FC921244

Overview
NameFC921244
Unique NameFC921244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10201 contig Ccv1_Contig10201:6..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_YERPA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.834e-30
Identity = 64/119 (53.78%), Postives = 87/119 (73.11%), Query Frame = 2
Query:  311 RVGHGFDLHRL-EPGY-PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSE 661
            R+GHGFD+H+  E G  PLIIGG+ +P+E+G  AHSDGDV LH   DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY++GNLD T+I Q PK++P+   +R NL+E
Sbjct:    2 RIGHGFDVHKFGENGSGPLIIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAYRRILAKGYKLGNLDITIIAQAPKMAPHIPQMRVNLAE 120          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_YERP3 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.834e-30
Identity = 64/119 (53.78%), Postives = 87/119 (73.11%), Query Frame = 2
Query:  311 RVGHGFDLHRL-EPGY-PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSE 661
            R+GHGFD+H+  E G  PLIIGG+ +P+E+G  AHSDGDV LH   DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY++GNLD T+I Q PK++P+   +R NL+E
Sbjct:    2 RIGHGFDVHKFGENGSGPLIIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAYRRILAKGYKLGNLDITIIAQAPKMAPHIPQMRVNLAE 120          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_PSEE4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas entomophila (strain L48) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.834e-30
Identity = 57/116 (49.14%), Postives = 87/116 (75.00%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 658
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA  L DIG+ FPD+DP++KGA S V ++  V ++D  G+++GN+DAT++ Q PK++P+ ET+R  ++
Sbjct:    2 RIGHGYDVHRFCDGDFITLGGVRIPHKYGLLAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPQFKGADSRVLLRHVVGIVDNKGWKVGNVDATIVAQAPKMAPHIETMRQQIA 117          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_PELPD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pelobacter propionicus (strain DSM 2379) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.834e-30
Identity = 61/119 (51.26%), Postives = 85/119 (71.43%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 667
            R+GHG+D+H+L  G  LI+GG+++P E+G   HSD DVLLH + DAILGALG  DIG+ FPD+DP +KGA S   ++    L    GY +GNLDAT+I QRPK++P+   +R N++ +L
Sbjct:    2 RIGHGYDVHKLVEGRKLIMGGVDIPWEKGLLGHSDADVLLHAIADAILGALGEGDIGKHFPDTDPAYKGADSLKLLEHVANLAIAKGYCLGNLDATIIAQRPKMAPHIPAMRENIARVL 120          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_GEOKA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacillus kaustophilus GN=ispF PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.834e-30
Identity = 62/123 (50.41%), Postives = 85/123 (69.11%), Query Frame = 2
Query:  308 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGAD 676
            FR+G GFD+H+L  G PLIIGG+ +P+E+G   HSD DVLLH V DA LGA+G  DIG+ FPD+DP++K A S+  +     L  + GY + N D T+I Q+PKL+PY E +R  ++ LL A+
Sbjct:    2 FRIGQGFDVHQLVEGRPLIIGGVTIPYEKGLLGHSDADVLLHAVADACLGAIGAGDIGRHFPDTDPRFKDADSAELLAHVWALARQEGYRLVNADCTIIAQKPKLAPYIEEMRAVIARLLEAE 124          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_EDWI9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Edwardsiella ictaluri (strain 93-146) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.834e-30
Identity = 62/117 (52.99%), Postives = 81/117 (69.23%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSE 661
            R+GHGFD+HR     PLIIGG+ + H +G  AHSDGDV LH   DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GNLD TLI Q PK++P+   +R  L+E
Sbjct:    2 RIGHGFDVHRFGGEGPLIIGGVRIAHPQGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAYKGADSRALLREAYRSIRARGYRLGNLDITLIAQAPKMAPHIPQMRVFLAE 118          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_DECAR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Dechloromonas aromatica (strain RCB) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.834e-30
Identity = 62/124 (50.00%), Postives = 86/124 (69.35%), Query Frame = 2
Query:  308 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADP 679
