FC921249

Overview
NameFC921249
Unique NameFC921249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921249 vs. ExPASy Swiss-Prot
Match: AL1A2_RAT (Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 3.540e-68
Identity = 121/207 (58.45%), Postives = 157/207 (75.85%), Query Frame = 1
Query:    1 VVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEQTPLIALYFAHLAKLAGVPDGVLNVVPGFGPTAGAAIASHMDIDKVSFTGSTDVGRQVMQAAATSNLKPVSLELGGKSPLLIFDDVDVNTAADMALLGILFNKGEICVASSRVYVQEGIYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGATL 621
            V G IIPWNFP  MF  K++PAL  G T+++KPAEQTPL ALY   L K AG P GV+N++PG+GPTAGAAIASH+ IDK++FTGST+VG+ + +AA  SNLK V+LELGGKSP +IF D D++ A + A  G+ FN+G+ C A SR++V+E IY+EF K+ VE+AK  +VG PFDP   QGPQ+DKKQ+++IL  I+ G  EGA L
Sbjct:  179 VCGQIIPWNFPLLMFTWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVVNILPGYGPTAGAAIASHIGIDKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEESIYEEFVKRSVERAKRRIVGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKL 385          
BLAST of FC921249 vs. ExPASy Swiss-Prot
Match: AL1A7_RAT (Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norvegicus GN=Aldh1a7 PE=1 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 4.623e-68
Identity = 124/207 (59.90%), Postives = 161/207 (77.78%), Query Frame = 1
Query:    1 VVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEQTPLIALYFAHLAKLAGVPDGVLNVVPGFGPTAGAAIASHMDIDKVSFTGSTDVGRQVMQAAATSNLKPVSLELGGKSPLLIFDDVDVNTAADMALLGILFNKGEICVASSRVYVQEGIYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGATL 621
            V G IIPWN P  +F  K+  AL+ G T+IVKPAEQTPL ALY A L K AG P GV+NVVPG+G TAGAAI+SHMDIDKVSFTGST+VG+ + +AA  SNLK V+LELGGKSP ++F D D+++A + A  G+ F++G+ICVA+SR++V+E IYDEF ++ VE+AK +V+G+P D  + QGPQ+DK+Q  +IL  IE GK+EGA L
Sbjct:  162 VCGQIIPWNGPLILFIWKIGAALSCGNTVIVKPAEQTPLTALYMASLIKEAGFPPGVVNVVPGYGSTAGAAISSHMDIDKVSFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDSAVEFAHQGVFFHQGQICVAASRLFVEESIYDEFVRRSVERAKKYVLGNPLDSGISQGPQIDKEQHAKILDLIESGKKEGAKL 368          
BLAST of FC921249 vs. ExPASy Swiss-Prot
Match: AL1A2_MOUSE (Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 4.623e-68
Identity = 120/207 (57.97%), Postives = 157/207 (75.85%), Query Frame = 1
Query:    1 VVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEQTPLIALYFAHLAKLAGVPDGVLNVVPGFGPTAGAAIASHMDIDKVSFTGSTDVGRQVMQAAATSNLKPVSLELGGKSPLLIFDDVDVNTAADMALLGILFNKGEICVASSRVYVQEGIYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGATL 621
            V G IIPWNFP  MF  K++PAL  G T+++KPAEQTPL ALY   L K AG P GV+N++PG+GPTAGAAIASH+ IDK++FTGST+VG+ + +AA  SNLK V+LELGGKSP +IF D D++ A + A  G+ FN+G+ C A SR++V+E IY+EF K+ VE+AK  +VG PFDP   QGPQ+DKKQ++++L  I+ G  EGA L
Sbjct:  179 VCGQIIPWNFPLLMFTWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVVNILPGYGPTAGAAIASHIGIDKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEESIYEEFVKRSVERAKRRIVGSPFDPTTEQGPQIDKKQYNKVLELIQSGVAEGAKL 385          
BLAST of FC921249 vs. ExPASy Swiss-Prot
Match: AL1A2_HUMAN (Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2 PE=1 SV=3)

HSP 1 Score: 257.299 bits (656), Expect = 4.623e-68
Identity = 121/207 (58.45%), Postives = 157/207 (75.85%), Query Frame = 1
Query:    1 VVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEQTPLIALYFAHLAKLAGVPDGVLNVVPGFGPTAGAAIASHMDIDKVSFTGSTDVGRQVMQAAATSNLKPVSLELGGKSPLLIFDDVDVNTAADMALLGILFNKGEICVASSRVYVQEGIYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGATL 621
            V G IIPWNFP  MF  K++PAL  G T+++KPAEQTPL ALY   L K AG P GV+N++PG+GPTAGAAIASH+ IDK++FTGST+VG+ + +AA  SNLK V+LELGGKSP +IF D D++ A + A  G+ FN+G+ C A SR++V+E IY+EF ++ VE+AK  VVG PFDP   QGPQ+DKKQ+++IL  I+ G  EGA L
