FC921307
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: EIF3F_USTMA (Eukaryotic translation initiation factor 3 subunit F OS=Ustilago maydis GN=UM00175 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.314e-17 Identity = 69/223 (30.94%), Postives = 114/223 (51.12%), Query Frame = 3 Query: 42 SRPIEKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLF------HNYVPNPVLVIID-VQPKELGIPTKAYYDVEEVKENATQKSQK-VFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANE-VTGKLTALKGLDARLREIRGYLDLVI 683 SR + V VHP+ L SI+D+Y R D + RV+G LLG+ + +++ N +AVP ED ++ + +D YH SMY + +++ E +VGWY+T P+L I + H V + ID +P LGI K+Y AT K++ VF+ +P+ + H E +++S LA++ ++ LT L L L++++ LD V+ Sbjct: 26 SRSVTGVHVHPVALFSILDHYLR-RNDGQHRVIGTLLGTRTESEIEIKNCFAVPHLEDAEEGQVQ-VDMEYHRSMYELCQKVRPDEVIVGWYATSPELNTYSALIQDFYSRETAPHQAVHLTMDTTIDGSKPSGLGI--KSYI---SSPLGATPKAENCVFLPLPTNL-LHSTPE-----------HSSLSLLASQNISSPLTDLDALAVSLKQVQSQLDRVL 229
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: CSN6_XENTR (COP9 signalosome complex subunit 6 OS=Xenopus tropicalis GN=cops6 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.407e-16 Identity = 57/223 (25.56%), Postives = 112/223 (50.22%), Query Frame = 3 Query: 60 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEIL 716 V +HPLV+L+I D++ R+ + +V+G L+G ++V NS+ + + +++ I + Y+ + FK++ +GWY+TG +D+ +H+ + +P+ + ++ K +P Y E V + ++ + + +A E E IGV+H+ R + ST+A + + +A+K L +R+R I Y+ ++P NHEIL Sbjct: 33 VALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSQINEEKITI---NKEYYYTKEEQFKQVFKDMEFLGWYTTGGTPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVY---ESVIDIVNGEATMLLAELSYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVRLILEYVRAAEAGEVPFNHEIL 249
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: CSN6_PONAB (COP9 signalosome complex subunit 6 OS=Pongo abelii GN=COPS6 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.837e-16 Identity = 56/223 (25.11%), Postives = 112/223 (50.22%), Query Frame = 3 Query: 60 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEIL 716 V +HPLV+L+I D++ R+ + +V+G L+G ++V NS+ + ++ +D Y+ + FK++ + +GWY+TG +D+ +H+ + +P+ + ++ K +P + E V + ++ +F + +A E E IGV+H+ R + ST+A + + +A+K L +R++ I Y+ ++P NHEIL Sbjct: 42 VALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEIL 258
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: CSN6_PIG (COP9 signalosome complex subunit 6 OS=Sus scrofa GN=COPS6 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.837e-16 Identity = 56/223 (25.11%), Postives = 112/223 (50.22%), Query Frame = 3 Query: 60 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEIL 716 V +HPLV+L+I D++ R+ + +V+G L+G ++V NS+ + ++ +D Y+ + FK++ + +GWY+TG +D+ +H+ + +P+ + ++ K +P + E V + ++ +F + +A E E IGV+H+ R + ST+A + + +A+K L +R++ I Y+ ++P NHEIL Sbjct: 37 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEIL 253
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: CSN6_MOUSE (COP9 signalosome complex subunit 6 OS=Mus musculus GN=Cops6 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.837e-16 Identity = 56/223 (25.11%), Postives = 112/223 (50.22%), Query Frame = 3 Query: 60 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEIL 716 V +HPLV+L+I D++ R+ + +V+G L+G ++V NS+ + ++ +D Y+ + FK++ + +GWY+TG +D+ +H+ + +P+ + ++ K +P + E V + ++ +F + +A E E IGV+H+ R + ST+A + + +A+K L +R++ I Y+ ++P NHEIL Sbjct: 38 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEIL 254
