FC921258

Overview
NameFC921258
Unique NameFC921258
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11587 contig Ccv1_Contig11587:155..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN13_ORYSI (Endoglucanase 13 OS=Oryza sativa subsp. indica GN=GLU6 PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.203e-26
Identity = 55/120 (45.83%), Postives = 80/120 (66.67%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKLVNNK-ISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVXVGNPDKDH 686
            YA A    + FF+ Q+SGKL +++ + WRGDSAL DG   G+DL  G YD+GDH+KFG PMA+  T+LSW ++E+  +M   ++L    D+++W T+Y + AH + N L V VG+ D DH
Sbjct:   39 YAGAFDKCLLFFEAQRSGKLPDDRLVRWRGDSALTDGFSQGVDLVGGYYDSGDHVKFGLPMAYAVTMLSWGVVEFEKEMVDGNKLHRVLDAIRWGTNYFVKAHTQHNALWVQVGDGDSDH 158          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUNI_CLOTH (Endoglucanase 1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=celI PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.571e-26
Identity = 55/121 (45.45%), Postives = 79/121 (65.29%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKLVNN--KISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVXVGNPDKDH 686
            Y EAL+ A+ F++ Q+SGKL  +  +++WRGDS L DG+D G+DLT G YDAGDH+KF  PM+++A +L WA+ EY D      Q     +++KW  DY I  HP+++V    VG+   DH
Sbjct:   78 YGEALQKAIFFYECQRSGKLDPSTLRLNWRGDSGLDDGKDAGIDLTGGWYDAGDHVKFNLPMSYSAAMLGWAVYEYEDAFKQSGQYNHILNNIKWACDYFIKCHPEKDVYYYQVGDGHADH 198          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN1_PERAE (Endoglucanase 1 OS=Persea americana GN=CEL1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.571e-26
Identity = 60/126 (47.62%), Postives = 86/126 (68.25%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKL-VNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAH-PKENVLIVXVGNPDKDHNVGKR 701
            Y++AL+ ++ FF+ Q+SGKL  N +++WRGDS L DG    +DL  G YDAGD++KFG PMAFT T+L+W I+E+G  M   +Q++ A+ +L+W TDYL+ A     N L V VG P+ DH   +R
Sbjct:   30 YSDALEKSILFFEGQRSGKLPTNQRLTWRGDSGLSDGSSYHVDLVGGYYDAGDNLKFGLPMAFTTTMLAWGIIEFGCLMP--EQVENARAALRWSTDYLLKASTATSNSLYVQVGEPNADHRCWER 153          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN16_ARATH (Endoglucanase 16 OS=Arabidopsis thaliana GN=At3g43860 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.571e-26
Identity = 54/125 (43.20%), Postives = 84/125 (67.20%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVXVGNPDKDHNVGKR 701
            Y +AL  ++ F + Q+SGKL  NN++ WRGDSAL DG+ + +DL+ G YDAGD++K+G PMAFT T L+W+ + Y  ++    +L+ A+ +++W TDY +    ++N L V VG+P+ DH    R
Sbjct:   35 YKDALTKSLIFLEAQRSGKLPPNNRVPWRGDSALDDGKLVNVDLSGGYYDAGDNVKYGLPMAFTITTLAWSTITYEKELRATGELENARAAIRWGTDYFLKCASRKNRLYVQVGDPNADHQCWAR 159          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN5_ARATH (Endoglucanase 5 OS=Arabidopsis thaliana GN=At1g48930 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.969e-26
