FC921244

Overview
NameFC921244
Unique NameFC921244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10201 contig Ccv1_Contig10201:6..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_PSYA2 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=ispF PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.228e-19
Identity = 48/126 (38.10%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  311 RVGHGFDLHRL----EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGAD 676
            ++G G D+H      +    +++ G+ + H     AHSDGDV+LH + DA+LGAL L DIGQ FPD+D    G  S V ++     +  AGY +GN D T++ +RPKL+ +   +R N++  L  D
Sbjct:    5 KIGQGIDVHAFHNNGQQQQYVVLAGVPIEHTHSLLAHSDGDVVLHALADALLGALALGDIGQHFPDTDAANAGLDSRVLLRYVYGKVLAAGYMLGNADITVMCERPKLAVHNLAMRANIASDLQTD 130          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_CORGB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium glutamicum (strain R) GN=ispF PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.228e-19
Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 673
            RVG   D H++E G P  I  +      GCE HSDGDV+ H +VDA+L A GL D+G       P++ G   +  +KE   L++  G+ IGN+ A L+ Q PK  P +E  +  +S+++GA
Sbjct:    8 RVGIATDAHQIEAGKPCWIACLLFEGVDGCEGHSDGDVIAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLKEVRELLESRGFVIGNVAAQLVGQTPKFGPRREEAQQVISDIIGA 128          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_PROAC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Propionibacterium acnes GN=ispF PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.103e-18
Identity = 46/125 (36.80%), Postives = 70/125 (56.00%), Query Frame = 2
Query:  302 LPFRVGHGFDLHRLEPGYPLIIGGINVPHER-GCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 673
            +  R G G D+H+L  G P+ + G++ P E  G   HSDGDV  H + DA+L A GL DIG IF  +DP+W GA     +   V L+   G+ I N+   ++ QRP+++  +      L++ +GA
Sbjct:    2 IEIRTGIGTDVHQLSAGVPMHVAGLSFPDETVGLVGHSDGDVACHAICDALLSATGLGDIGSIFGTADPQWAGAAGVALLGHVVALVTGEGWTIQNVAVQVVGQRPRMAARRAEAEAALAQTVGA 126          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_PLAFX (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Plasmodium falciparum (isolate HB3) GN=ISPF PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.587e-18
Identity = 52/141 (36.88%), Postives = 81/141 (57.45%), Query Frame = 2
Query:  311 RVGHGFDLHR---LEPGY----------------PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGAD 676
            R+G G+D+H+   L+  Y                 L +GG+ + +     +HSDGD++ H +VD+ILGALG  DIG +FPD D K K   S++F++ A  L+ +  Y+IGN+D  +I Q PK+S  ++ I  N+S +L  D
Sbjct:   65 RIGQGYDIHKIKVLDEEYNTYANNDFNKNEQSFKTLTLGGVKINNVLVL-SHSDGDIIYHSIVDSILGALGSLDIGTLFPDKDEKNKNKNSAIFLRYARLLIYKKNYDIGNVDINVIAQVPKISNIRKNIIKNISTVLNID 204          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_PLAF7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Plasmodium falciparum (isolate 3D7) GN=ISPF PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.587e-18
Identity = 52/141 (36.88%), Postives = 81/141 (57.45%), Query Frame = 2
Query:  311 RVGHGFDLHR---LEPGY----------------PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGAD 676
            R+G G+D+H+   L+  Y                 L +GG+ + +     +HSDGD++ H +VD+ILGALG  DIG +FPD D K K   S++F++ A  L+ +  Y+IGN+D  +I Q PK+S  ++ I  N+S +L  D
Sbjct:   65 RIGQGYDIHKIKVLDEEYNTYANNDFNKNEQSFKTLTLGGVKINNVLVL-SHSDGDIIYHSIVDSILGALGSLDIGTLFPDKDEKNKNKNSAIFLRYARLLIYKKNYDIGNVDINVIAQVPKISNIRKNIIKNISTVLNID 204          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_COREF (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium efficiens GN=ispF PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.780e-17
Identity = 47/121 (38.84%), Postives = 67/121 (55.37%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 673
            RVG   D H++E G P  I  +      GCE HSDGDV+ H +VDA+L A GL D+G       P++ G   +  + E   L+   G+ IGN+ A L+ Q PK  P +E  +  +S++LGA
Sbjct:   19 RVGIASDAHQIEAGKPCWIACLLFDGVDGCEGHSDGDVVAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLIEVRELLITRGFTIGNVAAQLVGQTPKFGPRREEAQQVISDILGA 139          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_FRASC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia sp. (strain CcI3) GN=ispF PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.325e-17
