FC921277

Overview
NameFC921277
Unique NameFC921277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL7_ORYSJ (Squamosa promoter-binding-like protein 7 OS=Oryza sativa subsp. japonica GN=SPL7 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 2
Query:  560 IPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694
            +P C V+GC   L   ++YHRRHKVCE+H+K P+V +HG EQRFC
Sbjct:  105 VPRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFC 149          
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL7_ORYSI (Squamosa promoter-binding-like protein 7 OS=Oryza sativa subsp. indica GN=SPL7 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 2
Query:  560 IPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694
            +P C V+GC   L   ++YHRRHKVCE+H+K P+V +HG EQRFC
Sbjct:  105 VPRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFC 149          
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL9_ARATH (Squamosa promoter-binding-like protein 9 OS=Arabidopsis thaliana GN=SPL9 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 2
Query:  527 KRARVPGNGT--QIPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694
            +R R  G+G   QIP C V+GC  DL   + Y+ RH+VC +HSKTP+VT+ G EQRFC
Sbjct:   58 RRVRGGGSGQSGQIPRCQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVTVAGIEQRFC 115          
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL6_ARATH (Squamosa promoter-binding-like protein 6 OS=Arabidopsis thaliana GN=SPL6 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 2
Query:  527 KRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694
            K++R     +Q P C V GC+ DL   +DYH+RH+VCE HSKT  V ++G EQRFC
Sbjct:  110 KKSRASNLCSQNPLCQVYGCSKDLSSSKDYHKRHRVCEAHSKTSVVIVNGLEQRFC 165          
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL3_ORYSJ (Squamosa promoter-binding-like protein 3 OS=Oryza sativa subsp. japonica GN=SPL3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 2
Query:  527 KRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694
            K+ +V    TQ P C V+GC  DL   + YHR+H+VCE HSKT +V + G E+RFC
Sbjct:  168 KKVKVAQQNTQNPHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFC 223          
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL3_ORYSI (Squamosa promoter-binding-like protein 3 OS=Oryza sativa subsp. indica GN=SPL3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 2
Query:  527 KRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694
            K+ +V    TQ P C V+GC  DL   + YHR+H+VCE HSKT +V + G E+RFC
Sbjct:  168 KKVKVAQQNTQNPHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFC 223          
The following BLAST results are available for this feature:
BLAST of FC921277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SPL7_ORYSJ3.728e-1157.78Squamosa promoter-binding-like protein 7 OS=Oryza ... [more]
SPL7_ORYSI3.728e-1157.78Squamosa promoter-binding-like protein 7 OS=Oryza ... [more]
SPL9_ARATH8.306e-1153.45Squamosa promoter-binding-like protein 9 OS=Arabid... [more]
SPL6_ARATH8.306e-1151.79Squamosa promoter-binding-like protein 6 OS=Arabid... [more]
SPL3_ORYSJ8.306e-1150.00Squamosa promoter-binding-like protein 3 OS=Oryza ... [more]
SPL3_ORYSI8.306e-1150.00Squamosa promoter-binding-like protein 3 OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionC32103B07EF RVDevelopN Citrus clementina cDNA clone C32103B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921277 ID=FC921277; Name=FC921277; organism=Citrus clementina; type=EST; length=696bp
GGAGAGAAGACTCGCAATGACTATTTTCTTTACCATTCATGGTTACCTAA
TTACCTTCTAGCTTTTACGTGCGTTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCAGACAGCGTTTGTATCTGAATACATTATCCAAAAATCTCTTGCAGT
CTTTGCTTCTTGTTCTGCTACTGAGGAAGCACTAGCTGCAGCAAGTAGTT
TAGAGCTAGCAAAAGCTTTTTGATTGGACTTTTTTCTTGCTATTGGGAAT
AGAGGATTCTCTTGTGAATTGCCTCTTATGTGGTTGATTTGTGGGATTCT
CAGGAGTTGAGCGTGAGGAGATAAAAAAGAAGTACAGGAAAATGTTCCAT
AGGACAATCTCTTGGAAGATGCTGTTCTCCTAATTGCTTTAGTTGCTGGG
TCCAGTAGCGATTGCTTTGTGGACTTAAAGCTCGGAATAGTTAGGTTGAC
TTGGAGGACAAGTTAGAAAATAGAACTTGAGTATTCTGAGGAGTCTTTGA
TGGAATCATCACCATCTGGTTCTTCAAAGAGAGCCAGAGTGCCTGGCAAT
GGCACCCAAATTCCTTCTTGCTTGGTTGATGGATGCACAGCTGACCTTGG
TAAATGCCGAGACTATCATAGACGCCATAAAGTTTGTGAGCTTCATTCTA
AGACCCCCCAAGTAACTATTCACGGTCGGGAACAGCGATTTTGCCA
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