Sbjct:  179 VCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVINILPGYGPTAGAAIASHIGIDKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEESIYEEFVRRSVERAKRRVVGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKL 385          
BLAST of FC921249 vs. ExPASy Swiss-Prot
Match: AL1A7_MOUSE (Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculus GN=Aldh1a7 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 7.886e-68
Identity = 120/207 (57.97%), Postives = 163/207 (78.74%), Query Frame = 1
Query:    1 VVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEQTPLIALYFAHLAKLAGVPDGVLNVVPGFGPTAGAAIASHMDIDKVSFTGSTDVGRQVMQAAATSNLKPVSLELGGKSPLLIFDDVDVNTAADMALLGILFNKGEICVASSRVYVQEGIYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGATL 621
            V G IIPWN P  +F  K+ PAL+ G T++VKPAEQTPL AL+ A L K AG P GV+N+VPG+GPTAG AI+SHMDIDKVSFTGST+VG+ + +AA  SNLK V+LELGGKSP ++F D D+++A + A  G+ F++G+ICVA+SR++V+E IYDEF ++ VE+AK +++G+P +  + QGPQ+DK+Q ++IL  IE GK+EGA L
Sbjct:  162 VCGQIIPWNGPLIIFTWKLGPALSCGNTVVVKPAEQTPLTALHMASLIKEAGFPPGVVNIVPGYGPTAGGAISSHMDIDKVSFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDSAVEFAHQGVFFHQGQICVAASRLFVEESIYDEFVRRSVERAKKYILGNPLNSGINQGPQIDKEQHNKILGLIESGKKEGAKL 368          
BLAST of FC921249 vs. ExPASy Swiss-Prot
Match: AL1A2_CHICK (Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A2 PE=2 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 1.757e-67
Identity = 121/207 (58.45%), Postives = 155/207 (74.88%), Query Frame = 1
Query:    1 VVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEQTPLIALYFAHLAKLAGVPDGVLNVVPGFGPTAGAAIASHMDIDKVSFTGSTDVGRQVMQAAATSNLKPVSLELGGKSPLLIFDDVDVNTAADMALLGILFNKGEICVASSRVYVQEGIYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGATL 621
            V G IIPWNFP  MF  K++PAL  G T+++KPAEQTPL ALY   L K AG P GV+N++PGFGP  GAAIASH+ IDK++FTGST+VG+ + +AA  SNLK V+LELGGKSP +IF D D++ A + A  G+ FN+G+ C A SR+YV+E IY+EF ++ VE+AK  VVG PFDP   QGPQ+DKKQ+++IL  I+ G  EGA L
Sbjct:  179 VCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVVNILPGFGPIVGAAIASHVGIDKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIYVEESIYEEFVRRSVERAKRRVVGSPFDPTTEQGPQIDKKQYNKILELIQSGITEGAKL 385          
BLAST of FC921249 vs. ExPASy Swiss-Prot
Match: AL1A2_TAEGU (Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=ALDH1A2 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 2.997e-67
Identity = 120/207 (57.97%), Postives = 155/207 (74.88%), Query Frame = 1
Query:    1 VVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEQTPLIALYFAHLAKLAGVPDGVLNVVPGFGPTAGAAIASHMDIDKVSFTGSTDVGRQVMQAAATSNLKPVSLELGGKSPLLIFDDVDVNTAADMALLGILFNKGEICVASSRVYVQEGIYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGATL 621
            V G IIPWNFP  MF  K++PAL  G T+++KPAEQTPL ALY   L K AG P GV+N++PGFGP  GAAIASH+ IDK++FTGST+VG+ + +AA  SNLK V+LELGGKSP +IF D D++ A + A  G+ FN+G+ C A SR+YV+E IY+EF +K V++AK  +VG PFDP   QGPQ+DKKQ+++IL  I+ G  EGA L
Sbjct:  179 VCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVVNILPGFGPIVGAAIASHVGIDKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIYVEESIYEEFVRKSVKRAKRKIVGSPFDPTTEQGPQIDKKQYNKILELIQSGITEGAKL 385          
BLAST of FC921249 vs. ExPASy Swiss-Prot
Match: ALDH_EMENI (Aldehyde dehydrogenase OS=Emericella nidulans GN=aldA PE=3 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 6.676e-67
Identity = 126/207 (60.87%), Postives = 155/207 (74.88%), Query Frame = 1
Query:    1 VVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEQTPLIALYFAHLAKLAGVPDGVLNVVPGFGPTAGAAIASHMDIDKVSFTGSTDVGRQVMQAAATSNLKPVSLELGGKSPLLIFDDVDVNTAADMALLGILFNKGEICVASSRVYVQEGIYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGATL 621
            V G IIPWNFP  M+  K+ PA+AAG T+++K AEQTPL ALY A L K AG P GV+NV+ GFG TAGAAI+SHMDIDKV+FTGST VGR ++QAAA SNLK V+LELGGKSP ++FDD D++ A   A  GI FN G+ C A SR+ VQEGIYD+F  +  E+A+   VG+PF+    QGPQV + QFDRI+ YI HGK+ GAT+