Identity = 47/125 (37.60%), Postives = 68/125 (54.40%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPL 685
            RVG G D+H    G P  +  +  P E G   HSDGDV  H   DA+L A  L D+G++F    P++ GA  +V + E  RL+  AG+ IGN+   +I  RP+++  +E  +  +S  LGA   L
Sbjct:    8 RVGVGVDVHPFAAGRPCWVACLEWPGETGLAGHSDGDVAAHAACDALLTASCLGDLGRVFGTDRPEYAGASGAVLLAETARLLGAAGWAIGNVSVQVIGNRPRMAGRREDAQKAMSVALGASVSL 132          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_KOSOT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=ispF PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.037e-17
Identity = 52/123 (42.28%), Postives = 76/123 (61.79%), Query Frame = 2
Query:  308 FRVGHGFDLHRLEPGYP-LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAG-YEIGNLDATLILQRPKLSPYKETIRTNLSELLG 670
            +RVG GFD H LE     L +GG+ V  E     HSDGD L+H +VDAILGA    +IG  FP+++   +G  S+ F+ E +R    AG YEI N+D+ +I+ + +++P+ E IR  L+ +LG
Sbjct:    2 YRVGIGFDAHPLEANKKGLYLGGVKVSEEYSSIGHSDGDALIHAIVDAILGATNAGNIGIWFPENEEN-RGRRSTEFL-EIIRKKILAGKYEILNIDSVIIIDKVRMNPHIENIRLKLARILG 122          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_SALTO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ispF PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.966e-17
Identity = 45/121 (37.19%), Postives = 63/121 (52.07%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 673
            RV  G D+H  E G P  + G++ P + G   HSD DV  H   +A+L A  L D+G  F    P+W GA     + E+ R +  AGY IGN+   +I  RPK+ P +   +  LS  +GA
Sbjct:    6 RVAIGVDMHAFESGRPCWVAGLHWPGQDGLAGHSDADVAAHAACNALLSAAELGDLGANFGVGQPEWSGASGVALLSESARRVRTAGYTIGNVSVQVIGNRPKIGPRRAEAQQVLSAAVGA 126          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_KINRD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=ispF PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.180e-17
Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHER-GCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 673
            RVG G D+H+L  G P  + G+    E  G E HSDGDV  H   DA+  A GL D+G  F  + P++ GA  +  + EA RL+ EAG+EIGN+   ++  RPK+   +   +  LS   GA
Sbjct:    6 RVGTGVDVHQLVAGRPCWVAGLLWEGEAAGPEGHSDGDVAAHACCDALFAAAGLGDLGAHFGTARPEFAGASGARLLAEAARLVREAGFEIGNVSVQVVGNRPKVGRRRAEAQAALSRACGA 127          
The following BLAST results are available for this feature:
BLAST of FC921244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_PSYA27.228e-1938.102-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CORGB7.228e-1938.842-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PROAC2.103e-1836.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PLAFX3.587e-1836.882-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PLAF73.587e-1836.882-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_COREF1.780e-1738.842-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_FRASC2.325e-1737.602-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_KOSOT3.037e-1742.282-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALTO3.966e-1737.192-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_KINRD5.180e-1740.162-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC32102G10EF RVDevelopN Citrus clementina cDNA clone C32102G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921244 ID=FC921244; Name=FC921244; organism=Citrus clementina; type=EST; length=748bp
TTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTCTCTCC
TCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATACACC
ACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCTCCTCC
GTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACAACAC
AGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTTCTTCC
ATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAAAATC
ACTGCCCTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAGCCTG
GCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGC
GAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATGCAAT
TTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGATTCTG
ATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTG
AGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCACGCT
GATTCTTCAAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGAACCA
ACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAATCTGAAGCGAAA
CTCATGAAAAAGTGATAGCCTGGTGAAATCGAGTATGCACTCAACGTG
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