FC921285

Overview
NameFC921285
Unique NameFC921285
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921285 vs. ExPASy Swiss-Prot
Match: KCAB1_MUSPU (Voltage-gated potassium channel subunit beta-1 OS=Mustela putorius GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.971e-63
Identity = 108/211 (51.18%), Postives = 154/211 (72.99%), Query Frame = 2
Query:   83 MQYRHLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNVLSRHKGEAEYLPLYSNYGIXLTTWSPLA 715
            M YR+LG+SGLRVS L  G WV+FG Q+  + A+ L+    + GVN FD AEVYA G+AE I+G  I++ GW+RS +V++TK++WGG+   ++GLSRKHI+EG K SL+RL ++YVDV++ +RPD++TP+EE VRAM +VI++G A YWGTS WSA +I EA+ +A + +++ P+ EQ EY++  R K E +   LY   G+   TWSPLA
Sbjct:   78 MAYRNLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLA 288          
BLAST of FC921285 vs. ExPASy Swiss-Prot
Match: KCAB3_XENLA (Voltage-gated potassium channel subunit beta-3 OS=Xenopus laevis GN=kcnab3 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.736e-63
Identity = 108/211 (51.18%), Postives = 154/211 (72.99%), Query Frame = 2
Query:   83 MQYRHLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNVLSRHKGEAEYLPLYSNYGIXLTTWSPLA 715
            M+YR+LG+SGLRVS L  G WV+FG+Q+  + A++L+    +HGVN FD AEVYA GRAE  +G+ +++  W+RS  VV+TKI+WGGQ   ++GLSRKHI+EG + SL+RL +DYVD+++ +R D ++P+EE VRAM +VI++G A YWGTS WSA +I EA+ +A + +L+ P+ EQ EY++  R K E +   LY   G+   TWSPLA
Sbjct:   71 MKYRNLGKSGLRVSCLGLGTWVTFGSQISDEVAENLMTVAYEHGVNLFDTAEVYAAGRAERTLGKILKKKEWRRSSYVVTTKIYWGGQAETERGLSRKHIIEGLRGSLERLQLDYVDIVFANRMDPNSPMEEIVRAMTFVINQGMAMYWGTSRWSAMEIMEAYSVARQFNLIPPVCEQAEYHLFQREKVETQLPELYHKIGVGSMTWSPLA 281          
BLAST of FC921285 vs. ExPASy Swiss-Prot
Match: KCAB1_RABIT (Voltage-gated potassium channel subunit beta-1 OS=Oryctolagus cuniculus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.491e-63
Identity = 107/211 (50.71%), Postives = 154/211 (72.99%), Query Frame = 2
Query:   83 MQYRHLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNVLSRHKGEAEYLPLYSNYGIXLTTWSPLA 715
            M +R+LG+SGLRVS L  G WV+FG Q+  + A+ L+    + GVN FD AEVYA G+AE I+G  I++ GW+RS +V++TK++WGG+   ++GLSRKHI+EG K SL+RL ++YVDV++ +RPD++TP+EE VRAM +VI++G A YWGTS WSA +I EA+ +A + +++ P+ EQ EY++  R K E +   LY   G+   TWSPLA
Sbjct:   89 MPHRNLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLA 299          
BLAST of FC921285 vs. ExPASy Swiss-Prot
Match: KCAB1_HUMAN (Voltage-gated potassium channel subunit beta-1 OS=Homo sapiens GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.491e-63
Identity = 107/211 (50.71%), Postives = 154/211 (72.99%), Query Frame = 2
Query:   83 MQYRHLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNVLSRHKGEAEYLPLYSNYGIXLTTWSPLA 715
            M +R+LG+SGLRVS L  G WV+FG Q+  + A+ L+    + GVN FD AEVYA G+AE I+G  I++ GW+RS +V++TK++WGG+   ++GLSRKHI+EG K SL+RL ++YVDV++ +RPD++TP+EE VRAM +VI++G A YWGTS WSA +I EA+ +A + +++ P+ EQ EY++  R K E +   LY   G+   TWSPLA
Sbjct:   89 MPHRNLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLA 299          
BLAST of FC921285 vs. ExPASy Swiss-Prot
Match: KCAB3_RAT (Voltage-gated potassium channel subunit beta-3 OS=Rattus norvegicus GN=Kcnab3 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.718e-62
Identity = 109/211 (51.66%), Postives = 149/211 (70.62%), Query Frame = 2
Query:   83 MQYRHLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNVLSRHKGEAEYLPLYSNYGIXLTTWSPLA 715
