FC921245

Overview
NameFC921245
Unique NameFC921245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA2_CHLRE (Glutamine synthetase, chloroplastic OS=Chlamydomonas reinhardtii GN=GLN2 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.298e-31
Identity = 76/186 (40.86%), Postives = 102/186 (54.84%), Query Frame = 3
Query:  153 AEYIWIGGS------GM---DMRSKARTLPGPVS-DPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            AEYIW  G+      GM   +MRSK +    P+  D S+ P W++DGSSTGQA G +S+ IL P  +  DP R   ++LVMC+ + P G+P  TN R    +I     V AE+ WYG EQEYT+L K                         A+ A+GR + ++H +AC+ AG+ ISGIN EVMPG
Sbjct:   37 AEYIWADGNEGKPEKGMIFNEMRSKTKCFEAPLGLDASEYPDWSFDGSSTGQAEGNNSDCILRPVRVVTDPIRGAPHVLVMCEVFAPDGKPHSTNTRAKLREIID-DKVTAEDCWYGFEQEYTMLAKTSGHIYGWPAGGFPAPQGPFYCGVGAESAFGRPLAEAHMEACMKAGLVISGINAEVMPG 221          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA2_STRVR (Glutamine synthetase 2 OS=Streptomyces viridochromogenes GN=glnII PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.352e-28
Identity = 72/178 (40.45%), Postives = 96/178 (53.93%), Query Frame = 3
Query:  153 AEYIWIGGSG--MDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            AEYIWI G+     +RSK + + G  +    LP W +DGSST QA G  S+ +L P     DP R G++ILV+C+       P  +N R A A++       A+EP +GIEQEYT  Q    +PL                   AD+ +GRD+V++H   CL AG+ ISGIN EVMPG
Sbjct:    5 AEYIWIDGTEPTAKLRSKTKIITGQPAGLDALPIWGFDGSSTNQAEGHSSDCVLKPVFTCPDPIRGGDDILVLCEVLNIDLTPHASNTRAALAEVAER--FAAQEPIFGIEQEYTFFQDG--YPLGFPKGGFPAPQGGYYCGVGADEIFGRDVVEAHLDNCLKAGLAISGINAEVMPG 178          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA2_STRHY (Glutamine synthetase 2 OS=Streptomyces hygroscopicus GN=glnB PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.143e-25
Identity = 73/181 (40.33%), Postives = 97/181 (53.59%), Query Frame = 3
Query:  147 IIAEYIWIGGSG--MDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPL-XXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            I AEYIWI G+     +RSK + L    SD S+LP+W +DGSST QA G  S+++L P     DP R G+++LV+C+       P P+N R     +        +EP +GIEQEYT L+ D   PL                    AD  +GR+IV+ H   CL AG+ +SGIN EVMPG
Sbjct:    3 IKAEYIWIDGTQPTAKLRSKTKIL----SDGSRLPRWGFDGSSTNQAEGHASDLVLEPVFSCPDPIRGGDHLLVLCEVLHTDLTPHPSNTRALLRPVAER--FAGQEPIFGIEQEYTFLKGD--RPLGFPEGGGYPAPQADYYCGVGADAIFGREIVEKHLDLCLAAGLGLSGINAEVMPG 175          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA2_FRAAL (Glutamine synthetase 2 OS=Frankia alni GN=glnII PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.491e-21
Identity = 71/179 (39.66%), Postives = 91/179 (50.84%), Query Frame = 3
Query:  153 AEYIWIGGSGMD--MRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFS-HSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            AEYIWI G+  +  MRSK R     + D  +   W +DGSST QAPG +S+ +L P     DP R G+N LV+C+       P PTN R AA  +   ++D+    P +GIEQEYT   KD + P                      K  GR IV+ H +ACL AG+ I G N EVM G
Sbjct:    5 AEYIWIDGTEPEPLMRSKTRI----IKDGKEPEIWGFDGSSTNQAPGSNSDCVLRPVFETPDPIRGGDNRLVLCEVQLTDFTP-PTNTRAAALGVAERYADM---SPMFGIEQEYTFF-KDGR-PYGWPEVGYPAPQGPYYCGVGGSKMPGRQIVERHTQACLDAGLAIEGTNAEVMMG 173          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA2_BRAJA (Glutamine synthetase 2 OS=Bradyrhizobium japonicum GN=glnII PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.287e-16
Identity = 64/181 (35.36%), Postives = 85/181 (46.96%), Query Frame = 3
Query:  156 EYIWIGGSGMDMRSKART-LPGPVSDPS--KLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGE-PIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQ--KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            EYIW+ G       + +T +    S P+  +LP W +DGSST QA G  S+ +L P A+F D   R N +LVMC+   P G+ P  +NKR   A I   +       W+G EQEY   +  + + +P                     D A  R IV+ H   CL AGIN  GIN EV  G
Sbjct:    7 EYIWLDGYTPTPNLRGKTQIKEFASFPTLEQLPLWGFDGSSTQQAEGHSSDCVLKPVAVFPDA-ARTNGVLVMCEVMMPDGKTPHASNKR---ATILDDAGA-----WFGFEQEYFFYKDGRPLGFPTSGYPAPQGPYYTGVGFSNVGDVA--RKIVEEHLDLCLAAGINHEGINAEVAKG 176          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_DUNSA (Glutamine synthetase (Fragment) OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.079e-15
