FC921256

Overview
NameFC921256
Unique NameFC921256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14276 contig Ccv1_Contig14276:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB5_RAT (Proteasome subunit beta type-5 OS=Rattus norvegicus GN=Psmb5 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 48/176 (27.27%), Postives = 80/176 (45.45%), Query Frame = 1
Query:  151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 675
            GTT +   +  GV++ ADSR + G Y+A++   K+ ++   +    +G AAD       +      + ++  +  +V  A+ L+  + Y  K   L  G ++ GWDK   G  Y    G  I    F++      Y +G  D+ +   +  EEA  L  +A+  A  RD  SGG V
Sbjct:   59 GTTTLAFKFQHGVIVAADSRATAGPYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSV-GSGSVYAFGVMDRGYSYDLQVEEAYDLARRAIYQATYRDAYSGGAV 233          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB11_MOUSE (Proteasome subunit beta type-11 OS=Mus musculus GN=Psmb11 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 54/176 (30.68%), Postives = 80/176 (45.45%), Query Frame = 1
Query:  151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQ-PATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 675
            GTT +   +  GV+  AD+R+S G YVA   S K+  +   +    SG++AD  T    +R  L    ++ GQ P+    A  L  ++S      L     + GWD + G  ++ V   GT ++           Y YG  D+ +   MT +EA  L   AV+ A  RD  SGG V
Sbjct:   49 GTTTLAFRFRHGVIAAADTRSSCGSYVACPASRKVIPVHQRLLGTTSGTSADCATWYRVLRRELRLRELREGQLPSVAGTAKLLAAMMSCYRGLDLCVATALCGWD-HSGPALFYVYSDGTCLQGDIFSVGSGSPYAYGVLDRGYHYDMTIQEAYTLARCAVAHATHRDAYSGGSV 223          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB11_HUMAN (Proteasome subunit beta type-11 OS=Homo sapiens GN=PSMB11 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 52/176 (29.55%), Postives = 84/176 (47.73%), Query Frame = 1
Query:  151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 675
            GTT +   +  GV+  AD+R+S G YVA   S K+  +  ++    SG++AD  T    ++  L    ++ GQ  +V  AA L+  +    +   L     + GWD+  G +++ V   GT ++           Y YG  D+ ++  M+ +EA  L   AV+ A  RD  SGG V
Sbjct:   49 GTTTLAFRFRHGVIAAADTRSSCGSYVACPASCKVIPVHQHLLGTTSGTSADCATWYRVLQRELRLRELREGQLPSVASAAKLLSAMMSQYRGLDLCVATALCGWDR-SGPELFYVYSDGTRLQGDIFSVGSGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATHRDAYSGGSV 223          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB8_BOVIN (Proteasome subunit beta type-8 OS=Bos taurus GN=PSMB8 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 49/176 (27.84%), Postives = 81/176 (46.02%), Query Frame = 1
Query:  151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVV 675
            GTT +   +  GV++  DSR S G Y+A    +K+ ++   +    SG AAD       +      + ++ G+  +V  A+ L+  +    +   L  G ++ GWDK +G  +Y V   GT +            + YG  D  ++  ++ EEA  L  +A+  A  RD  SGGVV
Sbjct:   72 GTTTLAFKFQHGVIVAVDSRASAGNYIATLKVNKVIEINPYLLGTMSGCAADCLYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDK-KGPGLYYVDENGTRLSGNMFSTGSGNSHAYGVMDSGYRPDLSIEEAYDLGRRAIVHATHRDSYSGGVV 246          
BLAST of FC921256 vs. ExPASy Swiss-Prot
Match: PSB5_SCHPO (Proteasome subunit beta type-5 OS=Schizosaccharomyces pombe GN=pts1 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 46/182 (25.27%), Postives = 85/182 (46.70%), Query Frame = 1
Query:  151 GTTIIGVTYNGGVVLGADSRTSTGVYVANRVSDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN 693
            GTT +   Y  G+V+  DSR S G  +A++   K+ ++   +    +G AAD Q     +      H ++  +  +V  A+ ++  ++Y+ K + L  G ++ G  K  G  +Y +   GT ++           + YG  D  ++  ++K+EA  L  +++  A  RD  SGG V    I+
Sbjct:   61 GTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAGTGK-GGTALYYIDSDGTRLKGDLFSVGSGSTFAYGVLDSGYRWDLSKQEALYLAQRSIVAATHRDAYSGGSVNLYHID 241          
The following BLAST results are available for this feature:
BLAST of FC921256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PSB5_RAT7.512e-1227.27Proteasome subunit beta type-5 OS=Rattus norvegicu... [more]
PSB11_MOUSE1.281e-1130.68Proteasome subunit beta type-11 OS=Mus musculus GN... [more]
PSB11_HUMAN1.281e-1129.55Proteasome subunit beta type-11 OS=Homo sapiens GN... [more]
PSB8_BOVIN1.674e-1127.84Proteasome subunit beta type-8 OS=Bos taurus GN=PS... [more]
PSB5_SCHPO3.728e-1125.27Proteasome subunit beta type-5 OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionC32102H10EF RVDevelopN Citrus clementina cDNA clone C32102H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921256 ID=FC921256; Name=FC921256; organism=Citrus clementina; type=EST; length=694bp
GATATCAAAATCTATCGTAAACAGGGGAGAATTAGAAGAAGCAAAACTTA
AAATTAAAATTGTTAAGGGCATTTAGAAATTGTGGTAAGTGAGTGTTTTA
GAGGAAAGATGGATCTGAAGATGGAAGATTTTAACGCGCCACACTCGATG
GGTACTACTATCATCGGCGTCACTTACAACGGCGGCGTTGTCCTCGGCGC
CGATTCTCGTACTAGCACCGGGGTGTATGTTGCTAACCGAGTTTCAGACA
AGATTACGCAGCTCACTGATAATGTCTACCTTTGCCGCTCGGGATCGGCT
GCAGATTCTCAGACTGTCTCCGACTATGTTCGCTACTTCCTTCATCAACA
CACGATACAGCTAGGGCAGCCTGCAACTGTTAAAGTTGCTGCCAATCTTG
TCAGGCTGCTATCCTACAATAACAAGAACTTTTTGCAAACTGGAATGATT
GTTGGCGGTTGGGATAAGTATGAAGGTGGTAAAATTTATGGAGTTCCTCT
TGGAGGAACAATAATTGAGCAGCCTTTTGCAATTGGAGGATCTGGCTCAA
GTTACCTGTATGGGTTTTTTGATCAGGCATGGAAAGAGGGAATGACCAAG
GAAGAAGCTGAGCAATTAGTGGTTAAAGCAGTTTCTCTTGCCATTGCGCG
TGATGGTGCTAGTGGAGGTGTTGTTCGAACCGTCACAATTAATC
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