FC921258

Overview
NameFC921258
Unique NameFC921258
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN10_ORYSJ (Endoglucanase 10 OS=Oryza sativa subsp. japonica GN=GLU2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.231e-19
Identity = 44/104 (42.31%), Postives = 70/104 (67.31%), Query Frame = 3 
Query:  327 KYAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRD---MGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLI 626
            +Y +AL  A+ FF+ Q+SG L  +N +SWRG+S +KDG     +   L  G YDAGD +KF +PMA++ T+LSW+++EY  + + + +L   ++ +KW TDYL+
Sbjct:  109 QYTQALHKALMFFNAQRSGPLPKHNGVSWRGNSCMKDGLSDSTVRKSLVGGFYDAGDAIKFNYPMAWSMTMLSWSVIEYKAKYEAIGELDHVKELIKWGTDYLL 212
[Close]
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN6_DICDI (Endoglucanase OS=Dictyostelium discoideum GN=celA PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.741e-17
Identity = 47/127 (37.01%), Postives = 75/127 (59.06%), Query Frame = 3 
Query:  330 YAEALKVAMQFFDVQKSGKLVNNKISWRGDSALKDG-----RDMGLD--LTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVXVGNPDKDHN 689
            Y   L+ A+ F+ + ++G+L +N I WRG+SAL D      +D   D  L+ G +DAGD +KFG PMA++ T+L W+ +EY   +          D++K+ TD+LI+AH  +N     VG+ + DH+
Sbjct:   27 YCSLLENALMFYKMNRAGRLPDNDIPWRGNSALNDASPNSAKDANGDGNLSGGYFDAGDGVKFGLPMAYSMTMLGWSFIEYESNIAQCGLTSLYLDTIKYGTDWLIAAHTADNEFAGQVGDGNVDHS 153
The following BLAST results are available for this feature:
BLAST of FC921258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
GUN10_ORYSJ9.231e-1942.31Endoglucanase 10 OS=Oryza sativa subsp. japonica G... [more]
GUN6_DICDI1.741e-1737.01Endoglucanase OS=Dictyostelium discoideum GN=celA ... [more]

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Properties
Property NameValue
Genbank descriptionC32102H12EF RVDevelopN Citrus clementina cDNA clone C32102H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921258 ID=FC921258; Name=FC921258; organism=Citrus clementina; type=EST; length=742bp
GAGCCAAATTAAGCTCCTTACCACTCACATTTCACCCACTAGAGAGAAAT
ACGGTGCTGCGTTTTTCACCGTTTGAAGACCCTACGCACAAAGCTCTTAC
TCTCTTCACCCAATGCCGGCATTTTGAGTTAGATTTAGATCTGAGAACTT
GACGGCATTGTGTTAAAATGGGGGAGAAATCAAAGTCCAAGGGTTGTTTC
GGATGGTTCTTGGTCCTAGTCCTATTGGCTCTAGTTGTTGGCGCAATTGT
TTACACTATTAAAAAGAAAACAAGTCACTCTGATAAACCGGCTCCGGTTC
CCGGTCCCCCCGGCGCCGTCGAGAAAAAGTATGCTGAAGCCCTCAAAGTC
GCAATGCAGTTCTTCGACGTACAAAAATCGGGAAAGTTAGTGAATAATAA
GATATCATGGAGAGGGGATTCGGCTCTTAAAGATGGAAGAGACATGGGTT
TGGATCTCACAAAAGGCATGTATGATGCTGGGGATCATATGAAGTTTGGG
TTTCCGATGGCTTTTACTGCGACTGTGTTGTCGTGGGCCATCCTTGAGTA
TGGAGATCAGATGGACGTTGTGGATCAGTTGCAACCAGCTCAGGATTCTC
TCAAGTGGATCACTGATTATCTTATCAGTGCTCATCCCAAAGAGAATGTC
CTTATTGTTCANGTGGGCAATCCTGATAAGGACCACAATGTTGGGAAAAG
ACTGAAGCATGACTGAGAGAGACACTCACTCAGTCACACATC
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