FC921256

Overview
NameFC921256
Unique NameFC921256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14276 contig Ccv1_Contig14276:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.241e-40
Identity = 80/183 (43.72%), Postives = 118/183 (64.48%), Query Frame = 1
Query:  145 SMGTTIIGVTYNGGVVLGADSRTSTG-VYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690
            S GTTI+ VT+NGGV++G+DSR S G  YV+++  +K+ Q+ D ++ C +GS AD+Q V+   ++ +  H+IQ+  P  VK AA++++ L YNNK  LQ G I  GWD+ +G ++Y V LGG ++ QPF I      Y+YG+ D  +K  M+KEE  Q    A++LA+ RD  SGGV   V I
Sbjct:   14 STGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNALALAMGRDNVSGGVAHLVVI 196          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.822e-40
Identity = 80/183 (43.72%), Postives = 118/183 (64.48%), Query Frame = 1
Query:  145 SMGTTIIGVTYNGGVVLGADSRTSTG-VYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690
            S GTTI+ VT+NGGV++G+DSR S G  YV+++  +K+ Q+ D ++ C +GS AD+Q V+   ++ +  H+IQ+  P  VK AA++++ L YNNK  LQ G I  GWD+ +G ++Y V LGG ++ QPF I      Y+YG+ D  +K  M+KEE  Q    A++LA+ RD  SGGV   V I
Sbjct:   14 STGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFAKNALALAMGRDNVSGGVAHLVVI 196          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB6_ENCCU (Probable proteasome subunit beta type-6 OS=Encephalitozoon cuniculi GN=PRE3 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.151e-36
Identity = 79/187 (42.25%), Postives = 120/187 (64.17%), Query Frame = 1
Query:  133 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN 693
            N     GTTII + Y+ GV++GADSRTS G YV++RV+DK+TQ+TD +++CRSGS+AD+Q +S Y+R +L  ++        V+ AA L   + Y N + L  G+IV G+D  +  +++ + LGG++ E+ +AI      ++YG+ D  W+ GM+ EE  + V  AVS AI RD ASGG +R   I+
Sbjct:    4 NEKEMTGTTIIAIKYDDGVLIGADSRTSMGAYVSSRVTDKLTQITDKIFVCRSGSSADTQMISSYLRMYLSMYSQLEDSIPQVQRAAALASKIIYENPSLL-AGLIVAGYD--DKPRVFNISLGGSLTERDWAIGGSGSAFIYGYCDVNWRSGMSLEEGIRFVRNAVSCAINRDNASGGCIRMSAIS 187          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB7_DICDI (Proteasome subunit beta type-7 OS=Dictyostelium discoideum GN=psmB7 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.235e-22
Identity = 63/195 (32.31%), Postives = 101/195 (51.79%), Query Frame = 1
Query:  106 KMDLKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690
            K  L+M+ F      GTTI+GV Y GGVVLGAD+R + G  VA++  +KI  + DN+Y C +G+AAD+++ +  +   L  H +  G+   V  A  +++ + +  +  +   +I+GG D   G  ++ +   G+  + P+             F+  +K  MTKEEA  LV +A+S  I  D  SG  V    I
Sbjct:   22 KTGLRMKGFM---KTGTTIVGVVYKGGVVLGADTRATEGPIVADKNCEKIHYIADNIYCCGAGTAADTESATALISSKLKLHKLSTGKQTRVITALTMLKQMLFKYQGHISAALILGGID-INGPSLHTIYPHGSTDQLPYVTMGSGSLAAMAVFEAKYKNDMTKEEAIALVAEAISSGIFNDLGSGSNVDVTVI 212          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB7B_ARATH (Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.190e-21
Identity = 62/196 (31.63%), Postives = 103/196 (52.55%), Query Frame = 1
Query:   94 CFRGKMDLKMEDFNAPHSM--GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 675
            C R  M L  +   AP  +  GTTI+G+ +  GV+LGAD+R + G  VA++  +KI  +  N+Y C +G+AAD++ V+D V   L  H  Q G+ + V  A  L++   ++ +  +   +++GG D   G  ++ +   G+    PFA            F+  +KEG+T++E  +LV +A+   I  D  SG  V
Sbjct:   19 CKRNDM-LTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGHVSAALVLGGVD-ITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAEAICSGIFNDLGSGSNV 212          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB7A_ARATH (Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 61/196 (31.12%), Postives = 103/196 (52.55%), Query Frame = 1
Query:   94 CFRGKMDLKMEDFNAPHSM--GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 675
            C R  M L  +   AP  +  GTTI+G+ +  GV+LGAD+R + G  VA++  +KI  +  N+Y C +G+AAD++ V+D V   L  H  Q G+ + V  A  L++   ++ +  +   +++GG D   G  ++ +   G+    PFA            F+  +KEG+T++E  +LV +++   I  D  SG  V
Sbjct:   19 CKRNDM-LTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGHVSAALVLGGVD-ITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAESICSGIFNDLGSGSNV 212          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB7_PIG (Proteasome subunit beta type-7 OS=Sus scrofa GN=PSMB7 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.720e-19
Identity = 52/181 (28.73%), Postives = 95/181 (52.49%), Query Frame = 1
