FC921266

Overview
NameFC921266
Unique NameFC921266
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921266 vs. ExPASy Swiss-Prot
Match: LMCPA_LEIME (Cysteine proteinase A OS=Leishmania mexicana GN=LMCPA PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 48/142 (33.80%), Postives = 67/142 (47.18%), Query Frame = 2
Query:  233 FESWMLKHGKSHESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFXXXXXXXXXXXXXXXXXNHFLYKNVEDLP----QSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 646
            + S+  +HGK+     E+ HR   FK N++     N   Q   +++    +F+D++ +EF   YL    PD                     NH    +V+D       SVDWR KGAVT VKNQ  CG CWAFSA+  +EG
Sbjct:   42 YGSFKKRHGKAFGGDAEEGHRFNAFKQNMQTAYFLNT--QNPHAHYDVSGKFADLTPQEFAKLYLN---PD--------------YYARHLKNHKEDVHVDDSAPSGVMSVDWRDKGAVTPVKNQGLCGSCWAFSAIGNIEG 164          
BLAST of FC921266 vs. ExPASy Swiss-Prot
Match: CATV_NPVCF (Viral cathepsin OS=Choristoneura fumiferana nuclear polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 47/142 (33.10%), Postives = 68/142 (47.89%), Query Frame = 2
Query:  218 KLVELFESWMLKHGKSHESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFXXXXXXXXXXXXXXXXXNHFLYKNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVE 643
            K    FE ++ K  KS+ S  EKL R +IF+ NL+ I  +N     T+ Y   +N+F+D+S +E  +KY TGL                           L +  +  P   DWR+   VT VKNQ  CG CWAF+ + ++E
Sbjct:   23 KAPNYFEDFLHKFNKSYSSESEKLRRFQIFRHNLEEIINKNHN-DSTAQY--EINKFADLSKDETISKY-TGLS-------------LPLQTQNFCEVVVLDRPPDKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLE 147          
BLAST of FC921266 vs. ExPASy Swiss-Prot
Match: CATV_NPVAP (Viral cathepsin OS=Antheraea pernyi nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 49/155 (31.61%), Postives = 72/155 (46.45%), Query Frame = 2
Query:  179 IVGYSLEVLTSTDKLVELFESWMLKHGKSHESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFXXXXXXXXXXXXXXXXXNHFLYKNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVE 643
            + G +L       K    FE ++ K  K++ S  EKL R +IF+ NL+ I  +N   Q  +S    +N+FSD+S +E  +KY TGL                           L +  +  P   DWR+   VT VKNQ  CG CWAF+ + ++E
Sbjct:   10 VYGATLGAAYDLLKAPSYFEEFLHKFNKNYSSESEKLRRFKIFQHNLEEIINKN---QNDTSAQYEINKFSDLSKDETISKY-TGLS-------------LPLQKQNFCEVVVLDRPPDKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLE 147          
BLAST of FC921266 vs. ExPASy Swiss-Prot
Match: MDO1_PSEMR (Macrodontain-1 OS=Pseudananas macrodontes PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 2
Query:  539 LPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTG 667
            +PQS+DWR  GAV  VKNQ PCGGCWAF+A+A VEGI +I  G
Sbjct:    2 VPQSIDWRDYGAVNEVKNQGPCGGCWAFAAIATVEGIYKIRKG 44          
BLAST of FC921266 vs. ExPASy Swiss-Prot
Match: CYSP_PLAFA (Trophozoite cysteine proteinase OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 46/161 (28.57%), Postives = 75/161 (46.58%), Query Frame = 2
Query:  188 YSLEVLTSTDKLVELFESWMLKHGKSHESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFXXXXXXXXXXXXXXXXXNHFLY---KNVEDL----PQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGI 649
            Y  E   +  K    F  +M +H K +++ +E++ + EIFK N   I   N+ L   + Y   +N+FSD S EE K  + T L   +                    + F     +N +D+    P+ +D+R+KG V   K+Q  CG CWAF++V  +E +
Sbjct:  210 YKKEDPINNIKYASKFFKFMKEHNKVYKNIDEQMRKFEIFKINYISIKNHNK-LNKNAMYKKKVNQFSDYSEEELKEYFKTLLHVPNHMIEKYSKPFENHLKDNILISEFYTNGKRNEKDIFSKVPEILDYREKGIVHEPKDQGLCGSCWAFASVGNIESV 369          
BLAST of FC921266 vs. ExPASy Swiss-Prot
