FC921311

Overview
NameFC921311
Unique NameFC921311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10228 contig Ccv1_Contig10228:11..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921311 vs. ExPASy Swiss-Prot
Match: PSBO_CHLRE (Oxygen-evolving enhancer protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBO PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.723e-25
Identity = 57/122 (46.72%), Postives = 75/122 (61.48%), Query Frame = 2
Query:  317 ATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFA-FKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFXVSPDGTIKFVEKDGL 679
            A +A  ++ A   G    LT+DEIQ  TY++VKG+G AN CP ++ G  +    K G Y+ + FC+EPTSFTVK E   K    +F  TKLMTRLTYTLD + G F V  DG+ +  E DG+
Sbjct:   34 AAAAAALATAMVAGSANALTFDEIQGLTYLQVKGSGIANTCPVLESGTTNLKELKAGSYKLENFCIEPTSFTVKEESQFKGGETEFVKTKLMTRLTYTLDAMSGSFKVGSDGSAELKEDDGI 155          
BLAST of FC921311 vs. ExPASy Swiss-Prot
Match: PSBO_EUGGR (Oxygen-evolving enhancer protein 1, chloroplastic OS=Euglena gracilis GN=PSBO PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.324e-22
Identity = 59/129 (45.74%), Postives = 74/129 (57.36%), Query Frame = 2
Query:  299 IAGFALATSALVVSGASAEGV-PKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDS-FAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFXVSPDGTIKFVEKDGL 679
            +AG   A  A ++  A A       LTYDE+QS +Y+EVK +G A  CP +  GV S  + K GKY+   +CLEP+SF VK     K    +F+ TKLMTRLTYTLD I     V  DG+    EKDGL
Sbjct:   71 LAGAGRAMGAALIGAAVAGSANAASLTYDELQSLSYLEVKSSGIAGTCPVLADGVSSKLSLKAGKYEINNWCLEPSSFQVKLPPTEKQQVTEFERTKLMTRLTYTLDAISADLNVGGDGSWTIQEKDGL 199          
BLAST of FC921311 vs. ExPASy Swiss-Prot
Match: PSBO_THEEB (Photosystem II manganese-stabilizing polypeptide OS=Thermosynechococcus elongatus (strain BP-1) GN=psbO PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.568e-15
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = 2
Query:  389 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFXVSPDGTIKFVEKDGL 679
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G   V+ DG++ FVE+DG+
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGI 127          
BLAST of FC921311 vs. ExPASy Swiss-Prot
Match: PSBO_SYNEN (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus naegeli GN=psbO PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.568e-15
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = 2
Query:  389 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFXVSPDGTIKFVEKDGL 679
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G   V+ DG++ FVE+DG+
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGI 127          
BLAST of FC921311 vs. ExPASy Swiss-Prot
Match: PSBO_ANASP (Photosystem II manganese-stabilizing polypeptide OS=Anabaena sp. (strain PCC 7120) GN=psbO PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.264e-14
Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  398 TYMEVKGTGTANQCP----TIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFXVSPDGTIKFVEKDGL 679
            TY +++GTG AN+CP    T  G +   + K   Y  K+ CLEPT+F VK E  NK    +F   KL+TR T T+D++ G    + D ++ FVEKDGL
Sbjct:   34 TYEQIRGTGLANKCPQLTETSRGSIPLDSSK--SYVLKELCLEPTNFFVKEEPANKRQTAEFVAGKLLTRYTSTIDQVSGDLKFNDDSSLTFVEKDGL 129          
BLAST of FC921311 vs. ExPASy Swiss-Prot
Match: PSBO_SYNY3 (Photosystem II manganese-stabilizing polypeptide OS=Synechocystis sp. (strain PCC 6803) GN=psbO PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.720e-12
