FC921244

Overview
NameFC921244
Unique NameFC921244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10201 contig Ccv1_Contig10201:6..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_PSEA8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=ispF PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.829e-31
Identity = 59/120 (49.17%), Postives = 89/120 (74.17%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLG 670
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA  L DIG+ FPD+DP++KGA S   ++  V ++ E G+++GN+DAT++ Q PK++P+ ET+R  ++E LG
Sbjct:    2 RIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGLIAEDLG 121          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_LARHH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=ispF PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.829e-31
Identity = 60/123 (48.78%), Postives = 90/123 (73.17%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADP 679
            R+G G+D+HRL  G PL++GG+ +P ++G + HSD D L H + DA+ GA  L DIG+ FPD+D ++KGA S V ++EAVR + EAG++I N+D+T+I Q P+L+PY E +R++L+  LG  P
Sbjct:    4 RIGQGWDVHRLVEGRPLVLGGVTIPFDKGLDGHSDADALCHAITDALFGAAALGDIGRHFPDTDLEFKGADSRVLLREAVRRVREAGFDIVNVDSTVIAQAPRLAPYVEAMRSHLAADLGLSP 126          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_ERWT9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ispF PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.829e-31
Identity = 61/120 (50.83%), Postives = 86/120 (71.67%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLG 670
            R+GHGFD+H      PLIIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+D  +KGA S   ++EA+R + + GY +GN+D T+I Q PK+ P+   +R N++E LG
Sbjct:    2 RIGHGFDVHAFGGEGPLIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDEAYKGADSRELLREALRQIAQKGYRVGNVDVTIIAQAPKMLPHAPQMRINIAEDLG 121          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_CUPTR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=ispF PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.829e-31
Identity = 65/122 (53.28%), Postives = 86/122 (70.49%), Query Frame = 2
Query:  302 LPF--RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSE 661
            +PF  RVG G+D+H L PG  LI+GG+ +PH+RG   HSD D LLH V DA+ GA  L DIG+ FPD+D ++ GA S   ++EA R + EAGYEIGN+DAT+I Q PKL+P+   +  NL+E
Sbjct:    2 MPFDIRVGQGYDVHALVPGRKLILGGVEIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHFPDTDAQFAGADSRALLREAARRVREAGYEIGNVDATVIAQAPKLAPHIGAMVANLAE 123          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_ALKMQ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Alkaliphilus metalliredigens (strain QYMF) GN=ispF PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.829e-31
Identity = 62/120 (51.67%), Postives = 85/120 (70.83%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLG 670
            RVG G+D+HRL  G  LI+GG+ +PHE+G   HSD DVLLH + DA+LGA+ L DIG+ FPD+D K+KG  S   + E  R++ E  Y   N+DAT+I Q PK++PY E +R N++E+LG
Sbjct:    2 RVGIGYDVHRLVEGRKLIVGGVEIPHEKGLLGHSDADVLLHAIKDALLGAVALGDIGKHFPDTDEKYKGESSLYLLNEVGRMLAEKAYVANNIDATIIAQEPKMAPYIELMRRNIAEVLG 121          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_GEOUR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter uraniireducens (strain Rf4) GN=ispF PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.695e-31
Identity = 63/122 (51.64%), Postives = 86/122 (70.49%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGAD 676
            R+GHG+D+H+L     LI+GG+++P+ERG   HSD DVLLH + DAILGA+G  DIG+ FPD+DP +KGA S   +   + L    GY IGNLDAT++ QRPKL+P+   +R N++  L AD
Sbjct:    2 RIGHGYDVHKLVENRKLILGGVDIPYERGLLGHSDADVLLHAISDAILGAIGEGDIGKHFPDTDPAYKGADSIKLLMHVMALAVGKGYAIGNLDATIVAQRPKLAPHIPQMRENIARALKAD 123          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_THETN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermoanaerobacter tengcongensis GN=ispF PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.826e-31
Identity = 62/120 (51.67%), Postives = 87/120 (72.50%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLG 670
            RVG G+D+HR E G  L++GGI +P E+G + HSDGDVL+H ++D ILGA GL DIG+ FPD+D  +K   S + +K  + L+ E  Y + N+D  ++ +RPKLSPYK+ IRT+L+ELLG
Sbjct:    5 RVGIGYDVHRFEEGKKLMLGGIEIPFEKGLKGHSDGDVLIHALIDGILGAAGLGDIGEHFPDTDVAYKEVDSKILLKRVLELVSE-HYVVNNVDCIVVTERPKLSPYKDRIRTSLAELLG 123          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_GEOLS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=ispF PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.826e-31
Identity = 60/122 (49.18%), Postives = 87/122 (71.31%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGAD 676
            R+GHG+D+HRL     LI+GG+++P E+G   HSD DVLLH + DA+LGAL + DIG+ FPD+DP +KGA S   ++  V L+   GY +GNLDAT+I QRPK++P+ + +R N++   G +
Sbjct:    2 RIGHGYDVHRLVEDRKLIMGGVDIPWEKGLLGHSDADVLLHAIADALLGALAMGDIGKHFPDTDPAFKGADSMKLLEHVVGLIRTQGYAVGNLDATIIAQRPKMAPHIQAMRENVARACGVE 123          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_SHESH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella sediminis (strain HAW-EB3) GN=ispF PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.303e-31
Identity = 60/116 (51.72%), Postives = 85/116 (73.28%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 658
            R+GHGFD+H+   G PL++GG+++P+E G  AHSDGDV+LH + DA+LGA+ L DIG+ FPD+D ++KGA S   ++   RL  E GY +GNLD T+I Q PK++P+ E IR  L+
Sbjct:    4 RIGHGFDVHKFGGGSPLLLGGVHIPYETGLIAHSDGDVVLHAISDAVLGAVALGDIGKHFPDTDEEFKGADSRHLLRHCYRLAKEKGYSMGNLDVTIIAQAPKMAPHIEAIREVLA 119          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_SHELP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=ispF PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.303e-31
Identity = 63/122 (51.64%), Postives = 86/122 (70.49%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGAD 676
            R+GHGFD+H+     PLI+GG+ VP++ G  AHSDGDV+LH + DAILGA+ L DIG+ FPD+DP +KGA S V ++   +L  + GY +GNLD T+I Q PK+ P+ + IR  LS  L +D
Sbjct:    4 RIGHGFDVHKFGGELPLILGGVEVPYDTGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDPDFKGADSRVLLRHCYQLALDKGYRLGNLDVTIIAQAPKMLPHIQAIRECLSADLESD 125          
The following BLAST results are available for this feature:
BLAST of FC921244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_PSEA82.829e-3149.172-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_LARHH2.829e-3148.782-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ERWT92.829e-3150.832-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CUPTR2.829e-3153.282-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ALKMQ2.829e-3151.672-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOUR3.695e-3151.642-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_THETN4.826e-3151.672-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOLS4.826e-3149.182-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHESH6.303e-3151.722-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHELP6.303e-3151.642-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC32102G10EF RVDevelopN Citrus clementina cDNA clone C32102G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921244 ID=FC921244; Name=FC921244; organism=Citrus clementina; type=EST; length=748bp
TTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTCTCTCC
TCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATACACC
ACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCTCCTCC
GTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACAACAC
AGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTTCTTCC
ATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAAAATC
ACTGCCCTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAGCCTG
GCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGC
GAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATGCAAT
TTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGATTCTG
ATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTG
AGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCACGCT
GATTCTTCAAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGAACCA
ACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAATCTGAAGCGAAA
CTCATGAAAAAGTGATAGCCTGGTGAAATCGAGTATGCACTCAACGTG
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