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: CSN6_HUMAN (COP9 signalosome complex subunit 6 OS=Homo sapiens GN=COPS6 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.837e-16 Identity = 56/223 (25.11%), Postives = 112/223 (50.22%), Query Frame = 3 Query: 60 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEIL 716 V +HPLV+L+I D++ R+ + +V+G L+G ++V NS+ + ++ +D Y+ + FK++ + +GWY+TG +D+ +H+ + +P+ + ++ K +P + E V + ++ +F + +A E E IGV+H+ R + ST+A + + +A+K L +R++ I Y+ ++P NHEIL Sbjct: 41 VALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEIL 257
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: CSN6_BOVIN (COP9 signalosome complex subunit 6 OS=Bos taurus GN=COPS6 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16 Identity = 56/223 (25.11%), Postives = 112/223 (50.22%), Query Frame = 3 Query: 60 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEIL 716 V +HPLV+L+I D++ R+ + +V+G L+G ++V NS+ + ++ +D Y+ + FK++ + +GWY+TG +D+ +H+ + +P+ + ++ K +P + E V + ++ +F + +A E E IGV+H+ R + ST+A + + +A+K L +R++ I Y+ ++P NHEIL Sbjct: 38 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELDFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEIL 254
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPS (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S5-1 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.093e-16 Identity = 52/171 (30.41%), Postives = 92/171 (53.80%), Query Frame = 3 Query: 60 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV 572 V VHP+VL +VD + R ++ RV+G LLGS KG V+V+N + VP +E D + +Y MY + +++N+ E VVGW++TG + + IH+ + NPV + +D + + ++Y ++ K+ +F +P E+ ++E E G++ L + V Sbjct: 8 VRVHPVVLFQVVDAFERRNAESH-RVIGTLLGSVEKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRSYVCIQLGVPGG--KTGCMFTPIPVELTSYEPETFGLKLLQKTV 172
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPE (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila persimilis GN=eIF3-S5-1 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.093e-16 Identity = 52/171 (30.41%), Postives = 92/171 (53.80%), Query Frame = 3 Query: 60 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV 572 V VHP+VL +VD + R ++ RV+G LLGS KG V+V+N + VP +E D + +Y MY + +++N+ E VVGW++TG + + IH+ + NPV + +D + + ++Y ++ K+ +F +P E+ ++E E G++ L + V Sbjct: 8 VRVHPVVLFQVVDAFERRNAESH-RVIGTLLGSVEKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRSYVCIQLGVPGG--KTGCMFTPIPVELTSYEPETFGLKLLQKTV 172
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: CSN6_DICDI (COP9 signalosome complex subunit 6 OS=Dictyostelium discoideum GN=csn6 PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.093e-16 Identity = 61/226 (26.99%), Postives = 110/226 (48.67%), Query Frame = 3 Query: 57 KVIVHPLVLLSIVDNYNRVAKDTRK----RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDV-QPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR-DVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEIL 716 +V +HPLVL++I D++ R + RV+GV+LG V++ NS+ + + DK LD Y Y +++ ++GWYSTG ++ ++D+ +H+ + +P+ +++D PK +P Y E + +FV P +I E E IGV H+ + + S L + + A+ L+ R++ + YL V +++LP IL Sbjct: 27 EVDLHPLVLINISDHFTRTKVQSNYQDNCRVIGVILGVQNGRNVEICNSFEMVYATVDKQ---LVLDIEYLRKKY---EQLFPLYDLLGWYSTGSQVSKDDILLHKQISEHNESPLYLMLDTDSPKSKDLPVIIY---ESELHIVNDEPTTIFVKTPYKIQTGEAERIGVNHIAKVTPSGSEGSGLTSHLFTMHNAISMLNIRVKALSDYLQAVKEKRLPYEQNIL 243 The following BLAST results are available for this feature:
BLAST of FC921307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC921307 ID=FC921307; Name=FC921307; organism=Citrus clementina; type=EST; length=723bpback to top |