Identity = 38/96 (39.58%), Postives = 53/96 (55.21%), Query Frame = 2
Query:  398 TYMEVKGTGTANQCPTIDGGV-DSFAFKPG-KYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFXVSPDGTIKFVEKDGL 679
            TY ++  TG AN CP I      +   +P  KY    FC+EP  + VK E VNK    ++   K++TR T +L++I G   V  DGT+ F EKDG+
Sbjct:   35 TYDDIVNTGLANVCPEISSFTRGTIEVEPNTKYFVSDFCMEPQEYFVKEEPVNKRQKAEYVKGKVLTRQTTSLEQIRGSIAVGADGTLTFKEKDGI 130          
BLAST of FC921311 vs. ExPASy Swiss-Prot
Match: PSBO_CYAA5 (Photosystem II manganese-stabilizing polypeptide OS=Cyanothece sp. (strain ATCC 51142) GN=psbO PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 39/99 (39.39%), Postives = 53/99 (53.54%), Query Frame = 2
Query:  389 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFXVSPDGTIKFVEKDGL 679
            Q  TY E+  TG AN+CP I      S   +PG+ Y     CLEP  + VK E VNK    ++   KL+TR T +L++I G   V  DG + F E+ G+
Sbjct:   32 QDLTYDEILNTGLANKCPQISEFTRGSIPIEPGQTYFVDDLCLEPQEYFVKEEPVNKRQEAEYVPGKLLTRYTTSLEQISGKITVDEDGVVTFYEEGGI 130          
BLAST of FC921311 vs. ExPASy Swiss-Prot
Match: PSBO_SYNE7 (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus (strain PCC 7942) GN=psbO PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 37/104 (35.58%), Postives = 57/104 (54.81%), Query Frame = 2
Query:  374 TYDEIQSKTYMEVKGTGTANQCPTI-DGGVDSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFXVSPDGTIKFVEKDGL 679
            T  ++ + TY ++K TG AN+C ++ +    +   + GK Y     CLEP  F VK E  NK    +F   K++TR T +LD++ G   +  DGT+ F EK G+
Sbjct:   26 TAADLGTLTYDQIKDTGLANKCLSLKESARGTIPLEAGKKYALTDLCLEPQEFFVKEEPGNKRQKAEFVPGKVLTRYTSSLDQVYGDLALKADGTVSFTEKGGI 129          
The following BLAST results are available for this feature:
BLAST of FC921311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PSBO_CHLRE3.723e-2546.72Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_EUGGR1.324e-2245.74Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_THEEB1.568e-1542.42Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNEN1.568e-1542.42Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_ANASP2.264e-1442.86Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNY34.720e-1239.58Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_CYAA51.373e-1139.39Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNE75.219e-1135.58Photosystem II manganese-stabilizing polypeptide O... [more]

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Properties
Property NameValue
Genbank descriptionC32103E05EF RVDevelopN Citrus clementina cDNA clone C32103E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921311 ID=FC921311; Name=FC921311; organism=Citrus clementina; type=EST; length=726bp
GGATAAAAACAAGTAATCCTCTGTAAAGAGTTTAGTTTGTTTCTTAGAAG
ATAAAGGGATACTAGCAAGTAACCCACAAGTGGTAGGGAGCAAGATGGCA
GCCTCGTTACAAGCCGCAGCTACACTGATGCAACCCACCAAGGTGGGTGT
GGTACCCGCTCGCAGCAGCAGCCTGCAGCTGAGGTCTTCACAGAGCGTTT
CGAAGGCTTTTGGTGTCGACTCAGCTGGTGCTAGGATCTCTTGCTCTTTG
AATAATGACTTGAAGGATTTGGCTCAGAAATGTGTTGATGCTACCAAGAT
CGCTGGCTTTGCCCTCGCCACTTCTGCTCTCGTCGTTTCGGGAGCAAGTG
CTGAAGGTGTTCCAAAGAGGCTAACCTATGATGAAATCCAGAGCAAGACA
TACATGGAAGTGAAGGGAACCGGAACTGCTAACCAGTGCCCAACCATTGA
TGGCGGAGTTGACTCTTTTGCCTTCAAACCTGGCAAATACCAGGCTAAGA
AGTTCTGCCTAGAACCAACTTCCTTCACTGTCAAGGCTGAGGGTGTCAAC
AAGAATGCCCCACCAGATTTCCAGAACACCAAGCTCATGACCCGCCTTAC
CTACACCCTTGACGAGATTGAGGGACCTTTTNGAGTGTCCCCCGATGGCA
CCATTAAGTTTGTGGAGAAAGATGGATTGACTATGCTGCTGCGACAGTCA
GCTGGCTGGAGCGACGTGTGCCCTTC
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