Identity = 58/125 (46.40%), Postives = 77/125 (61.60%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKL-VNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVXVGNPDKDHNVGKR 701
            Y  AL     FF+ Q+SGKL    ++ WRG S LKDG   G+ L  G YDAGDH+KFG PMAF  T+LSWA ++   ++   +Q+Q    S++W TDY I AHP+ NVL   VG+ + DH   +R
Sbjct:   31 YGSALDKTFLFFEAQRSGKLPAAQRVKWRGPSGLKDGLAQGVSLEGGYYDAGDHVKFGLPMAFAVTMLSWAAVDNRKELSSSNQMQQTLWSIRWGTDYFIKAHPQPNVLWGQVGDGESDHYCWER 155          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN20_ORYSJ (Endoglucanase 20 OS=Oryza sativa subsp. japonica GN=GLU15 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.969e-26
Identity = 55/125 (44.00%), Postives = 82/125 (65.60%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKL-VNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVXVGNPDKDHNVGKR 701
            Y +AL  A+ FF+ Q+SG+L  N + +WRGDSAL DGR+  ++LT G YDAGD++KFG+PMAFT T+L W+ +EYG  +    +L   + +++W  D+L+ AH     L   VG+ + DH   +R
Sbjct:   41 YGDALAKAILFFEGQRSGRLPANQRATWRGDSALTDGREENVNLTGGYYDAGDNVKFGYPMAFTVTLLGWSAVEYGAAVAAAGELGNLRAAIRWGADFLLRAHASPTTLYTQVGDGNADHQCWER 165          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN20_ARATH (Endoglucanase 20 OS=Arabidopsis thaliana GN=At4g23560 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.969e-26
Identity = 55/126 (43.65%), Postives = 86/126 (68.25%), Query Frame = 3
Query:  327 KYAEALKVAMQFFDVQKSGKL-VNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVXVGNPDKDHNVGKR 701
            +Y +AL  ++ FF+ Q+SGKL  N ++ WR DSAL DG    ++L  G YDAGD++KF +PM+FT T+LSWA +EY +++  V+QL   + ++KW TD+++ AH   N+L   VG+ + DH+  +R
Sbjct:   23 EYGDALNKSILFFEGQRSGKLPTNQRVKWRADSALSDGSLANVNLIGGYYDAGDNVKFVWPMSFTTTLLSWAAIEYQNEISSVNQLGYLRSTIKWGTDFILRAHTSPNMLYTQVGDGNSDHSCWER 148          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN3_ORYSJ (Endoglucanase 3 OS=Oryza sativa subsp. japonica GN=GLU8 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.796e-26
Identity = 56/125 (44.80%), Postives = 88/125 (70.40%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVXVGNPDKDHNVGKR 701
            Y +AL  ++ FF+ Q+SGKL  + ++SWRGDS L DG  + +DL  G YDAGD+MKFGFP+AF+ T+L+W+++E+G  M    +LQ A+D+++W +DYL+ A    + + V VG+ ++DH   +R
Sbjct:   36 YRDALTKSILFFEGQRSGKLPPSQRVSWRGDSGLSDGSSIKVDLVGGYYDAGDNMKFGFPLAFSMTMLAWSVVEFGGLMK--GELQHARDAVRWGSDYLLKATAHPDTVYVQVGDANRDHACWER 158          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN_PHAVU (Endoglucanase OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.737e-25
Identity = 55/125 (44.00%), Postives = 85/125 (68.00%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKLVNN-KISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVXVGNPDKDHNVGKR 701
            YA+AL  A+ FF+ Q+SGKL ++ ++ WR DSAL DG+   ++L  G YDAGD++KFG+PMAF+ ++LSWA +EY  ++  V+QL   Q +++W  D+++ AH     L   VG+ + DHN  +R
