FC921307

Overview
NameFC921307
Unique NameFC921307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11415 contig Ccv1_Contig11415:86..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPFC (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_008750 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 63/227 (27.75%), Postives = 105/227 (46.26%), Query Frame = 3
Query:   60 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGS-SFKGT-VDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNY----VPNP-VLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRG-------YLDLVIDEKLP 698
            V++ P  + SI+D+  R   D ++RV+G LLG+ S  GT V++ +++AV   E      +   D  Y + M ++  + N KE +VGWY+T  +L      I   +        P+P V + +  +P +  I T+AY                 F+ VP EI   E E+ G+E  +   KD       +  T   T ++ L+  + E+ G       Y++ VIDE+ P
Sbjct:   30 VVIQPQAIFSILDHSLRRNAD-QERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEV---DMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTVSTEPGK-DIETRAYISAPVGVTAERAADSAAFIPVPYEIRYGEAEKSGLE-AIASAKDA-----ESRATNIFTDIEALERAIEEVLGMIDRVSRYVESVIDEEAP 245          
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: CSN6_DROME (COP9 signalosome complex subunit 6 OS=Drosophila melanogaster GN=CSN6 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 50/224 (22.32%), Postives = 110/224 (49.11%), Query Frame = 3
Query:   60 VIVHPLVLLSIVDNYNRVAKD--TRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELG-IPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEIL 716
            + +HPLV+++I +++ R        ++V G L+G      +++ NS+ +  +    +  I   + +Y+      +K++ +    +GWY+TG     +D+ I +        P+++ ++   + +  +P K +   E + +    ++  +FV +   +A  E E IGV+H+ R   + +   S +A  +  + +A+K L+ R++ +  Y+  V   KL  N EIL
Sbjct:   54 ISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDETVI---NKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLNPLSRSVDHLPLKLF---ESLIDLVDGEATMLFVPLTYTLATEEAERIGVDHVARMTSNESGEKSVVAEHLVAQDSAIKMLNTRIKIVLQYIRDVEAGKLRANQEIL 271          
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPCL (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus clavatus GN=ACLA_026150 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 59/226 (26.11%), Postives = 101/226 (44.69%), Query Frame = 3
Query:   60 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGS-SFKGT-VDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNY----VPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRG-------YLDLVIDEKLP 698
            V++ P  + SI+D+  R   D ++RV+G LLG+ S  GT V++ +++AV   E      +   D  Y + M ++  + N KE +VGWY+T  +L      I   +        P+P + +         I T+AY                 F+ VP EI   E E+ G+E +      ++     N  T   T ++ L+  + ++ G       Y++ VIDE+ P
Sbjct:   30 VVIQPQAIFSILDHSLRRNAD-QERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEV---DMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTVSTEAGKDIETRAYISAPVGVTAERAADSAAFIPVPYEIRYGEAEKSGLEAI------SSARDAENRATNIFTDIEALERAIEDVLGMIDRVSRYVESVIDEEAP 245          
BLAST of FC921307 vs. ExPASy Swiss-Prot
Match: EI3F2_DROPS (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 53/218 (24.31%), Postives = 102/218 (46.79%), Query Frame = 3
Query:   57 KVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLG--SSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPN--PVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEK 692
            KV++HPLVL  I+D Y R AKD    V+G LLG  +   G ++++N ++V       +     LD  Y   M  + +    +E V+GW+STG  +    +++H+ +     N  P+ +++D   +   + T+ +  V       T+    +F  +P +I     + + + H+ R     T     L  E+   + A K +  +L  +  Y++ +++ K
Sbjct:   11 KVLLHPLVLFQIIDAYERRAKDV-PEVLGTLLGTVAGKTGRIEITNCFSVVHRMHGDNNCHIDLDLKYDNDMLELAQIAYPQEKVLGWFSTGKSVSAAAVELHEYYERQCHNGQPLHLLMDTSLRGQRMNTRIFCAVATGVPGGTK--GLMFSLLPMDIYFGSPDIVAMRHMGRQCAQPTKDAGRLLPELEQVVDATKDIQQKLDLVLRYINDILNRK 225          
The following BLAST results are available for this feature:
BLAST of FC921307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
EIF3F_ASPFC5.178e-1127.75Eukaryotic translation initiation factor 3 subunit... [more]
CSN6_DROME5.178e-1122.32COP9 signalosome complex subunit 6 OS=Drosophila m... [more]
EIF3F_ASPCL6.762e-1126.11Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROPS6.762e-1124.31Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC32103E01EF RVDevelopN Citrus clementina cDNA clone C32103E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921307 ID=FC921307; Name=FC921307; organism=Citrus clementina; type=EST; length=723bp
GAGATTCGAATATGGACGTGATAAAGACGCAGCAAATTTCATCGAGACCC
ATAGAGAAGGTCATAGTTCACCCGCTCGTCTTACTAAGCATCGTCGACAA
TTACAACCGCGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCGTCCTCC
TCGGTAGCTCCTTCAAAGGCACCGTCGATGTCTCCAACAGCTACGCAGTG
CCTTTTGAGGAAGATGACAAAGACCCAGGAATATGGTTTCTCGACCACAA
CTACCATGAATCAATGTATTCAATGTTCAAAAGAATCAATGCCAAGGAGC
ATGTCGTAGGTTGGTACAGTACAGGACCCAAGCTACGAGAGAATGATCTT
GACATTCACCAATTATTTCACAACTATGTCCCAAATCCTGTATTGGTCAT
TATTGATGTCCAACCAAAGGAGCTTGGAATACCCACCAAGGCTTACTATG
ATGTTGAGGAGGTTAAAGAGAATGCTACTCAGAAAAGCCAAAAGGTCTTT
GTACACGTGCCATCAGAAATTGCCGCTCATGAAGTCGAAGAAATCGGAGT
GGAGCACTTGCTAAGGGACGTGAAAGACACCACCATCAGTACACTTGCAA
ATGAGGTCACTGGAAAACTTACAGCCCTAAAGGGTCTGGATGCTCGTTTG
CGTGAGATCCGTGGTTACCTTGACCTTGTTATTGATGAGAAACTTCCGTT
GAATCACGAGATACTTTACCATT
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