FC921244
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_PSYA2 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=ispF PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.228e-19 Identity = 48/126 (38.10%), Postives = 73/126 (57.94%), Query Frame = 2 Query: 311 RVGHGFDLHRL----EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGAD 676 ++G G D+H + +++ G+ + H AHSDGDV+LH + DA+LGAL L DIGQ FPD+D G S V ++ + AGY +GN D T++ +RPKL+ + +R N++ L D Sbjct: 5 KIGQGIDVHAFHNNGQQQQYVVLAGVPIEHTHSLLAHSDGDVVLHALADALLGALALGDIGQHFPDTDAANAGLDSRVLLRYVYGKVLAAGYMLGNADITVMCERPKLAVHNLAMRANIASDLQTD 130
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_CORGB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium glutamicum (strain R) GN=ispF PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.228e-19 Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = 2 Query: 311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 673 RVG D H++E G P I + GCE HSDGDV+ H +VDA+L A GL D+G P++ G + +KE L++ G+ IGN+ A L+ Q PK P +E + +S+++GA Sbjct: 8 RVGIATDAHQIEAGKPCWIACLLFEGVDGCEGHSDGDVIAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLKEVRELLESRGFVIGNVAAQLVGQTPKFGPRREEAQQVISDIIGA 128
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_PROAC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Propionibacterium acnes GN=ispF PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.103e-18 Identity = 46/125 (36.80%), Postives = 70/125 (56.00%), Query Frame = 2 Query: 302 LPFRVGHGFDLHRLEPGYPLIIGGINVPHER-GCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 673 + R G G D+H+L G P+ + G++ P E G HSDGDV H + DA+L A GL DIG IF +DP+W GA + V L+ G+ I N+ ++ QRP+++ + L++ +GA Sbjct: 2 IEIRTGIGTDVHQLSAGVPMHVAGLSFPDETVGLVGHSDGDVACHAICDALLSATGLGDIGSIFGTADPQWAGAAGVALLGHVVALVTGEGWTIQNVAVQVVGQRPRMAARRAEAEAALAQTVGA 126
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_PLAFX (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Plasmodium falciparum (isolate HB3) GN=ISPF PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.587e-18 Identity = 52/141 (36.88%), Postives = 81/141 (57.45%), Query Frame = 2 Query: 311 RVGHGFDLHR---LEPGY----------------PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGAD 676 R+G G+D+H+ L+ Y L +GG+ + + +HSDGD++ H +VD+ILGALG DIG +FPD D K K S++F++ A L+ + Y+IGN+D +I Q PK+S ++ I N+S +L D Sbjct: 65 RIGQGYDIHKIKVLDEEYNTYANNDFNKNEQSFKTLTLGGVKINNVLVL-SHSDGDIIYHSIVDSILGALGSLDIGTLFPDKDEKNKNKNSAIFLRYARLLIYKKNYDIGNVDINVIAQVPKISNIRKNIIKNISTVLNID 204
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_PLAF7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Plasmodium falciparum (isolate 3D7) GN=ISPF PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.587e-18 Identity = 52/141 (36.88%), Postives = 81/141 (57.45%), Query Frame = 2 Query: 311 RVGHGFDLHR---LEPGY----------------PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGAD 676 R+G G+D+H+ L+ Y L +GG+ + + +HSDGD++ H +VD+ILGALG DIG +FPD D K K S++F++ A L+ + Y+IGN+D +I Q PK+S ++ I N+S +L D Sbjct: 65 RIGQGYDIHKIKVLDEEYNTYANNDFNKNEQSFKTLTLGGVKINNVLVL-SHSDGDIIYHSIVDSILGALGSLDIGTLFPDKDEKNKNKNSAIFLRYARLLIYKKNYDIGNVDINVIAQVPKISNIRKNIIKNISTVLNID 204
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_COREF (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium efficiens GN=ispF PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.780e-17 Identity = 47/121 (38.84%), Postives = 67/121 (55.37%), Query Frame = 2 Query: 311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 673 RVG D H++E G P I + GCE HSDGDV+ H +VDA+L A GL D+G P++ G + + E L+ G+ IGN+ A L+ Q PK P +E + +S++LGA Sbjct: 19 RVGIASDAHQIEAGKPCWIACLLFDGVDGCEGHSDGDVVAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLIEVRELLITRGFTIGNVAAQLVGQTPKFGPRREEAQQVISDILGA 139
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_FRASC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia sp. (strain CcI3) GN=ispF PE=3 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 2.325e-17 Identity = 47/125 (37.60%), Postives = 68/125 (54.40%), Query Frame = 2 Query: 311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPL 685 RVG G D+H G P + + P E G HSDGDV H DA+L A L D+G++F P++ GA +V + E RL+ AG+ IGN+ +I RP+++ +E + +S LGA L Sbjct: 8 RVGVGVDVHPFAAGRPCWVACLEWPGETGLAGHSDGDVAAHAACDALLTASCLGDLGRVFGTDRPEYAGASGAVLLAETARLLGAAGWAIGNVSVQVIGNRPRMAGRREDAQKAMSVALGASVSL 132
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_KOSOT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=ispF PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 3.037e-17 Identity = 52/123 (42.28%), Postives = 76/123 (61.79%), Query Frame = 2 Query: 308 FRVGHGFDLHRLEPGYP-LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAG-YEIGNLDATLILQRPKLSPYKETIRTNLSELLG 670 +RVG GFD H LE L +GG+ V E HSDGD L+H +VDAILGA +IG FP+++ +G S+ F+ E +R AG YEI N+D+ +I+ + +++P+ E IR L+ +LG Sbjct: 2 YRVGIGFDAHPLEANKKGLYLGGVKVSEEYSSIGHSDGDALIHAIVDAILGATNAGNIGIWFPENEEN-RGRRSTEFL-EIIRKKILAGKYEILNIDSVIIIDKVRMNPHIENIRLKLARILG 122
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_SALTO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ispF PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.966e-17 Identity = 45/121 (37.19%), Postives = 63/121 (52.07%), Query Frame = 2 Query: 311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 673 RV G D+H E G P + G++ P + G HSD DV H +A+L A L D+G F P+W GA + E+ R + AGY IGN+ +I RPK+ P + + LS +GA Sbjct: 6 RVAIGVDMHAFESGRPCWVAGLHWPGQDGLAGHSDADVAAHAACNALLSAAELGDLGANFGVGQPEWSGASGVALLSESARRVRTAGYTIGNVSVQVIGNRPKIGPRRAEAQQVLSAAVGA 126
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_KINRD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=ispF PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.180e-17 Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = 2 Query: 311 RVGHGFDLHRLEPGYPLIIGGINVPHER-GCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 673 RVG G D+H+L G P + G+ E G E HSDGDV H DA+ A GL D+G F + P++ GA + + EA RL+ EAG+EIGN+ ++ RPK+ + + LS GA Sbjct: 6 RVGTGVDVHQLVAGRPCWVAGLLWEGEAAGPEGHSDGDVAAHACCDALFAAAGLGDLGAHFGTARPEFAGASGARLLAEAARLVREAGFEIGNVSVQVVGNRPKVGRRRAEAQAALSRACGA 127 The following BLAST results are available for this feature:
BLAST of FC921244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921244 ID=FC921244; Name=FC921244; organism=Citrus clementina; type=EST; length=748bpback to top |