FC921256

Overview
NameFC921256
Unique NameFC921256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14276 contig Ccv1_Contig14276:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB7_HUMAN (Proteasome subunit beta type-7 OS=Homo sapiens GN=PSMB7 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.082e-18
Identity = 51/181 (28.18%), Postives = 94/181 (51.93%), Query Frame = 1
Query:  151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN 693
            GTTI GV Y  G+VLGAD+R + G+ VA++   KI  ++ N+Y C +G+AAD+   +  +   L  H++  G+   V  A  +++ + +  + ++   +++GG D   G  +Y +   G+  + P+             F+  ++  M +EEA+ LV +A++  I  D  SG  +    I+
Sbjct:   43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVIS 222          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB10_BOVIN (Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 53/186 (28.49%), Postives = 92/186 (49.46%), Query Frame = 1
Query:  139 PHSM--GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690
            PH+   GTTI G+ +  GV+LGAD+R +    VA+++ +KI  +   +Y C +G AAD++  +      +  H +  G+   V     ++R   +  + ++   +IVGG D + G ++Y V   G+    PF              +  ++  MT E A++L+V+A++  I  D  SGG V    I
Sbjct:   33 PHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKICEKIHFIAPKIYCCGAGVAADAEMTTRMAASNMELHALSTGRECRVATVTRMLRQTLFRYQGYVGASLIVGGVD-FTGPQLYSVHPHGSYSRLPFTALGSGQDAAIAVLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGGNVDACVI 217          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB10_HUMAN (Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-17
Identity = 56/186 (30.11%), Postives = 90/186 (48.39%), Query Frame = 1
Query:  139 PHSM--GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690
            PH+   GTTI G+ +  GV+LGAD+R +    VA++  +KI  +   +Y C +G AAD++  +  V   +  H +  G+   V     ++R   +  +  +   +IVGG D   G ++YGV   G+    PF              +  ++  MT E A+ L+V+AV+  I  D  SGG V    I
Sbjct:   33 PHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVD-LTGPQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVI 217          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSMB_SULSO (Proteasome subunit beta OS=Sulfolobus solfataricus GN=psmB PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.481e-17
Identity = 54/177 (30.51%), Postives = 91/177 (51.41%), Query Frame = 1
Query:  151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVK-VAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASG-GVV 675
            GTT +G+  N GV+L AD R S G +VAN++  K+  +TD + +  +GS AD Q + D ++   H ++I    P ++K +A  L  +LS          +++GG+D  +  +++ +   G I E+ +           G  +  +   MT +EA  L  +AV  AI RD  +G GV+
Sbjct:   14 GTTTVGIRVNDGVILAADRRASAGFFVANKMVRKVLYITDKIGITTAGSVADLQFIYDVLKNIYHYNSITKYGPISIKGIATRLANVLSATKYFPYIVQILIGGYD--DQPRLFNLDYLGDITEENYVATGSGSPVAMGVLEDEYNPKMTLDEAADLAKRAVFSAIKRDSFTGTGVI 188          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB10_RAT (Proteasome subunit beta type-10 OS=Rattus norvegicus GN=Psmb10 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 51/180 (28.33%), Postives = 86/180 (47.78%), Query Frame = 1
Query:  151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690
            GTTI G+ +  GV+LGAD+R +    VA++  +KI  +   +Y C +G AAD++  +      +  H +  G+   V     ++R   +  +  +   +IVGG D   G ++Y V   G+    PF              +  ++  MT E A++L+V+A++  I  D  SGG V    I
Sbjct:   39 GTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVD-LNGPQLYSVHPHGSYSRLPFTALGSGQDAAVALLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGGSVDACVI 217          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB10_MOUSE (Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 52/186 (27.96%), Postives = 89/186 (47.85%), Query Frame = 1
Query:  139 PHSM--GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690
            PH+   GTTI G+ +  GV+LGAD+R +    VA++  +KI  +   +Y C +G AAD++  +      +  H +  G+   V     ++R   +  +  +   ++VGG D   G ++Y V   G+    PF              +  ++  MT E A++L+V+A++  I  D  SGG V    I
Sbjct:   33 PHARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVD-LNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVI 217          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB5_SPIOL (Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.323e-16
Identity = 57/176 (32.39%), Postives = 87/176 (49.43%), Query Frame = 1