Sbjct:   41 YADALAKAILFFEGQRSGKLPSSQRVKWREDSALSDGKLQNVNLMGGYYDAGDNVKFGWPMAFSTSLLSWAAVEYESEISSVNQLGYLQSAIRWGADFMLRAHTSPTTLYTQVGDGNADHNCWER 165          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN18_ARATH (Endoglucanase 18 OS=Arabidopsis thaliana GN=At4g09740 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.737e-25
Identity = 54/125 (43.20%), Postives = 84/125 (67.20%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKL-VNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVXVGNPDKDHNVGKR 701
            Y +AL  ++ FF+ Q+SGKL  N ++ WR DS L DG    ++L  G YDAGD++KF +PM+FT T+LSWA LEY +++  V+QL   + ++KW T++++ AH   N+L   VG+ + DH+  +R
Sbjct:   24 YGDALNKSILFFEGQRSGKLPTNQRVKWRADSGLSDGASANVNLIGGYYDAGDNVKFVWPMSFTTTLLSWAALEYQNEITFVNQLGYLRSTIKWGTNFILRAHTSTNMLYTQVGDGNSDHSCWER 148          
The following BLAST results are available for this feature:
BLAST of FC921258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
GUN13_ORYSI1.203e-2645.83Endoglucanase 13 OS=Oryza sativa subsp. indica GN=... [more]
GUNI_CLOTH1.571e-2645.45Endoglucanase 1 OS=Clostridium thermocellum (strai... [more]
GUN1_PERAE1.571e-2647.62Endoglucanase 1 OS=Persea americana GN=CEL1 PE=2 S... [more]
GUN16_ARATH4.571e-2643.20Endoglucanase 16 OS=Arabidopsis thaliana GN=At3g43... [more]
GUN5_ARATH5.969e-2646.40Endoglucanase 5 OS=Arabidopsis thaliana GN=At1g489... [more]
GUN20_ORYSJ5.969e-2644.00Endoglucanase 20 OS=Oryza sativa subsp. japonica G... [more]
GUN20_ARATH5.969e-2643.65Endoglucanase 20 OS=Arabidopsis thaliana GN=At4g23... [more]
GUN3_ORYSJ7.796e-2644.80Endoglucanase 3 OS=Oryza sativa subsp. japonica GN... [more]
GUN_PHAVU1.737e-2544.00Endoglucanase OS=Phaseolus vulgaris PE=2 SV=2[more]
GUN18_ARATH1.737e-2543.20Endoglucanase 18 OS=Arabidopsis thaliana GN=At4g09... [more]

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Properties
Property NameValue
Genbank descriptionC32102H12EF RVDevelopN Citrus clementina cDNA clone C32102H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921258 ID=FC921258; Name=FC921258; organism=Citrus clementina; type=EST; length=742bp
GAGCCAAATTAAGCTCCTTACCACTCACATTTCACCCACTAGAGAGAAAT
ACGGTGCTGCGTTTTTCACCGTTTGAAGACCCTACGCACAAAGCTCTTAC
TCTCTTCACCCAATGCCGGCATTTTGAGTTAGATTTAGATCTGAGAACTT
GACGGCATTGTGTTAAAATGGGGGAGAAATCAAAGTCCAAGGGTTGTTTC
GGATGGTTCTTGGTCCTAGTCCTATTGGCTCTAGTTGTTGGCGCAATTGT
TTACACTATTAAAAAGAAAACAAGTCACTCTGATAAACCGGCTCCGGTTC
CCGGTCCCCCCGGCGCCGTCGAGAAAAAGTATGCTGAAGCCCTCAAAGTC
GCAATGCAGTTCTTCGACGTACAAAAATCGGGAAAGTTAGTGAATAATAA
GATATCATGGAGAGGGGATTCGGCTCTTAAAGATGGAAGAGACATGGGTT
TGGATCTCACAAAAGGCATGTATGATGCTGGGGATCATATGAAGTTTGGG
TTTCCGATGGCTTTTACTGCGACTGTGTTGTCGTGGGCCATCCTTGAGTA
TGGAGATCAGATGGACGTTGTGGATCAGTTGCAACCAGCTCAGGATTCTC
TCAAGTGGATCACTGATTATCTTATCAGTGCTCATCCCAAAGAGAATGTC
CTTATTGTTCANGTGGGCAATCCTGATAAGGACCACAATGTTGGGAAAAG
ACTGAAGCATGACTGAGAGAGACACTCACTCAGTCACACATC
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