FC921294

Overview
NameFC921294
Unique NameFC921294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: GLYR1_PONAB (Putative oxidoreductase GLYR1 OS=Pongo abelii GN=GLYR1 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 58/187 (31.02%), Postives = 94/187 (50.27%), Query Frame = 2
Query:  137 SPTNTRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKLAKSITIATTMVG 697
            +PT+ ++G++G G+MG  + ++LL  G+TVTV++RT  K    +  GA L  +P  + S  D+ F+ V  P   + ++L P SG L G+RP    VDM+T               +    ++APVSG  + +  G L I A GD  + +  +  F  MGK ++      G+    AK + I   + G
Sbjct:  264 TPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWDRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGP-SGVLQGIRPRKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFF----LGEVGNAAKMMLIVNMVQG 445          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: GLXR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=glxR PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 64/179 (35.75%), Postives = 97/179 (54.19%), Query Frame = 2
Query:  152 RVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSK-AQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLAKSITIA 682
            ++G+IG GIMG  M  +L  AG+ + V   T+   A  LL +GA   ++   +   SD++F +V     V  VL   +    + L+ G  IVDM++                    +DAPVSGG+ GA+ GTL+I  GGDE+V +++ PLF L+GK +  +GG+G GQ  K+A  I +A
Sbjct:    2 KLGFIGLGIMGTPMAINLARAGHQLHV--TTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLK-GKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVA 177          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: GLYR1_MOUSE (Putative oxidoreductase GLYR1 OS=Mus musculus GN=Glyr1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.234e-21
Identity = 60/187 (32.09%), Postives = 94/187 (50.27%), Query Frame = 2
Query:  137 SPTNTRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKLAKSITIATTMVG 697
            +PT+ ++G++G G+MG  + ++LL  G+TVTV+NRT  K       GA L  +P  + S  D+ F+ V  P   + ++L P SG L G+RPG   VDM+T               +    ++APVSG  + +  G L I A GD  + +  +  F  MGK ++      G+    AK + I   + G
Sbjct:  263 TPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKE------GARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGP-SGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFF----LGEVGNAAKMMLIVNMVQG 438          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: 3HIDH_DICDI (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=hibA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.576e-17
Identity = 52/188 (27.66%), Postives = 93/188 (49.47%), Query Frame = 2
Query:  134 ASPTNTRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLAKSITIATTMV 694
            ++ ++  VG+IG G MG     +L+  G+ + VF+ +      L + GA +A+SP  +A ++DV+ +++   + V++V     +G    +RPG +++D +T                  + +D PVSGG  GA+ GTL    GG E            MGK + + G  G GQ AK+  ++ +  +M+
Sbjct:   18 STSSSKTVGFIGLGNMGGHQAINLIKKGHNLIVFDMSKDNMNRLKEKGAKIANSPAEVAKEADVIVTMLPASAHVKNVYC-GENGIFQTVRPGTLLLDSSTIDPATAREVASIAKKHQSTMLDCPVSGGTGGAEAGTLTFMVGGSEQDFNTAKTYLECMGKNIVHCGDVGTGQVAKVCNNLVLGISMI 204          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: 3HIDH_BOVIN (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Bos taurus GN=HIBADH PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.511e-17
Identity = 57/199 (28.64%), Postives = 95/199 (47.74%), Query Frame = 2
Query:  107 MATVASTDPASPTNTRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHP-SSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMG-KVNYMGGSGKGQFAKLAKSITIATTMVG 697
            +A V S   AS   T VG+IG G MG  M  +L+  GY + +++      +  LD G  +  SP  +A ++D + +++  P+ +  +  +  ++G L  ++ G +++D +T                    +DAPVSGG   A++G L    GG E        L   MG  V Y G  G GQ AK+  ++ +A +M+G
Sbjct:   28 LAAVCSRSMAS--KTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITML--PTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIG 222          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: Y229_SYNY3 (Uncharacterized oxidoreductase slr0229 OS=Synechocystis sp. (strain PCC 6803) GN=slr0229 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 55/178 (30.90%), Postives = 86/178 (48.31%), Query Frame = 2
Query:  149 TRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSK--AQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMG-KVNYMGGSGKGQFAKLAKSI 673
            +++   G G+MG  M  +L+  GY    +NRTL +   Q     G  +  S    A+ +D++ + VG   DV+ ++L  S G     +P  +I+D +T               +    +DAPV+GGD GA  GTL I  GGD S  ++  P+   +G K+ + G SG GQ  KL   +
Sbjct:    4 SKIAVFGLGVMGSPMAQNLVKNGYQTVGYNRTLERPSVQEAAKAGVKVVTSIAVAAANADIILTCVGDEKDVQQLILG-SGGIAEYAKPQALIIDCSTIGKTAAYELATNLKLQGLRFLDAPVTGGDVGAINGTLTIMVGGDISDFEEALPVLKSIGEKIVHCGPSGSGQAVKLCNQV 180          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: 3HIDH_RAT (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hibadh PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.334e-16
Identity = 57/199 (28.64%), Postives = 97/199 (48.74%), Query Frame = 2
Query:  107 MATVASTDPASPTNTRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHP-SSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMG-KVNYMGGSGKGQFAKLAKSITIATTMVG 697
            +A V S   AS   T VG+IG G MG  M  +L+  GY + +++      +   + G  +A SP  +A ++D + +++  PS +  + ++  ++G L  ++ G +++D +T                    +DAPVSGG   A++G L    GG E+       L   MG  V Y G  G GQ AK+  ++ +A +M+G
Sbjct:   27 LAAVCSRSMAS--KTPVGFIGLGNMGNPMAKNLIKHGYPLILYDVFPDVCKEFKEAGEQVASSPADVAEKADRIITML--PSSMNSIEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVENEFAAAQELLGCMGSNVLYCGAVGSGQSAKICNNMLLAISMIG 221          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: 3HIDH_MOUSE (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Mus musculus GN=Hibadh PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 58/199 (29.15%), Postives = 96/199 (48.24%), Query Frame = 2
Query:  107 MATVASTDPASPTNTRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHP-SSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMG-KVNYMGGSGKGQFAKLAKSITIATTMVG 697
            +A V S   AS   T VG+IG G MG  M  +L+  GY + +++      +   + G  +A SP  +A ++D + +++  PS +  V ++  ++G L  ++ G +++D +T                    +DAPVSGG   A++G L    GG E        L   MG  V Y G  G GQ AK+  ++ +A +M+G
Sbjct:   27 LAAVCSRSMAS--KTPVGFIGLGNMGNPMAKNLMKHGYPLILYDVFPDVCKEFKEAGEQVASSPAEVAEKADRIITML--PSSMNAVEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLECMGSNVVYCGAVGTGQSAKICNNMLLAISMIG 221          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: 3HIDH_PONAB (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Pongo abelii GN=HIBADH PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 56/198 (28.28%), Postives = 93/198 (46.97%), Query Frame = 2
Query:  110 ATVASTDPASPTNTRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHP-SSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMG-KVNYMGGSGKGQFAKLAKSITIATTMVG 697
            A V S   AS   T VG+IG G MG  M  +L+  GY + +++      +   D G  +  SP  +A ++D + +++  P+ +  +  +  ++G L  ++ G +++D +T                    +DAPVSGG   A++G L    GG E        L   MG  V Y G  G GQ AK+  ++ +A +M+G
Sbjct:   29 AAVCSRSVAS--KTPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITML--PTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIG 222          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: 3HIDH_HUMAN (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Homo sapiens GN=HIBADH PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 56/198 (28.28%), Postives = 93/198 (46.97%), Query Frame = 2
Query:  110 ATVASTDPASPTNTRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHP-SSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMG-KVNYMGGSGKGQFAKLAKSITIATTMVG 697
            A V S   AS   T VG+IG G MG  M  +L+  GY + +++      +   D G  +  SP  +A ++D + +++  P+ +  +  +  ++G L  ++ G +++D +T                    +DAPVSGG   A++G L    GG E        L   MG  V Y G  G GQ AK+  ++ +A +M+G
Sbjct:   29 AAVCSRSVAS--KTPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITML--PTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIG 222          
The following BLAST results are available for this feature:
BLAST of FC921294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
GLYR1_PONAB4.008e-2131.02Putative oxidoreductase GLYR1 OS=Pongo abelii GN=G... [more]
GLXR_ECOLI4.008e-2135.752-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
GLYR1_MOUSE5.234e-2132.09Putative oxidoreductase GLYR1 OS=Mus musculus GN=G... [more]
3HIDH_DICDI1.576e-1727.66Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
3HIDH_BOVIN3.511e-1728.643-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
Y229_SYNY34.585e-1730.90Uncharacterized oxidoreductase slr0229 OS=Synechoc... [more]
3HIDH_RAT1.334e-1628.643-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_MOUSE2.972e-1629.153-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_PONAB5.070e-1628.283-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_HUMAN5.070e-1628.283-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]

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Properties
Property NameValue
Genbank descriptionC32103C12EF RVDevelopN Citrus clementina cDNA clone C32103C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921294 ID=FC921294; Name=FC921294; organism=Citrus clementina; type=EST; length=698bp
GATGCCACCGCTACTGCCACTCCTATTGGTCCTGCGCTCCCGCACGGCTC
ACTCTTACTCCCGCTCAGTTTCTTCACTCGTGACTCTCCTCCGCCGCCGC
CGCTCAATGGCTACTGTCGCATCCACCGATCCCGCCAGCCCCACCAACAC
CCGCGTCGGCTGGATCGGCACAGGCATCATGGGTCGATCCATGTGCGCCC
ACTTACTCAATGCCGGCTACACCGTCACCGTCTTCAACCGCACCCTCTCC
AAGGCCCAGCCTCTCCTCGACATCGGTGCCCACCTCGCCGACTCCCCCCA
TTCGCTCGCTTCCCAATCCGACGTCGTTTTCTCCATAGTCGGCTACCCTT
CCGACGTCCGCCACGTCCTCCTCCACCCCTCTTCCGGCGCCCTCTCTGGC
CTTCGTCCCGGTGGAATCATCGTCGACATGACCACCTCCGAACCCTCCCT
CGCCTCCGAGTTATCCGCCGCCGCCTCCTCCAAAAACTGCTCCGCCATCG
ACGCCCCTGTGTCCGGCGGTGACCGCGGCGCCAAAACCGGAACCCTCGCT
ATATTCGCCGGAGGGGACGAATCCGTAGTTCAAAAGTTAAATCCCCTTTT
TGCCCTCATGGGGAAAGTTAATTACATGGGTGGCAGTGGGAAAGGACAAT
TCGCGAAGCTGGCGAAATCAATCACGATCGCTACTACGATGGTTGGAT
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