Match: BROM2_ANACO (Stem bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 2
Query:  539 LPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTG 667
            +PQS+DWR  GAVT VKNQNPCG CWAF+A+A VE I +I  G
Sbjct:    2 VPQSIDWRDYGAVTSVKNQNPCGACWAFAAIATVESIYKIKKG 44          
BLAST of FC921266 vs. ExPASy Swiss-Prot
Match: CYSP1_LEIPI (Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 47/142 (33.10%), Postives = 67/142 (47.18%), Query Frame = 2
Query:  233 FESWMLKHGKSHESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFXXXXXXXXXXXXXXXXXNHFLYKNVEDLP----QSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 646
            + S+  +HGK+     E+ HR   FK N++   A     Q   +++    +F+D++ +EF   Y   L PD                     +H    +V+D       SVDWR KGAVT VKNQ  CG CWAFSA+  +EG
Sbjct:   42 YGSFKKRHGKAFGGDAEEGHRFNAFKQNMQ--TAYFLNTQNPHAHYDVSGKFADLTPQEFAKLY---LNPD--------------YYARHLKDHKEDVHVDDSAPSGVMSVDWRDKGAVTPVKNQGLCGSCWAFSAIGNIEG 164          
BLAST of FC921266 vs. ExPASy Swiss-Prot
Match: CATV_NPVEP (Viral cathepsin OS=Epiphyas postvittana nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 49/147 (33.33%), Postives = 70/147 (47.62%), Query Frame = 2
Query:  218 KLVELFESWMLKHGKSHESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFXXXXXXXXXXXXXXXXXNHFLYKNVEDLPQS-----VDWRKKGAVTHVKNQNPCGGCWAFSAVAAVE 643
            K    FE ++ ++ K ++S  EKL R +IF+ NL  I  +NR    T+ Y   +N+FSD+S +E   KY TGL                         +F    V D P        DWR+   +T VKNQ  CG CWAF+ +A++E
Sbjct:   23 KAPNYFEEFVRQYNKQYDSEYEKLRRYKIFQHNLNDIITKNRN--DTAVY--KINKFSDLSKDETIAKY-TGLS------------------LPLHTQNFCEVVVLDRPPGKGPLEFDWRRFNKITSVKNQGMCGACWAFATLASLE 146          
The following BLAST results are available for this feature:
BLAST of FC921266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
LMCPA_LEIME1.617e-1133.80Cysteine proteinase A OS=Leishmania mexicana GN=LM... [more]
CATV_NPVCF1.617e-1133.10Viral cathepsin OS=Choristoneura fumiferana nuclea... [more]
CATV_NPVAP1.617e-1131.61Viral cathepsin OS=Antheraea pernyi nuclear polyhe... [more]
MDO1_PSEMR2.758e-1167.44Macrodontain-1 OS=Pseudananas macrodontes PE=1 SV=... [more]
CYSP_PLAFA2.758e-1128.57Trophozoite cysteine proteinase OS=Plasmodium falc... [more]
BROM2_ANACO3.602e-1167.44Stem bromelain OS=Ananas comosus PE=1 SV=1[more]
CYSP1_LEIPI6.144e-1133.10Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS... [more]
CATV_NPVEP6.144e-1133.33Viral cathepsin OS=Epiphyas postvittana nucleopoly... [more]

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Properties
Property NameValue
Genbank descriptionC32103A08EF RVDevelopN Citrus clementina cDNA clone C32103A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921266 ID=FC921266; Name=FC921266; organism=Citrus clementina; type=EST; length=683bp
GAAGTAATTAACTTGAAGATAAAGGGTGGGGGAGAGAGAGAGAGAGAGAG
AGATGAAAATGTTATCTTCCAATTGTAAGTTGTTGCTTCGTCTTTCTTTG
TGCGTGTCTCTCTTGATGATCATATGCATACGCTGCTCTAGCAGTAGAAC
TCTTCAAGGTCATGATGGTGAGTTCTCCATTGTGGGGTATTCACTAGAGG
TGTTGACATCCACGGACAAGCTGGTTGAGCTATTCGAGTCATGGATGTTG
AAACATGGGAAATCGCATGAAAGCACGGAAGAGAAGTTGCATAGATTGGA
GATATTCAAAGACAACTTGAAGCACATTGATGCGAGGAACAGAGAGCTGC
AAATTACTAGTAGCTATTGGCTTGGTCTGAATGAGTTTTCAGATATGAGC
CACGAAGAGTTCAAGAACAAGTACTTAACAGGACTCAAACCCGATGATGA
TGAGTTCCGCAGAAGGAGTCACCGCGACTCCAGTAGTAGATCTTCTGCTA
GCAGTAGTAATCATTTTTTGTACAAAAATGTAGAGGATTTGCCTCAATCC
GTTGACTGGAGGAAGAAAGGAGCTGTCACTCATGTCAAAAACCAAAATCC
TTGTGGTGGATGTTGGGCATTTTCAGCAGTAGCAGCAGTGGAGGGGATAA
ATCAGATAGTGACGGGAAAATCTACGGCGTTGT
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