FC921258

Overview
NameFC921258
Unique NameFC921258
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11587 contig Ccv1_Contig11587:155..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN9_ARATH (Endoglucanase 9 OS=Arabidopsis thaliana GN=CEL3 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.773e-23
Identity = 59/126 (46.83%), Postives = 79/126 (62.70%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKLVNNK-ISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLIS-AHPKENVLIVXVGNPDKDHNVGKR 701
            Y EAL  ++ FF  Q+SG L   + ISWR  S L DG    +DLT G YDAGD++KF  PMAFT T+LSW+ LEYG +M    +L+ A+ +++W TDYL+  A      L V VG+P+ DH   +R
Sbjct:   25 YKEALSKSLLFFQGQRSGPLPRGQQISWRASSGLSDGSAAHVDLTGGYYDAGDNVKFNLPMAFTTTMLSWSALEYGKRMG--PELENARVNIRWATDYLLKCARATPGKLYVGVGDPNVDHKCWER 148          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN24_ARATH (Endoglucanase 24 OS=Arabidopsis thaliana GN=At4g39010 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 54/126 (42.86%), Postives = 86/126 (68.25%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKLVNN-KISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLI-SAHPKENVLIVXVGNPDKDHNVGKR 701
            Y++AL  ++ FF+ Q+SG L N+ +++WR +S L DG    +DLT G YDAGD++KF FPMAFT T+L+W+++E+G+ M    +L+ +  +L+W ++YL+ S     N + V VG+P  DHN  +R
Sbjct:   30 YSDALSKSILFFEGQRSGYLPNDQRMTWRRNSGLSDGWTHNIDLTGGYYDAGDNVKFNFPMAFTTTMLAWSVIEFGEFMP-SSELRNSLVALRWSSNYLLKSVSQLPNRIFVQVGDPIADHNCWER 154          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN7_ARATH (Endoglucanase 7 OS=Arabidopsis thaliana GN=KOR2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.004e-22
Identity = 53/101 (52.48%), Postives = 68/101 (67.33%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKLVN-NKISWRGDSALKDGR-DMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLI 626
            Y  AL  A+QFFD QKSGKL   NK+SWRGDS  KDG  D+   L  G YD G ++KF FPMAF+ T+LSW+++EY  +   +D+    +D LKW TDYL+
Sbjct:  117 YTLALHKALQFFDAQKSGKLPKKNKVSWRGDSGTKDGLPDVVGGLVGGYYDGGSNVKFHFPMAFSMTMLSWSLIEYSHKYKAIDEYDHMRDVLKWGTDYLL 217          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN19_ORYSJ (Endoglucanase 19 OS=Oryza sativa subsp. japonica GN=Os08g0114200 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.004e-22
Identity = 54/126 (42.86%), Postives = 82/126 (65.08%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLI-SAHPKENVLIVXVGNPDKDHNVGKR 701
            YA+AL  ++ FF+ Q+SGKL   N++ WR DS L DG    +DL  G YDAGD++KFG PMAF+ T+L+W++L++G  M    +L  A+ +++W  DYL+ +A      L V V +P++DH   +R
Sbjct:   55 YADALAKSIIFFEGQRSGKLPPGNRMPWRADSGLTDGAQYNVDLVGGYYDAGDNVKFGLPMAFSTTMLAWSVLDFGKFMGA--ELPNARAAVRWGADYLLKAATATPGALYVQVADPNQDHRCWER 178          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN23_ARATH (Endoglucanase 23 OS=Arabidopsis thaliana GN=At4g39000 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.682e-20
Identity = 52/126 (41.27%), Postives = 83/126 (65.87%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKLVNN-KISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLI-SAHPKENVLIVXVGNPDKDHNVGKR 701
            Y++AL+ ++ FF+ Q+SG+L    +++WR +SAL DG+++  DL  G YDAGD++KF FPMAFTAT+L+W+ +++G  M   D  +    ++KW TDYL+ +     N + V VG    DH+  +R
Sbjct:   26 YSDALRKSILFFEGQRSGRLPKQQRMAWRRNSALNDGKNLKTDLVGGYYDAGDNVKFHFPMAFTATMLAWSSVDFGRYMSQHD-FRHNLVAVKWATDYLLKTVSQLPNRIFVHVGEVQPDHDCWER 150          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN22_ARATH (Endoglucanase 22 OS=Arabidopsis thaliana GN=At4g38990 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.682e-20
Identity = 51/126 (40.48%), Postives = 82/126 (65.08%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKLVNN-KISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLI-SAHPKENVLIVXVGNPDKDHNVGKR 701
            Y++AL  ++ FF+ Q+SG L    +++WR +SAL DG+++ +DL  G YDAGD++KF FPMAFT T+L+W+ +++G  M   D L+    +L+W ++YL+ +     N + V VG P  DH   +R
Sbjct:   24 YSDALTKSILFFEGQRSGYLPREQRMTWRHNSALNDGKNLNVDLVGGYYDAGDNIKFHFPMAFTTTMLAWSAIDFGSYMSPAD-LRDNLVALRWGSNYLLKTVSQLPNRIFVQVGEPTPDHQCWER 148          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN9_ORYSJ (Endoglucanase 9 OS=Oryza sativa subsp. japonica GN=GLU1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 47/103 (45.63%), Postives = 68/103 (66.02%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRD---MGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLI 626
