FC921264

Overview
NameFC921264
Unique NameFC921264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15130 contig Ccv1_Contig15130:23..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921264 vs. ExPASy Swiss-Prot
Match: RS10_BOVIN (40S ribosomal protein S10 OS=Bos taurus GN=RPS10 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.249e-29
Identity = 60/97 (61.86%), Postives = 78/97 (80.41%), Query Frame = 3
Query:   69 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 350
            M++P+KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97          
BLAST of FC921264 vs. ExPASy Swiss-Prot
Match: RS10B_DROME (40S ribosomal protein S10b OS=Drosophila melanogaster GN=RpS10b PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.597e-28
Identity = 59/97 (60.82%), Postives = 76/97 (78.35%), Query Frame = 3
Query:   69 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAK 356
            M +P+ +R  I +YLF+EGV  AKKD++  KHPE++ +PNL VIK MQS  SR  V+E FAW HYYWYLTN+GIE LR+YL+LP EIVP+TLK+ A+
Sbjct:    1 MFMPKAHRVAIYEYLFKEGVIVAKKDFHAQKHPELESIPNLHVIKAMQSLHSRGLVKEQFAWRHYYWYLTNEGIEELRSYLHLPPEIVPSTLKRPAR 97          
BLAST of FC921264 vs. ExPASy Swiss-Prot
Match: RS10_XENLA (40S ribosomal protein S10 OS=Xenopus laevis GN=rps10 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.698e-28
Identity = 58/97 (59.79%), Postives = 78/97 (80.41%), Query Frame = 3
Query:   69 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 350
            M++P+K+R  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KSR YV+E FAW H+YWYLTN+GI++LR +L+LP EIVPATL++S
Sbjct:    1 MLMPKKDRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRS 97          
BLAST of FC921264 vs. ExPASy Swiss-Prot
Match: RS10B_SCHPO (40S ribosomal protein S10-B OS=Schizosaccharomyces pombe GN=rps10b PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.785e-27
Identity = 56/98 (57.14%), Postives = 76/98 (77.55%), Query Frame = 3
Query:   69 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPA 362
            M+IP++NRK I + LFQ+GV  AKKD+NL KHPE+ VPNLQVIK  QS  SR Y++  + W  +Y+ LTN+G+E+LR YL+LP+E+VPAT K+  +PA
Sbjct:    1 MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVGVPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPA 98          
BLAST of FC921264 vs. ExPASy Swiss-Prot
Match: RS10_DICDI (40S ribosomal protein S10 OS=Dictyostelium discoideum GN=rps10 PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 5.195e-27
Identity = 54/95 (56.84%), Postives = 76/95 (80.00%), Query Frame = 3
Query:   72 IIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSA 353
            +IP +N+  I +YLFQEGV  A KD++LAKHP+I+ V NL V+++++SFKSR++V ETF W +YYW LT +GI++LRTYL +P  +VPAT+KK A
Sbjct:    3 LIPTENKLAIYRYLFQEGVLVAPKDFHLAKHPQIETVSNLDVLQILRSFKSRKFVTETFNWQYYYWVLTEEGIKYLRTYLQVPESVVPATMKKQA 97          
BLAST of FC921264 vs. ExPASy Swiss-Prot
Match: RS10A_DROME (40S ribosomal protein S10a OS=Drosophila melanogaster GN=RpS10a PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.157e-26
Identity = 58/97 (59.79%), Postives = 74/97 (76.29%), Query Frame = 3
Query:   69 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAK 356
            M IP+ NR  I +YLF+EGV  AKKD  + KH E+D +PNLQVIK+MQS  SR +V+E FAW H+YW LTN+GIE LR YL+LP EIVP+TL ++ +
Sbjct:    1 MFIPKANRVAIYEYLFKEGVLVAKKDSPIQKHSELDKIPNLQVIKVMQSLNSRGWVKEQFAWRHFYWLLTNEGIEELRRYLHLPPEIVPSTLTQTTR 97          
BLAST of FC921264 vs. ExPASy Swiss-Prot
Match: RS10A_SCHPO (40S ribosomal protein S10-A OS=Schizosaccharomyces pombe GN=rps10a PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.974e-26
Identity = 54/97 (55.67%), Postives = 74/97 (76.29%), Query Frame = 3
Query:   69 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 359
            M+IP++NRK I + LF +GV  AKKD+NL KHPE+ VPNLQVIK  QS  SR Y++  + W  +Y+ LTN+G+E+LR YL+LP+E+VPAT K+  +P