Identity = 37/75 (49.33%), Postives = 46/75 (61.33%), Query Frame = 3
Query:  453 AEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            A+EPW+GIEQEYTLL    KWPL                   A ++ GRDI + HY+ CL+AGI ISG+NGEV+P
Sbjct:    2 AQEPWFGIEQEYTLLNSVTKWPLGWPKGGYPAGQGPYYCSVGAGRSIGRDIPEVHYRCCLHAGIQISGVNGEVLP 76          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA2_RHILP (Glutamine synthetase 2 OS=Rhizobium leguminosarum bv. phaseoli GN=glnII PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 63/183 (34.43%), Postives = 80/183 (43.72%), Query Frame = 3
Query:  144 KIIAEYIWIGGSGMDMRSKARTLPGPVSD---PSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKA-WGRDIVDSHYKACLYAGINISGINGEVMPG 680
            K   EYIW+ G       + +T      +     +LP W +DGSST QA G  S+ +L P AI+ DP  R N  LVMC+   P G    +N R   A I        E+ W+G EQEY   Q     PL                   ++     R+IV+ H   CL AGIN  GIN EV  G
Sbjct:    3 KFKLEYIWLDGYTPVPNLRGKTQIKEFDEFPTLEQLPLWGFDGSSTMQAEG-SSDCVLKPVAIYPDP-ARTNGALVMCEVMMPDGHAHASNAR---ATILDD-----EDAWFGFEQEYFFYQNG--RPLGFPEQGYPAPQPYYTGVGYSNVGDVAREIVEEHLDLCLAAGINHEGINAEVAKG 173          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA2_RHIME (Glutamine synthetase 2 OS=Rhizobium meliloti GN=glnII PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 61/186 (32.80%), Postives = 78/186 (41.94%), Query Frame = 3
Query:  156 EYIWIGGSGMDMRSKARTLPGPVSDPS--------KLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGE-PIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQ--KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            EYIW+     D     +TL G              +LP W +DGSST QA G  S+ +L P  ++ DP R  N  LVMC+   P  E P  +N R           +  E  W+G EQEY   +  + + +P                     D A  R IV+ H   CL AGIN  GIN EV  G
Sbjct:    7 EYIWL-----DATRPYQTLRGKTQIKEFDAFPTLEQLPLWGFDGSSTLQAEGRTSDCVLKPVTVYPDPVRT-NGALVMCEVMMPDAETPHASNTRATV--------LDDEGAWFGFEQEYFFYKNGRPLGFPEQGYPAPQGPYYTGVGYKNVGDVA--RQIVEEHLDICLAAGINHEGINAEVAKG 176          
The following BLAST results are available for this feature:
BLAST of FC921245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA2_CHLRE5.298e-3140.86Glutamine synthetase, chloroplastic OS=Chlamydomon... [more]
GLNA2_STRVR9.352e-2840.45Glutamine synthetase 2 OS=Streptomyces viridochrom... [more]
GLNA2_STRHY1.143e-2540.33Glutamine synthetase 2 OS=Streptomyces hygroscopic... [more]
GLNA2_FRAAL6.491e-2139.66Glutamine synthetase 2 OS=Frankia alni GN=glnII PE... [more]
GLNA2_BRAJA6.287e-1635.36Glutamine synthetase 2 OS=Bradyrhizobium japonicum... [more]
GLNA_DUNSA9.079e-1549.33Glutamine synthetase (Fragment) OS=Dunaliella sali... [more]
GLNA2_RHILP3.450e-1434.43Glutamine synthetase 2 OS=Rhizobium leguminosarum ... [more]
GLNA2_RHIME1.712e-1332.80Glutamine synthetase 2 OS=Rhizobium meliloti GN=gl... [more]

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Properties
Property NameValue
Genbank descriptionC32102G11EF RVDevelopN Citrus clementina cDNA clone C32102G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921245 ID=FC921245; Name=FC921245; organism=Citrus clementina; type=EST; length=680bp
GGTCTCTGTGTAGCACATTAACATCCCTTCAATCACAGCAATCTCATTAC
CAGTTTCTTTGTTGTGTTAAGAGACTAAAGAGTCTTCGAAACATGTCTCT
GCTCTCAGATCTCCTTAACCTTAACCTCTCAGAATCCACTGACAAGATCA
TCGCTGAGTACATATGGATCGGTGGATCTGGCATGGACATGAGGAGCAAA
GCAAGGACTCTTCCCGGTCCCGTTAGTGATCCTTCCAAGCTGCCTAAGTG
GAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAAGATAGTGAAG
TGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAGGAGAGGCAAC
AATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGAGAACCAATTCC
AACAAACAAAAGACATGCAGCTGCCAAGATTTTCAGCCATTCTGACGTTG
TGGCTGAAGAACCATGGTATGGTATTGAGCAGGAATACACCTTACTGCAG
AAGGATGTTAAATGGCCTCTTGGCTGGCCCATCGGTGGTTATCCTGGGCC
TCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGCTTGGGGGCGCG
ACATTGTAGACTCCCATTACAAGGCCTGTCTATATGCAGGAATCAACATC
AGTGGCATCAATGGAGAAGTCATGCCGGGG
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