            +  AL+ A+ FF+ QKSGKL  NN + WRG+S +KDG     +G  L  G YDAGD +KF FP AF+ T+LSW+++EY  + + V +L   +D++KW  DY +
Sbjct:  112 FTVALRKALMFFNAQKSGKLPKNNNVHWRGNSCMKDGLSDPAVGRSLVGGYYDAGDAVKFNFPAAFSMTLLSWSVIEYSAKYEAVGELGHIRDTIKWGADYFL 214          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN25_ARATH (Endoglucanase 25 OS=Arabidopsis thaliana GN=KOR PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.090e-19
Identity = 47/104 (45.19%), Postives = 68/104 (65.38%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGR----DMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLI 626
            Y  AL  A++FF+ QKSGKL  +N +SWRG+S L+DG+        DL  G YDAGD +KF FPMA+  T+LSW+++EY  + +   +L   ++ +KW TDY +
Sbjct:  109 YTIALHKALKFFNAQKSGKLPKHNNVSWRGNSGLQDGKGETGSFYKDLVGGYYDAGDAIKFNFPMAYAMTMLSWSVIEYSAKYEAAGELTHVKELIKWGTDYFL 212          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN12_ORYSJ (Endoglucanase 12 OS=Oryza sativa subsp. japonica GN=GLU3 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.090e-19
Identity = 48/104 (46.15%), Postives = 69/104 (66.35%), Query Frame = 3
Query:  327 KYAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGL---DLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLI 626
            +Y +AL  A+ FF+ QKSG+L  NN I WRG+S L DG D+      L  G YDAGD++KF FP+AF+ T+LSW+++EY  +   V +    ++ +KW TDYL+
Sbjct:  110 QYTDALHKALLFFNAQKSGRLPKNNGIKWRGNSGLSDGSDLTDVKGGLVGGYYDAGDNIKFHFPLAFSMTMLSWSVIEYSAKYKAVGEYDHVRELIKWGTDYLL 213          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN21_ARATH (Endoglucanase 21 OS=Arabidopsis thaliana GN=KOR3 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.429e-19
Identity = 47/105 (44.76%), Postives = 69/105 (65.71%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKLVNN--KISWRGDSALKDGR-DMGL---DLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLI 626
            Y  AL+ A++FF+ Q+SGKL  N   +SWR DS L+DG+ D G    DL  G YDAGD +KF FPM++  T+LSW+++EY  +     +L+  ++ +KW TDY +
Sbjct:  109 YTIALRTALKFFNAQQSGKLPKNIYNVSWRHDSCLQDGKGDPGQCYKDLVGGYYDAGDSIKFNFPMSYAMTMLSWSVIEYSAKYQAAGELEHVKELIKWGTDYFL 213          
The following BLAST results are available for this feature:
BLAST of FC921258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
GUN9_ARATH2.773e-2346.83Endoglucanase 9 OS=Arabidopsis thaliana GN=CEL3 PE... [more]
GUN24_ARATH3.066e-2242.86Endoglucanase 24 OS=Arabidopsis thaliana GN=At4g39... [more]
GUN7_ARATH4.004e-2252.48Endoglucanase 7 OS=Arabidopsis thaliana GN=KOR2 PE... [more]
GUN19_ORYSJ4.004e-2242.86Endoglucanase 19 OS=Oryza sativa subsp. japonica G... [more]
GUN23_ARATH1.682e-2041.27Endoglucanase 23 OS=Arabidopsis thaliana GN=At4g39... [more]
GUN22_ARATH1.682e-2040.48Endoglucanase 22 OS=Arabidopsis thaliana GN=At4g38... [more]
GUN9_ORYSJ3.748e-2045.63Endoglucanase 9 OS=Oryza sativa subsp. japonica GN... [more]
GUN25_ARATH1.090e-1945.19Endoglucanase 25 OS=Arabidopsis thaliana GN=KOR PE... [more]
GUN12_ORYSJ1.090e-1946.15Endoglucanase 12 OS=Oryza sativa subsp. japonica G... [more]
GUN21_ARATH2.429e-1944.76Endoglucanase 21 OS=Arabidopsis thaliana GN=KOR3 P... [more]

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Properties
Property NameValue
Genbank descriptionC32102H12EF RVDevelopN Citrus clementina cDNA clone C32102H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921258 ID=FC921258; Name=FC921258; organism=Citrus clementina; type=EST; length=742bp
GAGCCAAATTAAGCTCCTTACCACTCACATTTCACCCACTAGAGAGAAAT
ACGGTGCTGCGTTTTTCACCGTTTGAAGACCCTACGCACAAAGCTCTTAC
TCTCTTCACCCAATGCCGGCATTTTGAGTTAGATTTAGATCTGAGAACTT
GACGGCATTGTGTTAAAATGGGGGAGAAATCAAAGTCCAAGGGTTGTTTC
GGATGGTTCTTGGTCCTAGTCCTATTGGCTCTAGTTGTTGGCGCAATTGT
TTACACTATTAAAAAGAAAACAAGTCACTCTGATAAACCGGCTCCGGTTC
CCGGTCCCCCCGGCGCCGTCGAGAAAAAGTATGCTGAAGCCCTCAAAGTC
GCAATGCAGTTCTTCGACGTACAAAAATCGGGAAAGTTAGTGAATAATAA
GATATCATGGAGAGGGGATTCGGCTCTTAAAGATGGAAGAGACATGGGTT
TGGATCTCACAAAAGGCATGTATGATGCTGGGGATCATATGAAGTTTGGG
TTTCCGATGGCTTTTACTGCGACTGTGTTGTCGTGGGCCATCCTTGAGTA
TGGAGATCAGATGGACGTTGTGGATCAGTTGCAACCAGCTCAGGATTCTC
TCAAGTGGATCACTGATTATCTTATCAGTGCTCATCCCAAAGAGAATGTC
CTTATTGTTCANGTGGGCAATCCTGATAAGGACCACAATGTTGGGAAAAG
ACTGAAGCATGACTGAGAGAGACACTCACTCAGTCACACATC
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