FC921256
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB5_RAT (Proteasome subunit beta type-5 OS=Rattus norvegicus GN=Psmb5 PE=1 SV=3) HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12 Identity = 48/176 (27.27%), Postives = 80/176 (45.45%), Query Frame = 1 Query: 151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 675 GTT + + GV++ ADSR + G Y+A++ K+ ++ + +G AAD + + ++ + +V A+ L+ + Y K L G ++ GWDK G Y G I F++ Y +G D+ + + EEA L +A+ A RD SGG V Sbjct: 59 GTTTLAFKFQHGVIVAADSRATAGPYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSV-GSGSVYAFGVMDRGYSYDLQVEEAYDLARRAIYQATYRDAYSGGAV 233
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB11_MOUSE (Proteasome subunit beta type-11 OS=Mus musculus GN=Psmb11 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11 Identity = 54/176 (30.68%), Postives = 80/176 (45.45%), Query Frame = 1 Query: 151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQ-PATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 675 GTT + + GV+ AD+R+S G YVA S K+ + + SG++AD T +R L ++ GQ P+ A L ++S L + GWD + G ++ V GT ++ Y YG D+ + MT +EA L AV+ A RD SGG V Sbjct: 49 GTTTLAFRFRHGVIAAADTRSSCGSYVACPASRKVIPVHQRLLGTTSGTSADCATWYRVLRRELRLRELREGQLPSVAGTAKLLAAMMSCYRGLDLCVATALCGWD-HSGPALFYVYSDGTCLQGDIFSVGSGSPYAYGVLDRGYHYDMTIQEAYTLARCAVAHATHRDAYSGGSV 223
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB11_HUMAN (Proteasome subunit beta type-11 OS=Homo sapiens GN=PSMB11 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11 Identity = 52/176 (29.55%), Postives = 84/176 (47.73%), Query Frame = 1 Query: 151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 675 GTT + + GV+ AD+R+S G YVA S K+ + ++ SG++AD T ++ L ++ GQ +V AA L+ + + L + GWD+ G +++ V GT ++ Y YG D+ ++ M+ +EA L AV+ A RD SGG V Sbjct: 49 GTTTLAFRFRHGVIAAADTRSSCGSYVACPASCKVIPVHQHLLGTTSGTSADCATWYRVLQRELRLRELREGQLPSVASAAKLLSAMMSQYRGLDLCVATALCGWDR-SGPELFYVYSDGTRLQGDIFSVGSGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATHRDAYSGGSV 223
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB8_BOVIN (Proteasome subunit beta type-8 OS=Bos taurus GN=PSMB8 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11 Identity = 49/176 (27.84%), Postives = 81/176 (46.02%), Query Frame = 1 Query: 151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 675 GTT + + GV++ DSR S G Y+A +K+ ++ + SG AAD + + ++ G+ +V A+ L+ + + L G ++ GWDK +G +Y V GT + + YG D ++ ++ EEA L +A+ A RD SGGVV Sbjct: 72 GTTTLAFKFQHGVIVAVDSRASAGNYIATLKVNKVIEINPYLLGTMSGCAADCLYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDK-KGPGLYYVDENGTRLSGNMFSTGSGNSHAYGVMDSGYRPDLSIEEAYDLGRRAIVHATHRDSYSGGVV 246
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB5_SCHPO (Proteasome subunit beta type-5 OS=Schizosaccharomyces pombe GN=pts1 PE=2 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11 Identity = 46/182 (25.27%), Postives = 85/182 (46.70%), Query Frame = 1 Query: 151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN 693 GTT + Y G+V+ DSR S G +A++ K+ ++ + +G AAD Q + H ++ + +V A+ ++ ++Y+ K + L G ++ G K G +Y + GT ++ + YG D ++ ++K+EA L +++ A RD SGG V I+ Sbjct: 61 GTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAGTGK-GGTALYYIDSDGTRLKGDLFSVGSGSTFAYGVLDSGYRWDLSKQEALYLAQRSIVAATHRDAYSGGSVNLYHID 241 The following BLAST results are available for this feature:
BLAST of FC921256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921256 ID=FC921256; Name=FC921256; organism=Citrus clementina; type=EST; length=694bpback to top |