Sbjct:    1 MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVGVPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRP 97          
BLAST of FC921264 vs. ExPASy Swiss-Prot
Match: RS10L_HUMAN (Putative 40S ribosomal protein S10-like protein OS=Homo sapiens GN=RPS10P5 PE=5 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.578e-26
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 3
Query:   69 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATL 341
            M++P+KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KSR  V+E FAW H+YWYLTN+G ++LR YL+LP EIVPATL
Sbjct:    1 MLMPKKNRIAIHELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGCVKEQFAWRHFYWYLTNEGSQYLRDYLHLPPEIVPATL 94          
BLAST of FC921264 vs. ExPASy Swiss-Prot
Match: RS10B_YEAST (40S ribosomal protein S10-B OS=Saccharomyces cerevisiae GN=RPS10B PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.350e-25
Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   69 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPA 362
            M++P++ R +I +YLFQEGV  AKKD+N AKH EID  NL VIK +QS  S+ YV+  F+W +YY+ LT +G+E+LR YLNLP  IVP T  +   P+
Sbjct:    1 MLMPKQERNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQERNPS 98          
BLAST of FC921264 vs. ExPASy Swiss-Prot
Match: RS10A_YEAST (40S ribosomal protein S10-A OS=Saccharomyces cerevisiae GN=RPS10A PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.350e-25
Identity = 52/97 (53.61%), Postives = 70/97 (72.16%), Query Frame = 3
Query:   69 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 359
            M++P+++R +I +YLFQEGV  AKKD+N AKH EID  NL VIK +QS  S+ YV+  F+W +YY+ LT +G+E+LR YLNLP  IVP T  +   P
Sbjct:    1 MLMPKEDRNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQERNP 97          
The following BLAST results are available for this feature:
BLAST of FC921264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS10_BOVIN4.249e-2961.8640S ribosomal protein S10 OS=Bos taurus GN=RPS10 P... [more]
RS10B_DROME3.597e-2860.8240S ribosomal protein S10b OS=Drosophila melanogas... [more]
RS10_XENLA4.698e-2859.7940S ribosomal protein S10 OS=Xenopus laevis GN=rps... [more]
RS10B_SCHPO1.785e-2757.1440S ribosomal protein S10-B OS=Schizosaccharomyces... [more]
RS10_DICDI5.195e-2756.8440S ribosomal protein S10 OS=Dictyostelium discoid... [more]
RS10A_DROME1.157e-2659.7940S ribosomal protein S10a OS=Drosophila melanogas... [more]
RS10A_SCHPO1.974e-2655.6740S ribosomal protein S10-A OS=Schizosaccharomyces... [more]
RS10L_HUMAN2.578e-2660.64Putative 40S ribosomal protein S10-like protein OS... [more]
RS10B_YEAST6.350e-2553.0640S ribosomal protein S10-B OS=Saccharomyces cerev... [more]
RS10A_YEAST6.350e-2553.6140S ribosomal protein S10-A OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionC32103A06EF RVDevelopN Citrus clementina cDNA clone C32103A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921264 ID=FC921264; Name=FC921264; organism=Citrus clementina; type=EST; length=727bp
GGAGACGAGCCATTCGTTCCTCGCGCAGCTTGACAGAAAGGGCTAAGCTC
AATCAACACTTCGCAACCATGATTATTCCAGAGAAGAACCGCAAAGAAAT
CTGCAAGTACCTCTTCCAAGAGGGAGTATGCTATGCAAAGAAGGATTATA
ATCTTGCGAAGCACCCAGAAATCGATGTTCCAAACCTGCAGGTGATTAAG
CTGATGCAGAGCTTCAAATCTAGGGAGTATGTTCGTGAGACATTTGCGTG
GATGCACTATTATTGGTACCTTACGAATGATGGGATTGAGTTTTTGAGGA
CTTACCTCAATCTTCCATCAGAAATTGTTCCTGCTACCTTGAAGAAATCC
GCTAAGCCAGCTGGTCGCCCGATGGGTGGACCTGGTGGTGATCGTCCAAG
GGGCCCACCTCGTTTTGATGGAGACCGACCGAGGTTTGGTGACCGTGAAG
GGTACCGTGGTGGTCCTCGTGGTGGTGACTTTGGTGGTGAGAAAGGTGGA
GCCCCTGCTGATTTCCAGCCATCCTTCAGGGGTTCTGGTGGAAGACCTGG
TTTTGGTCGCGGAGGTGGAGGCTATGGTGCAGCTCCATCAGGTTCAGGAT
TTCCTTGAAGTTAAGGCCGGTTTGCTTAGTTCATGTTTGCCCCAAATTAG
TGTTTCAGTCTTTAGAACAGTCTATGCCTTTGTTGAATTTCTAAGTATTC
TGTAGCTTAAGTACATATTAGTCATAT
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