            FRVG G+D+H+L  G  LI+GG+ +PH  G   HSD D LLH + DA+LGA+ L DIG+ FPD+DP++KGA S V ++ AV L+ E G+   N+DATLI Q+PKL+P+   +  N++  LG  P
Sbjct:    3 FRVGQGYDVHKLVDGRKLILGGVEIPHPTGLLGHSDADALLHAITDALLGAVALGDIGRHFPDTDPRYKGADSRVLLRAAVALLAERGWRPVNVDATLIAQQPKLAPHAVAMVANVAADLGISP 126          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_SYNP6 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.395e-30
Identity = 58/124 (46.77%), Postives = 87/124 (70.16%), Query Frame = 2
Query:  308 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADP 679
            FR+G+G+D+HRL  G PLI+GGI + H  G + HSD DVL H ++DA+LGAL L DIG  FP +DP+WKGA S   + +  +L+ + G+ IGNLD+ ++ ++PKL P+   +R  L+++L  +P
Sbjct:    4 FRIGNGYDIHRLVEGRPLILGGIQLEHSLGLDGHSDADVLTHAIMDALLGALSLGDIGHYFPPTDPQWKGADSLKLLAQVNQLIRDRGWTIGNLDSVVVAEQPKLKPHIAAMRDRLAKVLELEP 127          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_SYNE7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.395e-30
Identity = 58/124 (46.77%), Postives = 87/124 (70.16%), Query Frame = 2
Query:  308 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADP 679
            FR+G+G+D+HRL  G PLI+GGI + H  G + HSD DVL H ++DA+LGAL L DIG  FP +DP+WKGA S   + +  +L+ + G+ IGNLD+ ++ ++PKL P+   +R  L+++L  +P
Sbjct:    4 FRIGNGYDIHRLVEGRPLILGGIQLEHSLGLDGHSDADVLTHAIMDALLGALSLGDIGHYFPPTDPQWKGADSLKLLAQVNQLIRDRGWTIGNLDSVVVAEQPKLKPHIAAMRDRLAKVLELEP 127          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_BORPD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.395e-30
Identity = 62/125 (49.60%), Postives = 85/125 (68.00%), Query Frame = 2
Query:  302 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGAD 676
            +PFRVG G+D+H L  G PLIIGG+ +PH  G + HSD DVLLH V DA+LGA GL DIG+ FPD+DP ++GA S V +++AV  +  AG+   N+DAT+  Q PK+ P+   +  N++   G D
Sbjct:    3 VPFRVGQGYDVHALVAGRPLIIGGVTIPHTHGLQGHSDADVLLHAVTDALLGAAGLGDIGRHFPDTDPAYRGADSRVLLRDAVAKVRAAGWAPVNIDATVHAQAPKIGPHAGAMVANIAADAGID 127          
The following BLAST results are available for this feature:
BLAST of FC921244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_YERPA1.834e-3053.782-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_YERP31.834e-3053.782-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSEE41.834e-3049.142-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PELPD1.834e-3051.262-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOKA1.834e-3050.412-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_EDWI91.834e-3052.992-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_DECAR1.834e-3050.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SYNP62.395e-3046.772-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SYNE72.395e-3046.772-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BORPD2.395e-3049.602-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC32102G10EF RVDevelopN Citrus clementina cDNA clone C32102G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921244 ID=FC921244; Name=FC921244; organism=Citrus clementina; type=EST; length=748bp
TTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTCTCTCC
TCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATACACC
ACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCTCCTCC
GTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACAACAC
AGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTTCTTCC
ATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAAAATC
ACTGCCCTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAGCCTG
GCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGC
GAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATGCAAT
TTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGATTCTG
ATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTG
AGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCACGCT
GATTCTTCAAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGAACCA
ACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAATCTGAAGCGAAA
CTCATGAAAAAGTGATAGCCTGGTGAAATCGAGTATGCACTCAACGTG
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