            M+YR+LG+SGLRVS L  G WV+FG+Q+  + A+ LL    +HGVN FD AEVYA G+AE  +G  ++  GW+RS  V++TKIFWGGQ   ++GLSRKHI+EG + SL RL ++YVD+++ +R D S+P+EE VRAM YVI++G A YWGTS WSA +I EA+ +A + +L+ P+ EQ E +   R K E +   LY   G+   TWSPLA
Sbjct:   78 MKYRNLGKSGLRVSCLGLGTWVTFGSQISDETAEDLLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFWGGQAETERGLSRKHIIEGLQGSLDRLQLEYVDIVFANRSDPSSPMEEIVRAMTYVINQGLALYWGTSRWSAAEIMEAYSMARQFNLIPPVCEQAENHFFQREKVEMQLPELYHKIGVGSVTWSPLA 288          
BLAST of FC921285 vs. ExPASy Swiss-Prot
Match: KCAB3_HUMAN (Voltage-gated potassium channel subunit beta-3 OS=Homo sapiens GN=KCNAB3 PE=1 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 9.158e-61
Identity = 105/211 (49.76%), Postives = 148/211 (70.14%), Query Frame = 2
Query:   83 MQYRHLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNVLSRHKGEAEYLPLYSNYGIXLTTWSPLA 715
            M+YR+LG+SGLRVS L  G WV+FG+Q+  + A+ +L    +HGVN FD AEVYA G+AE  +G  ++  GW+RS  V++TKIFWGGQ   ++GLSRKHI+EG + SL+RL + YVD+++ +R D + P+EE VRAM YVI++G A YWGTS W A +I EA+ +A + +L+ P+ EQ E+++  R K E +   LY   G+   TW PLA
Sbjct:   78 MKYRNLGKSGLRVSCLGLGTWVTFGSQISDETAEDVLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFWGGQAETERGLSRKHIIEGLRGSLERLQLGYVDIVFANRSDPNCPMEEIVRAMTYVINQGLALYWGTSRWGAAEIMEAYSMARQFNLIPPVCEQAEHHLFQREKVEMQLPELYHKIGVGSVTWYPLA 288          
BLAST of FC921285 vs. ExPASy Swiss-Prot
Match: KCAB_SCHPO (Putative voltage-gated potassium channel subunit beta OS=Schizosaccharomyces pombe GN=SPCC965.06 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.936e-60
Identity = 112/211 (53.08%), Postives = 148/211 (70.14%), Query Frame = 2
Query:   89 YRHLGRSGLRVSQLAYGAWVSFGNQ-LDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGG--QGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNVLSRHKGEAEYLPLYSNYGIXLTTWSPL 712
            +R LGRSGL+VS  + G W+++GN+  DV+  K+ L+   D G+N FD AE+Y+NG +E +MG+AI+ELGW RS+ V++TK+F+G   + PN  GLSRKHI+EG  ASLKRL + YVDVI  HRPD S P+EE VRA   +I  G AFYWGTSEWSA +I  A  IA + +L+ P+ +QP+YN L+R   E + LPL   YG   T WSPL
Sbjct:   15 FRFLGRSGLKVSAFSLGGWLTYGNEGYDVEHTKNCLKQAWDLGINTFDTAEIYSNGNSETVMGKAIKELGWDRSEYVITTKVFFGAGTKLPNTTGLSRKHIIEGLNASLKRLGLPYVDVIMAHRPDPSVPMEEVVRAFTQLIQDGKAFYWGTSEWSAFEIEHAHHIATKYNLIAPVADQPQYNYLTRDHFEKDLLPLQQIYGYGATVWSPL 225          
BLAST of FC921285 vs. ExPASy Swiss-Prot
Match: YAJO_ECOLI (Uncharacterized oxidoreductase yajO OS=Escherichia coli (strain K12) GN=yajO PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.055e-32
Identity = 85/219 (38.81%), Postives = 128/219 (58.45%), Query Frame = 2
Query:   83 MQYRHLGRSGLRVSQLAYGAWVSFGNQ--------LDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNVLSRHKGEAEYLPLYSNYGIXLTTWSPLA 715
            MQY  LG++ LRVS+L  G  ++FG          L  + ++ +++   + G+NFFD A  Y++G +EEI+G+A+R+   +R D+VV+TK+F    G   +GLSR  I+     SL+RL MDYVD++  HR D +TPIEET+ A+N V+  G A Y G S   A Q  +A  + ++      +  Q  YN++ R + E E LPL    G+ +  WSPLA
Sbjct:    1 MQYNPLGKTDLRVSRLCLGC-MTFGEPDRGNHAWTLPEESSRPIIKRALEGGINFFDTANSYSDGSSEEIVGRALRDFA-RREDVVVATKVFHR-VGDLPEGLSRAQILRSIDDSLRRLGMDYVDILQIHRWDYNTPIEETLEALNDVVKAGKARYIGASSMHASQFAQALELQKQHGWAQFVSMQDHYNLIYREE-EREMLPLCYQEGVAVIPWSPLA 215          
BLAST of FC921285 vs. ExPASy Swiss-Prot
Match: YGHZ_ECOLI (Uncharacterized protein yghZ OS=Escherichia coli (strain K12) GN=yghZ PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.577e-28
Identity = 75/215 (34.88%), Postives = 121/215 (56.28%), Query Frame = 2
