FC921260

Overview
NameFC921260
Unique NameFC921260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921260_ssr94 microsatellite FC921260_ssr94:94..103. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14279 contig Ccv1_Contig14279:1..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921260 vs. ExPASy Swiss-Prot
Match: ACP1_SPIOL (Acyl carrier protein 1, chloroplastic OS=Spinacia oleracea GN=ACL1.1 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.666e-21
Identity = 63/136 (46.32%), Postives = 77/136 (56.62%), Query Frame = 2
Query:  140 SVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETKS 547
            S T T     S S   K +QG               SFP+LR  ++ R     AAK ET+DKVC IVK++LAL AD  VT +S+F+ LGADSLDTVEIVM L            AQ IST+Q AAD+IE L+E K+
Sbjct:    5 SATTTVRVQPSSSSLHKLSQGNGRCSSIVCLDWGKSSFPTLR--TSRRRSFISAAKKETIDKVCDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAADVIESLLEKKA 138          
BLAST of FC921260 vs. ExPASy Swiss-Prot
Match: ACP2_ARATH (Acyl carrier protein 2, chloroplastic OS=Arabidopsis thaliana GN=ACL1.2 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.708e-20
Identity = 56/102 (54.90%), Postives = 69/102 (67.65%), Query Frame = 2
Query:  245 KSFPSLRMRSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETKS 547
            +S  S  +R  P R  VSCAAKPETVDKVC +V+KQL+L     +T  +KFAALGADSLDTVEIVMGL            AQ+I+TV+ AA LIE+L+  K+
Sbjct:   34 RSSLSFNLRQLPTRLTVSCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGLEEEFGIEMAEEKAQSIATVEQAAALIEELLFEKA 135          
BLAST of FC921260 vs. ExPASy Swiss-Prot
Match: ACP1_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.A1 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.708e-20
Identity = 55/93 (59.14%), Postives = 67/93 (72.04%), Query Frame = 2
Query:  269 RSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 544
            RS P R  VSCAAKPETV+KV +IVKKQL+L  D  V  E+KFA LGADSLDTVEIVMGL            AQ I+TV++AA+LI++L++ K
Sbjct:   41 RSIPTRLSVSCAAKPETVEKVSKIVKKQLSLKDDQNVVAETKFADLGADSLDTVEIVMGLEEEFHIEMAEEKAQKITTVEEAAELIDELVQAK 133          
BLAST of FC921260 vs. ExPASy Swiss-Prot
Match: ACP3_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.A3 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.969e-20
Identity = 54/96 (56.25%), Postives = 66/96 (68.75%), Query Frame = 2
Query:  257 SLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 544
            +LR     R  VSCAAKPET++KV +IVKKQL+L  D  V  E+KFA LGADSLDTVEIVMGL            AQ I+TV++AA+LIE+L+  K
Sbjct:   38 NLRRSIPTRLSVSCAAKPETIEKVSKIVKKQLSLKDDQKVVAETKFADLGADSLDTVEIVMGLEEEFDIEMAEEKAQKIATVEEAAELIEELVLLK 133          
BLAST of FC921260 vs. ExPASy Swiss-Prot
Match: ACP3_ARATH (Acyl carrier protein 3, chloroplastic OS=Arabidopsis thaliana GN=ACL1.3 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.107e-19
Identity = 54/98 (55.10%), Postives = 66/98 (67.35%), Query Frame = 2
Query:  257 SLRMRSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETKS 547
            S  +R  P R  V CAAKPETVDKVC +V+KQL+L     +T  +KFAALGADSLDTVEIVMGL            AQ+I+TV+ AA LIE+L+  K+
Sbjct:   38 SFNLRQLPTRLTVYCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGLEEEFGIEMAEEKAQSIATVEQAAALIEELLLEKA 135          
BLAST of FC921260 vs. ExPASy Swiss-Prot
Match: ACP1_ARATH (Acyl carrier protein 1, chloroplastic OS=Arabidopsis thaliana GN=ACP-1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.107e-19
Identity = 61/136 (44.85%), Postives = 78/136 (57.35%), Query Frame = 2
Query:  137 ASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 544