Query:  151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 675
            GTT +   +  GV++ ADSR S G Y++++   KI ++   +    +G AAD Q     +      H +   +  +V  A+ L+  + YN +   L  G ++ GWD+   G  Y    GG +    F++      Y YG  D  +K  MT EEA +L  +A+  A  RDGASGGVV
Sbjct:   55 GTTTLAFIFKHGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYNYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGMRFSVGSGSP-YAYGVLDNGYKYDMTVEEASELARRAIYHATYRDGASGGVV 229          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB5A_ARATH (Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.323e-16
Identity = 55/178 (30.90%), Postives = 89/178 (50.00%), Query Frame = 1
Query:  142 HSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGV 672
            H+ GTT +   + GGV++ ADSR S G Y++++   KI ++   +    +G AAD Q     +      H +   +  +V  A+ L+  + Y+ +   L  G ++ GWD+   G  Y    GG +    F++      Y YG  D  +K  M+ EEA +L  +++  A  RDGASGGV
Sbjct:   54 HAKGTTTLAFIFKGGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSV-GSGSPYAYGVLDSGYKYDMSVEEASELARRSIYHATFRDGASGGV 230          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.947e-16
Identity = 58/181 (32.04%), Postives = 88/181 (48.62%), Query Frame = 1
Query:  151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTG-MIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690
            GTT +G+    GVVL AD R S G  +  R   KI ++ +++ +  +G   D   +   +R     +  Q G+  +VK  A L+  +    K F      +VGG+D  E  K+Y V + G I E  +A       + Y   D  +K+ +T EE  +L VKA++ AI RD  SG  +  VTI
Sbjct:   10 GTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYLAWFLVGGYD--EKPKLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRDVFSGDGILVVTI 188          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 54/188 (28.72%), Postives = 93/188 (49.47%), Query Frame = 1
Query:  133 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLV-RLLSYNNKNFLQTGMIVGGWDKYEGGKIYGV-PLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690
            N  +  GTT +GV    G+VL ++ R + G ++A++ + K+ Q+ D V +  +GS  D+Q +   V      + ++  +  T+K    L+   LS N    +   +++GG DK  G  IY +  +GG+I E   +         YG  +  ++E MT +E   L ++A+  A  RD ASG  +  V I
Sbjct:    3 NDKYLKGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDK-NGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSASGENIDVVVI 189          
The following BLAST results are available for this feature:
BLAST of FC921256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PSB7_HUMAN1.082e-1828.18Proteasome subunit beta type-7 OS=Homo sapiens GN=... [more]
PSB10_BOVIN2.411e-1828.49Proteasome subunit beta type-10 OS=Bos taurus GN=P... [more]
PSB10_HUMAN1.563e-1730.11Proteasome subunit beta type-10 OS=Homo sapiens GN... [more]
PSMB_SULSO3.481e-1730.51Proteasome subunit beta OS=Sulfolobus solfataricus... [more]
PSB10_RAT7.756e-1728.33Proteasome subunit beta type-10 OS=Rattus norvegic... [more]
PSB10_MOUSE1.013e-1627.96Proteasome subunit beta type-10 OS=Mus musculus GN... [more]
PSB5_SPIOL1.323e-1632.39Proteasome subunit beta type-5 OS=Spinacia olerace... [more]
PSB5A_ARATH1.323e-1630.90Proteasome subunit beta type-5-A OS=Arabidopsis th... [more]
PSMB_PYRHO2.947e-1632.04Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]
PSMB_METTE1.120e-1528.72Proteasome subunit beta OS=Methanosarcina thermoph... [more]

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Properties
Property NameValue
Genbank descriptionC32102H10EF RVDevelopN Citrus clementina cDNA clone C32102H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921256 ID=FC921256; Name=FC921256; organism=Citrus clementina; type=EST; length=694bp
GATATCAAAATCTATCGTAAACAGGGGAGAATTAGAAGAAGCAAAACTTA
AAATTAAAATTGTTAAGGGCATTTAGAAATTGTGGTAAGTGAGTGTTTTA
GAGGAAAGATGGATCTGAAGATGGAAGATTTTAACGCGCCACACTCGATG
GGTACTACTATCATCGGCGTCACTTACAACGGCGGCGTTGTCCTCGGCGC
CGATTCTCGTACTAGCACCGGGGTGTATGTTGCTAACCGAGTTTCAGACA
AGATTACGCAGCTCACTGATAATGTCTACCTTTGCCGCTCGGGATCGGCT
GCAGATTCTCAGACTGTCTCCGACTATGTTCGCTACTTCCTTCATCAACA
CACGATACAGCTAGGGCAGCCTGCAACTGTTAAAGTTGCTGCCAATCTTG
TCAGGCTGCTATCCTACAATAACAAGAACTTTTTGCAAACTGGAATGATT
GTTGGCGGTTGGGATAAGTATGAAGGTGGTAAAATTTATGGAGTTCCTCT
TGGAGGAACAATAATTGAGCAGCCTTTTGCAATTGGAGGATCTGGCTCAA
GTTACCTGTATGGGTTTTTTGATCAGGCATGGAAAGAGGGAATGACCAAG
GAAGAAGCTGAGCAATTAGTGGTTAAAGCAGTTTCTCTTGCCATTGCGCG
TGATGGTGCTAGTGGAGGTGTTGTTCGAACCGTCACAATTAATC
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