG+++PH+RG HSD D LLH + DA+ GA GL DIG+ FPD+D ++ GA S V ++EA R + EAGYEIGN+DA++I Q+PKL+P+ + N+++ LG Sbjct: 2 MPFDIRVGQGYDVHALVPGRKLILGGVHIPHDRGLLGHSDADALLHAITDALFGAAGLGDIGRHFPDTDAQFAGADSRVLLREAARRVREAGYEIGNVDASVIAQQPKLAPHIPGMVANIADDLG 126
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_BORA1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bordetella avium (strain 197N) GN=ispF PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 3.342e-32 Identity = 65/123 (52.85%), Postives = 87/123 (70.73%), Query Frame = 2 Query: 302 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLG 670 +PFRVG GFD+H L G PLIIGG+ + H G HSD DVLLH V DAILGA GL DIG+ FPD+DP++KGA S V ++EA+ +D AG+++ N+DAT+ Q PK+ P+ + N++ LG Sbjct: 3 IPFRVGQGFDVHALVTGRPLIIGGVRIEHSHGLLGHSDADVLLHAVTDAILGAAGLGDIGRHFPDTDPRFKGADSRVLLREAMARVDAAGWQVVNVDATVHAQAPKIGPHAPAMVANIAADLG 125
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_HAHCH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Hahella chejuensis (strain KCTC 2396) GN=ispF PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 4.365e-32 Identity = 60/118 (50.85%), Postives = 87/118 (73.73%), Query Frame = 2 Query: 308 FRVGHGFDLHRL-EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 658 FR+GHGFD+H E G ++IGG+N+PHERG +AHSDGDVLLH + DA+LGA DIG+ FPD+DP + GA S ++ V + + GY+IGN+D T++ Q PK++P+ E++R N++ Sbjct: 4 FRIGHGFDVHAFSETGDLIVIGGVNIPHERGLQAHSDGDVLLHAICDALLGAAAFGDIGKHFPDTDPSFSGADSRNLLRSVVSKLHQKGYKIGNIDGTIVAQAPKMAPHIESMRVNIA 121
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_ERWCT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Erwinia carotovora subsp. atroseptica GN=ispF PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 4.365e-32 Identity = 61/117 (52.14%), Postives = 88/117 (75.21%), Query Frame = 2 Query: 311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSE 661 R+GHGFD+H+ PL+IGG+ +P+ +G AHSDGDV+LH V DA+LGA L DIG++FPD+DP +KGA S ++EA R +++ GY++GNLD T+I Q PK++P+ +R NL+E Sbjct: 2 RIGHGFDVHKFGGEGPLVIGGVRIPYTQGLLAHSDGDVVLHAVTDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAWRRINDKGYQLGNLDVTIIAQAPKMAPHIPQMRVNLAE 118
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_SALRD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salinibacter ruber (strain DSM 13855) GN=ispF PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.701e-32 Identity = 62/119 (52.10%), Postives = 83/119 (69.75%), Query Frame = 2 Query: 311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 667 R+G G+D+HRL G PLI+GG+ VPH+RG HSD DVLLH V DA+LGA L D+G FPD+D KWK A S ++ V + AGY N+DAT++L+RPKL P+ + +RTN++ L Sbjct: 2 RIGFGYDVHRLVEGRPLILGGVQVPHDRGLAGHSDADVLLHAVADALLGAAALGDLGAHFPDTDAKWKDADSQALLRRVVERVQHAGYAPHNVDATVLLERPKLRPHVDEMRTNIARAL 120
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_PSEAB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ispF PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 9.724e-32 Identity = 59/120 (49.17%), Postives = 90/120 (75.00%), Query Frame = 2 Query: 311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLG 670 R+GHG+D+HR G + +GG+ +PH+ G AHSDGDVLLH + DA+LGA L DIG+ FPD+DP++KGA S ++ V ++ E G+++GN+DAT++ Q PK++P+ ET+R +++E LG Sbjct: 2 RIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGSIAEDLG 121
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_SOLUE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Solibacter usitatus (strain Ellin6076) GN=ispF PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.270e-31 Identity = 65/122 (53.28%), Postives = 84/122 (68.85%), Query Frame = 2 Query: 311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGAD 676 R G G+D+HR+ G +I+GG+ VP E G E HSD DVL H + DAILGA L DIG FPDSDP+WKG S VF++ A L + GY I N+D+T+IL+RPKL +++TIR L+E L D Sbjct: 5 RTGLGWDVHRIATGRKMILGGVTVPCEFGLEGHSDADVLAHAITDAILGAAALGDIGMHFPDSDPRWKGCDSLVFLRHARDLATQKGYRIVNVDSTIILERPKLKDFRQTIRERLAETLELD 126
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_PROMH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Proteus mirabilis (strain HI4320) GN=ispF PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.270e-31 Identity = 61/117 (52.14%), Postives = 85/117 (72.65%), Query Frame = 2 Query: 311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSE 661 R+GHG+D+H+ P+IIGG+ +P+E+G AHSDGDV+LH V DAILGA+ + DIG +FPD+DP +KGA S V ++EA + GY IGNLD T+I Q PK+ P+ +R N++E Sbjct: 2 RIGHGYDVHKFGGEGPIIIGGVRIPYEQGLLAHSDGDVVLHAVTDAILGAVAMGDIGTLFPDTDPAYKGADSRVLLREAFSRVMAKGYRIGNLDVTIIAQAPKMLPHTPQMRVNIAE 118
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_GEOSW (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacillus sp. (strain WCH70) GN=ispF PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.270e-31 Identity = 61/120 (50.83%), Postives = 88/120 (73.33%), Query Frame = 2 Query: 308 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 667 FR+G GFD+H+L G PLIIGG+ +P+E+G HSD DVLLH V DA LGA+G DIG+ FPD+D +K A S++ +K+ L+ + GYE+ NLD T+I Q+PK++P+ E ++ N++ LL Sbjct: 2 FRIGQGFDVHQLVEGRPLIIGGVRIPYEKGLLGHSDADVLLHAVADACLGAIGAGDIGKHFPDTDECYKDADSALLLKQVWELVKQQGYELANLDCTIIAQKPKMAPHIEQMKENIANLL 121 The following BLAST results are available for this feature:
BLAST of FC921244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921244 ID=FC921244; Name=FC921244; organism=Citrus clementina; type=EST; length=748bpback to top |