FC921244

Overview
NameFC921244
Unique NameFC921244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10201 contig Ccv1_Contig10201:6..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_PHOLL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Photorhabdus luminescens subsp. laumondii GN=ispF PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.075e-30
Identity = 61/117 (52.14%), Postives = 82/117 (70.09%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSE 661
            R+GHGFD+H+     P+IIGG+ +P+E+G  AHSDGDV LH   DA+LGA  L DIG++FPD+DP +KG  S   ++EA   + E GY IGNLD T+I Q PK+ P+   +R NL+E
Sbjct:    2 RIGHGFDVHKFGGEGPIIIGGVRIPYEQGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGVDSRKLLREAYSRIREKGYRIGNLDITIIAQAPKMLPHIPQMRVNLAE 118          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_BURPS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia pseudomallei GN=ispF PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.075e-30
Identity = 58/119 (48.74%), Postives = 86/119 (72.27%), Query Frame = 2
Query:  302 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 658
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+DP++KGA S   ++E    + +AG+ I N+D+T+I Q PKL+P+ + +R N++
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIA 119          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_BURP6 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia pseudomallei (strain 668) GN=ispF PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.075e-30
Identity = 58/119 (48.74%), Postives = 86/119 (72.27%), Query Frame = 2
Query:  302 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 658
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+DP++KGA S   ++E    + +AG+ I N+D+T+I Q PKL+P+ + +R N++
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIA 119          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_BURP1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia pseudomallei (strain 1710b) GN=ispF PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.075e-30
Identity = 58/119 (48.74%), Postives = 86/119 (72.27%), Query Frame = 2
Query:  302 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 658
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+DP++KGA S   ++E    + +AG+ I N+D+T+I Q PKL+P+ + +R N++
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIA 119          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_BURP0 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia pseudomallei (strain 1106a) GN=ispF PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.075e-30
Identity = 58/119 (48.74%), Postives = 86/119 (72.27%), Query Frame = 2
Query:  302 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 658
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+DP++KGA S   ++E    + +AG+ I N+D+T+I Q PKL+P+ + +R N++
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIA 119          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_BURMS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia mallei (strain SAVP1) GN=ispF PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.075e-30
Identity = 58/119 (48.74%), Postives = 86/119 (72.27%), Query Frame = 2
Query:  302 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 658
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+DP++KGA S   ++E    + +AG+ I N+D+T+I Q PKL+P+ + +R N++
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIA 119          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_BURMA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia mallei GN=ispF PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.075e-30
Identity = 58/119 (48.74%), Postives = 86/119 (72.27%), Query Frame = 2
Query:  302 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 658
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+DP++KGA S   ++E    + +AG+ I N+D+T+I Q PKL+P+ + +R N++
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIA 119          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_BURM9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia mallei (strain NCTC 10229) GN=ispF PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.075e-30
Identity = 58/119 (48.74%), Postives = 86/119 (72.27%), Query Frame = 2
Query:  302 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 658
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+DP++KGA S   ++E    + +AG+ I N+D+T+I Q PKL+P+ + +R N++
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIA 119          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_BURM7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia mallei (strain NCTC 10247) GN=ispF PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.075e-30
Identity = 58/119 (48.74%), Postives = 86/119 (72.27%), Query Frame = 2
Query:  302 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 658
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+DP++KGA S   ++E    + +AG+ I N+D+T+I Q PKL+P+ + +R N++
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIA 119          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPDF_SILST (Bifunctional enzyme ispD/ispF OS=Silicibacter sp. (strain TM1040) GN=ispDF PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.075e-30
Identity = 57/122 (46.72%), Postives = 85/122 (69.67%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGAD 676
            R+G+G+D+HR  PG  +++ G+ VPHERG + HSD DV +H V DA+ GA+   DIG+ FP SDP+WKGA S +F++ AV L    G+ I N+D TL+ + PK+ P+ E +R  ++E++G D
Sbjct:  227 RLGNGYDVHRFGPGDHVMLCGVQVPHERGLQGHSDADVGMHAVTDALYGAMAEGDIGRHFPPSDPQWKGAASDIFLRHAVELARSKGFTINNVDCTLVCEYPKVGPHAEAMRARMAEIMGMD 348          
The following BLAST results are available for this feature:
BLAST of FC921244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_PHOLL1.075e-3052.142-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURPS1.075e-3048.742-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURP61.075e-3048.742-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURP11.075e-3048.742-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURP01.075e-3048.742-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURMS1.075e-3048.742-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURMA1.075e-3048.742-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURM91.075e-3048.742-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURM71.075e-3048.742-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_SILST1.075e-3046.72Bifunctional enzyme ispD/ispF OS=Silicibacter sp. ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32102G10EF RVDevelopN Citrus clementina cDNA clone C32102G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921244 ID=FC921244; Name=FC921244; organism=Citrus clementina; type=EST; length=748bp
TTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTCTCTCC
TCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATACACC
ACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCTCCTCC
GTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACAACAC
AGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTTCTTCC
ATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAAAATC
ACTGCCCTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAGCCTG
GCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGC
GAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATGCAAT
TTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGATTCTG
ATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTG
AGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCACGCT
GATTCTTCAAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGAACCA
ACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAATCTGAAGCGAAA
CTCATGAAAAAGTGATAGCCTGGTGAAATCGAGTATGCACTCAACGTG
back to top