FC921307

Overview
NameFC921307
Unique NameFC921307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11415 contig Ccv1_Contig11415:86..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: EIF3F_USTMA (Eukaryotic translation initiation factor 3 subunit F OS=Ustilago maydis GN=UM00175 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.314e-17
Identity = 69/223 (30.94%), Postives = 114/223 (51.12%), Query Frame = 3
Query:   42 SRPIEKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLF------HNYVPNPVLVIID-VQPKELGIPTKAYYDVEEVKENATQKSQK-VFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANE-VTGKLTALKGLDARLREIRGYLDLVI 683
            SR +  V VHP+ L SI+D+Y R   D + RV+G LLG+  +  +++ N +AVP  ED ++  +  +D  YH SMY + +++   E +VGWY+T P+L      I   +      H  V   +   ID  +P  LGI  K+Y         AT K++  VF+ +P+ +  H   E            +++S LA++ ++  LT L  L   L++++  LD V+
Sbjct:   26 SRSVTGVHVHPVALFSILDHYLR-RNDGQHRVIGTLLGTRTESEIEIKNCFAVPHLEDAEEGQVQ-VDMEYHRSMYELCQKVRPDEVIVGWYATSPELNTYSALIQDFYSRETAPHQAVHLTMDTTIDGSKPSGLGI--KSYI---SSPLGATPKAENCVFLPLPTNL-LHSTPE-----------HSSLSLLASQNISSPLTDLDALAVSLKQVQSQLDRVL 229          
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: CSN6_XENTR (COP9 signalosome complex subunit 6 OS=Xenopus tropicalis GN=cops6 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.407e-16
Identity = 57/223 (25.56%), Postives = 112/223 (50.22%), Query Frame = 3
Query:   60 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEIL 716
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +  + +++   I   +  Y+ +    FK++      +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   Y   E V +    ++  +   +   +A  E E IGV+H+ R     +   ST+A  +  + +A+K L +R+R I  Y+      ++P NHEIL
Sbjct:   33 VALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSQINEEKITI---NKEYYYTKEEQFKQVFKDMEFLGWYTTGGTPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVY---ESVIDIVNGEATMLLAELSYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVRLILEYVRAAEAGEVPFNHEIL 249          
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: CSN6_PONAB (COP9 signalosome complex subunit 6 OS=Pongo abelii GN=COPS6 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.837e-16
Identity = 56/223 (25.11%), Postives = 112/223 (50.22%), Query Frame = 3
Query:   60 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEIL 716
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R     +   ST+A  +  + +A+K L +R++ I  Y+      ++P NHEIL
Sbjct:   42 VALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEIL 258          
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: CSN6_PIG (COP9 signalosome complex subunit 6 OS=Sus scrofa GN=COPS6 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.837e-16
Identity = 56/223 (25.11%), Postives = 112/223 (50.22%), Query Frame = 3
Query:   60 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEIL 716
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R     +   ST+A  +  + +A+K L +R++ I  Y+      ++P NHEIL
Sbjct:   37 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEIL 253          
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: CSN6_MOUSE (COP9 signalosome complex subunit 6 OS=Mus musculus GN=Cops6 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.837e-16
Identity = 56/223 (25.11%), Postives = 112/223 (50.22%), Query Frame = 3
Query:   60 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEIL 716
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R     +   ST+A  +  + +A+K L +R++ I  Y+      ++P NHEIL
Sbjct:   38 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEIL 254          
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: CSN6_HUMAN (COP9 signalosome complex subunit 6 OS=Homo sapiens GN=COPS6 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.837e-16
Identity = 56/223 (25.11%), Postives = 112/223 (50.22%), Query Frame = 3
Query:   60 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEIL 716
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R     +   ST+A  +  + +A+K L +R++ I  Y+      ++P NHEIL
Sbjct:   41 VALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEIL 257          
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: CSN6_BOVIN (COP9 signalosome complex subunit 6 OS=Bos taurus GN=COPS6 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 56/223 (25.11%), Postives = 112/223 (50.22%), Query Frame = 3
Query:   60 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEIL 716