Query:   83 MQYRHLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYAN--GRAEEIMGQAIRE-LGWKRSDIVVSTKIFWG-GQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNVLSRHKGEAEYLPLYSNYGIXLTTWSPLA 715
            MQYR+ G+SGLR+  L+ G W +FG+   ++  +++L+   D G+  FD A  Y    G AEE  G+ +RE     R ++++STK  +    GP   G SRK+++     SLKR+ ++YVD+ Y HR D +TP+EET  A+ + +  G A Y G S +S ++ T+      R   +  ++ QP YN+L+R   ++  L    N G+    ++PLA
Sbjct:   13 MQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPER-TQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLA 226          
BLAST of FC921285 vs. ExPASy Swiss-Prot
Match: YGHZ_ECO57 (Uncharacterized protein yghZ OS=Escherichia coli O157:H7 GN=yghZ PE=4 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.577e-28
Identity = 73/215 (33.95%), Postives = 120/215 (55.81%), Query Frame = 2
Query:   83 MQYRHLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYAN--GRAEEIMGQAIRE-LGWKRSDIVVSTKIFWG-GQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNVLSRHKGEAEYLPLYSNYGIXLTTWSPLA 715
            MQYR+ G+SGLR+  L+ G W +FG+   ++  +++L+   D G+  FD A  Y    G AEE  G+ +RE     R ++++STK  +    GP   G SRK+++     SLKR+ ++YVD+ Y HR D +TP+EET  A+ + +  G A Y G S +S ++  +   +      +  ++ QP YN+L+R   ++  L    N G+    ++PLA
Sbjct:   13 MQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLHEWK-IPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLA 226          
The following BLAST results are available for this feature:
BLAST of FC921285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
KCAB1_MUSPU1.971e-6351.18Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB3_XENLA5.736e-6351.18Voltage-gated potassium channel subunit beta-3 OS=... [more]
KCAB1_RABIT7.491e-6350.71Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_HUMAN7.491e-6350.71Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB3_RAT3.718e-6251.66Voltage-gated potassium channel subunit beta-3 OS=... [more]
KCAB3_HUMAN9.158e-6149.76Voltage-gated potassium channel subunit beta-3 OS=... [more]
KCAB_SCHPO5.936e-6053.08Putative voltage-gated potassium channel subunit b... [more]
YAJO_ECOLI1.055e-3238.81Uncharacterized oxidoreductase yajO OS=Escherichia... [more]
YGHZ_ECOLI1.577e-2834.88Uncharacterized protein yghZ OS=Escherichia coli (... [more]
YGHZ_ECO571.577e-2833.95Uncharacterized protein yghZ OS=Escherichia coli O... [more]

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Properties
Property NameValue
Genbank descriptionC32103C03EF RVDevelopN Citrus clementina cDNA clone C32103C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921285 ID=FC921285; Name=FC921285; organism=Citrus clementina; type=EST; length=716bp
GACAGTTTCCAGATTTTCTCGTACACTTCCCCAACAGGCCAAAAAAACAG
ACAACAAAAAGGTTAAAAAAGGAAATTACAAAATGCAATACAGGCACCTG
GGGAGATCGGGGCTGAGAGTGAGCCAGCTCGCGTACGGAGCGTGGGTCAG
CTTCGGGAACCAGTTGGACGTGAAGGAGGCGAAGTCGCTCTTGCAATGCT
GCCGCGACCACGGCGTCAACTTCTTCGACAATGCCGAGGTCTACGCCAAC
GGCCGCGCGGAAGAGATCATGGGCCAGGCCATTCGCGAGCTCGGGTGGAA
GCGATCCGACATCGTCGTTTCCACCAAGATCTTTTGGGGCGGCCAGGGCC
CCAACGATAAAGGCCTCTCCAGAAAACACATTGTCGAGGGCACCAAAGCT
TCCTTGAAACGCCTCGACATGGATTACGTCGACGTTATTTATTGTCACAG
GCCGGACACGTCGACACCGATAGAGGAGACGGTGAGGGCGATGAATTATG
TGATTGATAAGGGGTGGGCGTTTTACTGGGGAACAAGTGAGTGGTCGGCG
CAGCAGATCACCGAGGCTTGGGGGATTGCTGAGCGCTTGGATTTGGTGGG
CCCCATTGTTGAGCAACCAGAGTATAACGTGTTGTCTAGGCACAAGGGTG
AAGCTGAGTACCTCCCTCTATACTCCAATTATGGCATANGTCTTACCACA
TGGAGTCCACTTGCAT
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