Query:  151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN 693
            GTTI GV Y  G+VLGAD+R + G+ VA++   KI  ++ N+Y C +G+AAD+   +  +   L  H++  G+   V  A  +++ + +  + ++   +++GG D   G  +Y +   G+  + P+             F+  ++  M +EEA+QLV +A++  I  D  SG  +    I+
Sbjct:   43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPEMEEEEAKQLVSEAIAAGIFNDLGSGSNIDLCVIS 222          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB7_RAT (Proteasome subunit beta type-7 OS=Rattus norvegicus GN=Psmb7 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.345e-19
Identity = 54/196 (27.55%), Postives = 100/196 (51.02%), Query Frame = 1
Query:  112 DLKMEDFNAPHSM--GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN 693
            D   + F  P +   GTTI GV Y  G+VLGAD+R + G+ VA++   KI  ++ N+Y C +G+AAD+   +  +   L  H++  G+   V  A  +++ + +  + ++   +++GG D   G  +Y +   G+  + P+             F+  ++  M +EEA++LV +A++  I  D  SG  +    I+
Sbjct:   28 DFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVIS 222          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB7_MOUSE (Proteasome subunit beta type-7 OS=Mus musculus GN=Psmb7 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.345e-19
Identity = 54/196 (27.55%), Postives = 100/196 (51.02%), Query Frame = 1
Query:  112 DLKMEDFNAPHSM--GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN 693
            D   + F  P +   GTTI GV Y  G+VLGAD+R + G+ VA++   KI  ++ N+Y C +G+AAD+   +  +   L  H++  G+   V  A  +++ + +  + ++   +++GG D   G  +Y +   G+  + P+             F+  ++  M +EEA++LV +A++  I  D  SG  +    I+
Sbjct:   28 DFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVIS 222          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB7_BOVIN (Proteasome subunit beta type-7 OS=Bos taurus GN=PSMB7 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 51/181 (28.18%), Postives = 95/181 (52.49%), Query Frame = 1
Query:  151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN 693
            GTTI GV Y  G+VLGAD+R + G+ VA++   KI  ++ N+Y C +G+AAD+   +  +   L  H++  G+   V  A  +++ + +  + ++   +++GG D   G  +Y +   G+  + P+             F+  ++  M +EEA++LV +A++  I  D  SG  +    I+
Sbjct:   43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVIS 222          
The following BLAST results are available for this feature:
BLAST of FC921256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PB6LB_SALSA2.241e-4043.72Proteasome subunit beta type-6-B like protein OS=S... [more]
PB6LA_SALSA3.822e-4043.72Proteasome subunit beta type-6-A like protein OS=S... [more]
PSB6_ENCCU1.151e-3642.25Probable proteasome subunit beta type-6 OS=Encepha... [more]
PSB7_DICDI1.235e-2232.31Proteasome subunit beta type-7 OS=Dictyostelium di... [more]
PSB7B_ARATH5.190e-2131.63Proteasome subunit beta type-7-B OS=Arabidopsis th... [more]
PSB7A_ARATH1.510e-2031.12Proteasome subunit beta type-7-A OS=Arabidopsis th... [more]
PSB7_PIG3.720e-1928.73Proteasome subunit beta type-7 OS=Sus scrofa GN=PS... [more]
PSB7_RAT6.345e-1927.55Proteasome subunit beta type-7 OS=Rattus norvegicu... [more]
PSB7_MOUSE6.345e-1927.55Proteasome subunit beta type-7 OS=Mus musculus GN=... [more]
PSB7_BOVIN8.286e-1928.18Proteasome subunit beta type-7 OS=Bos taurus GN=PS... [more]

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Properties
Property NameValue
Genbank descriptionC32102H10EF RVDevelopN Citrus clementina cDNA clone C32102H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921256 ID=FC921256; Name=FC921256; organism=Citrus clementina; type=EST; length=694bp
GATATCAAAATCTATCGTAAACAGGGGAGAATTAGAAGAAGCAAAACTTA
AAATTAAAATTGTTAAGGGCATTTAGAAATTGTGGTAAGTGAGTGTTTTA
GAGGAAAGATGGATCTGAAGATGGAAGATTTTAACGCGCCACACTCGATG
GGTACTACTATCATCGGCGTCACTTACAACGGCGGCGTTGTCCTCGGCGC
CGATTCTCGTACTAGCACCGGGGTGTATGTTGCTAACCGAGTTTCAGACA
AGATTACGCAGCTCACTGATAATGTCTACCTTTGCCGCTCGGGATCGGCT
GCAGATTCTCAGACTGTCTCCGACTATGTTCGCTACTTCCTTCATCAACA
CACGATACAGCTAGGGCAGCCTGCAACTGTTAAAGTTGCTGCCAATCTTG
TCAGGCTGCTATCCTACAATAACAAGAACTTTTTGCAAACTGGAATGATT
GTTGGCGGTTGGGATAAGTATGAAGGTGGTAAAATTTATGGAGTTCCTCT
TGGAGGAACAATAATTGAGCAGCCTTTTGCAATTGGAGGATCTGGCTCAA
GTTACCTGTATGGGTTTTTTGATCAGGCATGGAAAGAGGGAATGACCAAG
GAAGAAGCTGAGCAATTAGTGGTTAAAGCAGTTTCTCTTGCCATTGCGCG
TGATGGTGCTAGTGGAGGTGTTGTTCGAACCGTCACAATTAATC
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