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R     +   ST+A  +  + +A+K L +R++ I  Y+      ++P NHEIL
Sbjct:   38 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELDFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEIL 254          
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPS (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.093e-16
Identity = 52/171 (30.41%), Postives = 92/171 (53.80%), Query Frame = 3
Query:   60 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV 572
            V VHP+VL  +VD + R   ++  RV+G LLGS  KG V+V+N + VP +E D        + +Y   MY + +++N+ E VVGW++TG  +  +   IH+ +     NPV + +D   +   +  ++Y  ++        K+  +F  +P E+ ++E E  G++ L + V
Sbjct:    8 VRVHPVVLFQVVDAFERRNAESH-RVIGTLLGSVEKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRSYVCIQLGVPGG--KTGCMFTPIPVELTSYEPETFGLKLLQKTV 172          
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPE (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila persimilis GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.093e-16
Identity = 52/171 (30.41%), Postives = 92/171 (53.80%), Query Frame = 3
Query:   60 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV 572
            V VHP+VL  +VD + R   ++  RV+G LLGS  KG V+V+N + VP +E D        + +Y   MY + +++N+ E VVGW++TG  +  +   IH+ +     NPV + +D   +   +  ++Y  ++        K+  +F  +P E+ ++E E  G++ L + V
Sbjct:    8 VRVHPVVLFQVVDAFERRNAESH-RVIGTLLGSVEKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRSYVCIQLGVPGG--KTGCMFTPIPVELTSYEPETFGLKLLQKTV 172          
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: CSN6_DICDI (COP9 signalosome complex subunit 6 OS=Dictyostelium discoideum GN=csn6 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.093e-16
Identity = 61/226 (26.99%), Postives = 110/226 (48.67%), Query Frame = 3
Query:   57 KVIVHPLVLLSIVDNYNRVAKDTRK----RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDV-QPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR-DVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEIL 716
            +V +HPLVL++I D++ R    +      RV+GV+LG      V++ NS+ + +   DK      LD  Y    Y   +++     ++GWYSTG ++ ++D+ +H+    +  +P+ +++D   PK   +P   Y   E        +   +FV  P +I   E E IGV H+ +     +  S L + +     A+  L+ R++ +  YL  V +++LP    IL
Sbjct:   27 EVDLHPLVLINISDHFTRTKVQSNYQDNCRVIGVILGVQNGRNVEICNSFEMVYATVDKQ---LVLDIEYLRKKY---EQLFPLYDLLGWYSTGSQVSKDDILLHKQISEHNESPLYLMLDTDSPKSKDLPVIIY---ESELHIVNDEPTTIFVKTPYKIQTGEAERIGVNHIAKVTPSGSEGSGLTSHLFTMHNAISMLNIRVKALSDYLQAVKEKRLPYEQNIL 243          
The following BLAST results are available for this feature:
BLAST of FC921307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
EIF3F_USTMA6.314e-1730.94Eukaryotic translation initiation factor 3 subunit... [more]
CSN6_XENTR1.407e-1625.56COP9 signalosome complex subunit 6 OS=Xenopus trop... [more]
CSN6_PONAB1.837e-1625.11COP9 signalosome complex subunit 6 OS=Pongo abelii... [more]
CSN6_PIG1.837e-1625.11COP9 signalosome complex subunit 6 OS=Sus scrofa G... [more]
CSN6_MOUSE1.837e-1625.11COP9 signalosome complex subunit 6 OS=Mus musculus... [more]
CSN6_HUMAN1.837e-1625.11COP9 signalosome complex subunit 6 OS=Homo sapiens... [more]
CSN6_BOVIN2.399e-1625.11COP9 signalosome complex subunit 6 OS=Bos taurus G... [more]
EI3F1_DROPS4.093e-1630.41Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROPE4.093e-1630.41Eukaryotic translation initiation factor 3 subunit... [more]
CSN6_DICDI4.093e-1626.99COP9 signalosome complex subunit 6 OS=Dictyosteliu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32103E01EF RVDevelopN Citrus clementina cDNA clone C32103E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921307 ID=FC921307; Name=FC921307; organism=Citrus clementina; type=EST; length=723bp
GAGATTCGAATATGGACGTGATAAAGACGCAGCAAATTTCATCGAGACCC
ATAGAGAAGGTCATAGTTCACCCGCTCGTCTTACTAAGCATCGTCGACAA
TTACAACCGCGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCGTCCTCC
TCGGTAGCTCCTTCAAAGGCACCGTCGATGTCTCCAACAGCTACGCAGTG
CCTTTTGAGGAAGATGACAAAGACCCAGGAATATGGTTTCTCGACCACAA
CTACCATGAATCAATGTATTCAATGTTCAAAAGAATCAATGCCAAGGAGC
ATGTCGTAGGTTGGTACAGTACAGGACCCAAGCTACGAGAGAATGATCTT
GACATTCACCAATTATTTCACAACTATGTCCCAAATCCTGTATTGGTCAT
TATTGATGTCCAACCAAAGGAGCTTGGAATACCCACCAAGGCTTACTATG
ATGTTGAGGAGGTTAAAGAGAATGCTACTCAGAAAAGCCAAAAGGTCTTT
GTACACGTGCCATCAGAAATTGCCGCTCATGAAGTCGAAGAAATCGGAGT
GGAGCACTTGCTAAGGGACGTGAAAGACACCACCATCAGTACACTTGCAA
ATGAGGTCACTGGAAAACTTACAGCCCTAAAGGGTCTGGATGCTCGTTTG
CGTGAGATCCGTGGTTACCTTGACCTTGTTATTGATGAGAAACTTCCGTT
GAATCACGAGATACTTTACCATT
back to top