Sbjct:  157 VCGQIIPWNFPLLMWSWKIGPAVAAGNTVVLKTAEQTPLSALYAAKLIKEAGFPAGVINVISGFGRTAGAAISSHMDIDKVAFTGSTLVGRTILQAAAKSNLKKVTLELGGKSPNIVFDDADIDNAISWANFGIFFNHGQCCCAGSRILVQEGIYDKFVARFKERAQKNKVGNPFEQDTFQGPQVSQLQFDRIMEYINHGKKAGATV 363          
BLAST of FC921249 vs. ExPASy Swiss-Prot
Match: ALDH2_PONAB (Aldehyde dehydrogenase, mitochondrial OS=Pongo abelii GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 5.652e-66
Identity = 124/208 (59.62%), Postives = 154/208 (74.04%), Query Frame = 1
Query:    1 VVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEQTPLIALYFAHLAKLAGVPDGVLNVVPGFGPTAGAAIASHMDIDKVSFTGSTDVGRQVMQAAATSNLKPVSLELGGKSPLLIFDDVDVNTAADMALLGILFNKGEICVASSRVYVQEGIYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGATLL 624
            V G IIPWNFP  M   K+ PALA G  +++K AEQTPL ALY A+L K AG P GV+N+VPGFGPTAGAAIASH D+DKV+FTGST++GR +  AA +SNLK V+LELGGKSP +I  D D++ A + A   + FN+G+ C A SR +VQE IYDEF ++ V +AK+ VVG+PFD    QGPQVD+ QF +IL YI  GK+EGA LL
Sbjct:  178 VCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLL 385          
BLAST of FC921249 vs. ExPASy Swiss-Prot
Match: ALDH2_HUMAN (Aldehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 5.652e-66
Identity = 124/208 (59.62%), Postives = 154/208 (74.04%), Query Frame = 1
Query:    1 VVGHIIPWNFPTTMFFMKVSPALAAGCTMIVKPAEQTPLIALYFAHLAKLAGVPDGVLNVVPGFGPTAGAAIASHMDIDKVSFTGSTDVGRQVMQAAATSNLKPVSLELGGKSPLLIFDDVDVNTAADMALLGILFNKGEICVASSRVYVQEGIYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGATLL 624
            V G IIPWNFP  M   K+ PALA G  +++K AEQTPL ALY A+L K AG P GV+N+VPGFGPTAGAAIASH D+DKV+FTGST++GR +  AA +SNLK V+LELGGKSP +I  D D++ A + A   + FN+G+ C A SR +VQE IYDEF ++ V +AK+ VVG+PFD    QGPQVD+ QF +IL YI  GK+EGA LL
Sbjct:  178 VCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLL 385          
The following BLAST results are available for this feature:
BLAST of FC921249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AL1A2_RAT3.540e-6858.45Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Al... [more]
AL1A7_RAT4.623e-6859.90Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norv... [more]
AL1A2_MOUSE4.623e-6857.97Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2... [more]
AL1A2_HUMAN4.623e-6858.45Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2... [more]
AL1A7_MOUSE7.886e-6857.97Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculu... [more]
AL1A2_CHICK1.757e-6758.45Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A... [more]
AL1A2_TAEGU2.997e-6757.97Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=... [more]
ALDH_EMENI6.676e-6760.87Aldehyde dehydrogenase OS=Emericella nidulans GN=a... [more]
ALDH2_PONAB5.652e-6659.62Aldehyde dehydrogenase, mitochondrial OS=Pongo abe... [more]
ALDH2_HUMAN5.652e-6659.62Aldehyde dehydrogenase, mitochondrial OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionC32102H03EF RVDevelopN Citrus clementina cDNA clone C32102H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921249 ID=FC921249; Name=FC921249; organism=Citrus clementina; type=EST; length=626bp
GTTGTTGGACACATCATTCCCTGGAATTTTCCTACCACCATGTTTTTCAT
GAAGGTTAGCCCTGCGTTAGCCGCTGGGTGCACAATGATTGTCAAGCCTG
CTGAGCAAACTCCCCTTATTGCTCTTTATTTTGCCCATCTTGCCAAGCTG
GCTGGAGTACCTGATGGAGTGCTTAATGTTGTACCTGGATTTGGACCAAC
TGCTGGTGCTGCCATCGCCTCCCATATGGACATTGATAAAGTTAGTTTTA
CAGGGTCTACGGATGTCGGACGTCAAGTGATGCAGGCCGCAGCAACAAGC
AACTTGAAGCCAGTTTCACTAGAATTAGGTGGCAAGTCGCCTCTCTTGAT
TTTTGATGATGTTGATGTAAACACAGCTGCAGACATGGCGCTTCTGGGCA
TCCTGTTTAACAAGGGAGAAATTTGTGTGGCAAGTTCTCGTGTTTATGTC
CAGGAAGGAATTTATGATGAATTTGAAAAGAAGTTGGTCGAAAAGGCAAA
AGCTTGGGTAGTTGGTGATCCTTTTGATCCTGCAGTTCGTCAAGGACCCC
AGGTCGATAAGAAGCAGTTCGATAGAATTCTTTCGTACATTGAGCATGGC
AAGAGGGAAGGAGCCACATTGTTAAC
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