FC921256
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB7_HUMAN (Proteasome subunit beta type-7 OS=Homo sapiens GN=PSMB7 PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.082e-18 Identity = 51/181 (28.18%), Postives = 94/181 (51.93%), Query Frame = 1 Query: 151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN 693 GTTI GV Y G+VLGAD+R + G+ VA++ KI ++ N+Y C +G+AAD+ + + L H++ G+ V A +++ + + + ++ +++GG D G +Y + G+ + P+ F+ ++ M +EEA+ LV +A++ I D SG + I+ Sbjct: 43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVIS 222
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB10_BOVIN (Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18 Identity = 53/186 (28.49%), Postives = 92/186 (49.46%), Query Frame = 1 Query: 139 PHSM--GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690 PH+ GTTI G+ + GV+LGAD+R + VA+++ +KI + +Y C +G AAD++ + + H + G+ V ++R + + ++ +IVGG D + G ++Y V G+ PF + ++ MT E A++L+V+A++ I D SGG V I Sbjct: 33 PHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKICEKIHFIAPKIYCCGAGVAADAEMTTRMAASNMELHALSTGRECRVATVTRMLRQTLFRYQGYVGASLIVGGVD-FTGPQLYSVHPHGSYSRLPFTALGSGQDAAIAVLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGGNVDACVI 217
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB10_HUMAN (Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-17 Identity = 56/186 (30.11%), Postives = 90/186 (48.39%), Query Frame = 1 Query: 139 PHSM--GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690 PH+ GTTI G+ + GV+LGAD+R + VA++ +KI + +Y C +G AAD++ + V + H + G+ V ++R + + + +IVGG D G ++YGV G+ PF + ++ MT E A+ L+V+AV+ I D SGG V I Sbjct: 33 PHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVD-LTGPQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVI 217
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSMB_SULSO (Proteasome subunit beta OS=Sulfolobus solfataricus GN=psmB PE=3 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 3.481e-17 Identity = 54/177 (30.51%), Postives = 91/177 (51.41%), Query Frame = 1 Query: 151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVK-VAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASG-GVV 675 GTT +G+ N GV+L AD R S G +VAN++ K+ +TD + + +GS AD Q + D ++ H ++I P ++K +A L +LS +++GG+D + +++ + G I E+ + G + + MT +EA L +AV AI RD +G GV+ Sbjct: 14 GTTTVGIRVNDGVILAADRRASAGFFVANKMVRKVLYITDKIGITTAGSVADLQFIYDVLKNIYHYNSITKYGPISIKGIATRLANVLSATKYFPYIVQILIGGYD--DQPRLFNLDYLGDITEENYVATGSGSPVAMGVLEDEYNPKMTLDEAADLAKRAVFSAIKRDSFTGTGVI 188
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB10_RAT (Proteasome subunit beta type-10 OS=Rattus norvegicus GN=Psmb10 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17 Identity = 51/180 (28.33%), Postives = 86/180 (47.78%), Query Frame = 1 Query: 151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690 GTTI G+ + GV+LGAD+R + VA++ +KI + +Y C +G AAD++ + + H + G+ V ++R + + + +IVGG D G ++Y V G+ PF + ++ MT E A++L+V+A++ I D SGG V I Sbjct: 39 GTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVD-LNGPQLYSVHPHGSYSRLPFTALGSGQDAAVALLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGGSVDACVI 217
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB10_MOUSE (Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16 Identity = 52/186 (27.96%), Postives = 89/186 (47.85%), Query Frame = 1 Query: 139 PHSM--GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690 PH+ GTTI G+ + GV+LGAD+R + VA++ +KI + +Y C +G AAD++ + + H + G+ V ++R + + + ++VGG D G ++Y V G+ PF + ++ MT E A++L+V+A++ I D SGG V I Sbjct: 33 PHARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVD-LNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVI 217
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB5_SPIOL (Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.323e-16 Identity = 57/176 (32.39%), Postives = 87/176 (49.43%), Query Frame = 1 Query: 151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 675 GTT + + GV++ ADSR S G Y++++ KI ++ + +G AAD Q + H + + +V A+ L+ + YN + L G ++ GWD+ G Y GG + F++ Y YG D +K MT EEA +L +A+ A RDGASGGVV Sbjct: 55 GTTTLAFIFKHGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYNYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGMRFSVGSGSP-YAYGVLDNGYKYDMTVEEASELARRAIYHATYRDGASGGVV 229
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB5A_ARATH (Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.323e-16 Identity = 55/178 (30.90%), Postives = 89/178 (50.00%), Query Frame = 1 Query: 142 HSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGV 672 H+ GTT + + GGV++ ADSR S G Y++++ KI ++ + +G AAD Q + H + + +V A+ L+ + Y+ + L G ++ GWD+ G Y GG + F++ Y YG D +K M+ EEA +L +++ A RDGASGGV Sbjct: 54 HAKGTTTLAFIFKGGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSV-GSGSPYAYGVLDSGYKYDMSVEEASELARRSIYHATFRDGASGGV 230
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.947e-16 Identity = 58/181 (32.04%), Postives = 88/181 (48.62%), Query Frame = 1 Query: 151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTG-MIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690 GTT +G+ GVVL AD R S G + R KI ++ +++ + +G D + +R + Q G+ +VK A L+ + K F +VGG+D E K+Y V + G I E +A + Y D +K+ +T EE +L VKA++ AI RD SG + VTI Sbjct: 10 GTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYLAWFLVGGYD--EKPKLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRDVFSGDGILVVTI 188
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.120e-15 Identity = 54/188 (28.72%), Postives = 93/188 (49.47%), Query Frame = 1 Query: 133 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLV-RLLSYNNKNFLQTGMIVGGWDKYEGGKIYGV-PLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 690 N + GTT +GV G+VL ++ R + G ++A++ + K+ Q+ D V + +GS D+Q + V + ++ + T+K L+ LS N + +++GG DK G IY + +GG+I E + YG + ++E MT +E L ++A+ A RD ASG + V I Sbjct: 3 NDKYLKGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDK-NGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSASGENIDVVVI 189 The following BLAST results are available for this feature:
BLAST of FC921256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921256 ID=FC921256; Name=FC921256; organism=Citrus clementina; type=EST; length=694bpback to top |