            ASV+  ++C+ +   SF++                 +S PS R+       VSCAAK ET++KV  IVKKQL+L  D  V  E+KFA LGADSLDTVEIVMGL            AQ I+TV+ AA+LIE+LI  K
Sbjct:    7 ASVSLQTSCLATTRISFQKPALISNHGKTNLSFNLRRSIPSRRLS------VSCAAKQETIEKVSAIVKKQLSLTPDKKVVAETKFADLGADSLDTVEIVMGLEEEFNIQMAEEKAQKIATVEQAAELIEELINEK 136          
BLAST of FC921260 vs. ExPASy Swiss-Prot
Match: ACP2_SPIOL (Acyl carrier protein 2, chloroplastic OS=Spinacia oleracea GN=ACL1.2 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.888e-19
Identity = 63/138 (45.65%), Postives = 78/138 (56.52%), Query Frame = 2
Query:  134 MASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRSAPR-FRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 544
            MAS+TG+S    S  C+  Q+                +  P +     PR   VSCAAKPE V KV  IVK QLAL  D  VTGE+KF+ +GADSLDTVEIVM L           +AQTI+T+Q+AAD+IE L + K
Sbjct:    1 MASITGSSV---SFKCAPLQSSFNSKNYALKSSVTFWRRTPVM-----PRGLSVSCAAKPEMVTKVSDIVKSQLALAEDAKVTGETKFSEIGADSLDTVEIVMKLEEEFGVTVEEENAQTITTIQEAADMIEALQQNK 130          
BLAST of FC921260 vs. ExPASy Swiss-Prot
Match: ACP5_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.C1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.371e-19
Identity = 51/91 (56.04%), Postives = 62/91 (68.13%), Query Frame = 2
Query:  272 SAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 544
            S  R  +SCAAK ETV+KV +IVKKQL+L  D  V  E+KF  LGADSLDTVEIVMGL            AQ I+TV+ AA+LIE+L++ K
Sbjct:   43 SRTRLSISCAAKQETVEKVSEIVKKQLSLKDDQQVVAETKFVDLGADSLDTVEIVMGLEEEFGIQMAEEKAQKIATVEQAAELIEELMQAK 133          
The following BLAST results are available for this feature:
BLAST of FC921260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ACP1_SPIOL7.666e-2146.32Acyl carrier protein 1, chloroplastic OS=Spinacia ... [more]
ACP2_ARATH1.708e-2054.90Acyl carrier protein 2, chloroplastic OS=Arabidops... [more]
ACP1_BRANA1.708e-2059.14Acyl carrier protein, chloroplastic OS=Brassica na... [more]
ACP3_BRANA4.969e-2056.25Acyl carrier protein, chloroplastic OS=Brassica na... [more]
ACP3_ARATH1.107e-1955.10Acyl carrier protein 3, chloroplastic OS=Arabidops... [more]
ACP1_ARATH1.107e-1944.85Acyl carrier protein 1, chloroplastic OS=Arabidops... [more]
ACP2_SPIOL1.888e-1945.65Acyl carrier protein 2, chloroplastic OS=Spinacia ... [more]
ACP5_BRANA9.371e-1956.04Acyl carrier protein, chloroplastic OS=Brassica na... [more]

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Properties
Property NameValue
Genbank descriptionC32103A02EF RVDevelopN Citrus clementina cDNA clone C32103A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921260 ID=FC921260; Name=FC921260; organism=Citrus clementina; type=EST; length=745bp
TTCCCAGGGATTGCTCTCCTCTCAGTCTCAGACACACATTACATAGCACG
CAGTCTTCGTGCTCTTCGTCGTCCTCTCTCTCGCTCTCTCTCGCTCTCTC
TCTTTTGAACTTCAAATCTCAGATCTCTATTCAATGGCTTCAGTTACAGG
AACTTCAGCCTGCATGACCTCTCTGTCTTGCTCTTTCAAGCAGACCCAGG
GTAGGATCTCTAGTGTGAATTCAGTTTCACTTTCCATCAATGGGAAAAGC
TTCCCATCCCTTAGAATGCGATCAGCACCCCGCTTCCGGGTTTCCTGTGC
AGCCAAGCCAGAGACTGTGGATAAGGTTTGTCAAATTGTGAAGAAGCAGT
TGGCACTCCCAGCAGATACTACCGTTACCGGAGAGTCAAAATTCGCTGCC
CTTGGAGCTGATTCTCTTGATACGGTTGAGATTGTGATGGGACTGGAGGA
GGAATTTGGGATCAGCGTTGAAGAAGAAAGTGCCCAGACCATCTCAACCG
TTCAAGATGCTGCAGATCTGATTGAGAAGCTTATTGAGACCAAGAGTGCT
TAACTAANATGGTCTGGAGAGAGCCGGGGCTTAGGGACTTAGTTCGTCTA
GTTTCGATTTCGATCTTTTTGTTGGCTTGTCTCTCAAGGAGTTTCTAGCT
TGTATTGTGAACTTGTCAGTGGTTTTTCTATTCTGTTGTTCCTTCTATTA
GAGAGAACTCATTAATCAGTTTGCTTGGATTATCATAAACATGTT
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