FC921312
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_VIBHB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=ispF PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.860e-26 Identity = 52/100 (52.00%), Postives = 71/100 (71.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHGFD+H+ P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA+ DIG+ FPD+D KWKGA S +K+ R + E GY +GN D T++ Q Sbjct: 3 RIGHGFDVHKFGGEGPVIIGGVAIPYEQGLIAHSDGDVALHALTDALLGAIAAGDIGRHFPDTDDKWKGADSRELLKDVYRRVKEQGYRLGNADVTIMAQ 102
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PSEE4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas entomophila (strain L48) GN=ispF PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.860e-26 Identity = 51/100 (51.00%), Postives = 75/100 (75.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHG+D+HR G + +GG+ +PH+ G AHSDGDVLLH + DA+LGA L DIG+ FPD+DP++KGA S V ++ V ++D G+++GN+DAT++ Q Sbjct: 2 RIGHGYDVHRFCDGDFITLGGVRIPHKYGLLAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPQFKGADSRVLLRHVVGIVDNKGWKVGNVDATIVAQ 101
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PSEAE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas aeruginosa GN=ispF PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.860e-26 Identity = 50/100 (50.00%), Postives = 74/100 (74.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHG+D+HR G + +GG+ +PH+ G AHSDGDVLLH + DA+LGA L DIG+ FPD+DP++KGA S ++ V ++ E G+++GN+DAT++ Q Sbjct: 2 RIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQ 101
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PSEAB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ispF PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.860e-26 Identity = 50/100 (50.00%), Postives = 74/100 (74.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHG+D+HR G + +GG+ +PH+ G AHSDGDVLLH + DA+LGA L DIG+ FPD+DP++KGA S ++ V ++ E G+++GN+DAT++ Q Sbjct: 2 RIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQ 101
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PSEA8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=ispF PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.860e-26 Identity = 50/100 (50.00%), Postives = 74/100 (74.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHG+D+HR G + +GG+ +PH+ G AHSDGDVLLH + DA+LGA L DIG+ FPD+DP++KGA S ++ V ++ E G+++GN+DAT++ Q Sbjct: 2 RIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQ 101
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_GEOSF (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter sp. (strain FRC-32) GN=ispF PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.860e-26 Identity = 53/100 (53.00%), Postives = 73/100 (73.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHG+D+H+L G LI+GG+++P+ERG HSD DVLLH + DAILGA+G DIG+ FPD+DP +KGA S + + L + GY IGN+DAT++ Q Sbjct: 2 RIGHGYDVHKLVSGRKLILGGVDIPYERGLLGHSDADVLLHAISDAILGAIGEGDIGKHFPDTDPAYKGADSIKLLMHVMGLARDRGYAIGNVDATIVAQ 101
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_ENT38 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Enterobacter sp. (strain 638) GN=ispF PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.860e-26 Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG++FPD+DP +KGA S ++EA R + GY +GN+D T+I Q Sbjct: 2 RIGHGFDVHAFGGVGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_ALISL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Aliivibrio salmonicida (strain LFI1238) GN=ispF PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.860e-26 Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHGFD+H+ P+IIGG++VP+E+G AHSDGDV LH + DA+LGA+ DIG+ FPD+D KWKGA S +++ R + E G E+GN D T+I Q Sbjct: 2 RIGHGFDVHKFGGEGPVIIGGVSVPYEQGLIAHSDGDVALHALCDALLGAIAEGDIGRHFPDTDDKWKGADSRALLRDVYRRVKEKGLELGNADVTIIAQ 101
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_YERPB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=ispF PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.041e-26 Identity = 57/102 (55.88%), Postives = 75/102 (73.53%), Query Frame = 2 Query: 296 RVGHGFDLHRL-EPGY-PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHGFD+H+ E G PLIIGG+ +P+E+G AHSDGDV LH DA+LGA L DIG++FPD+DP +KGA S ++EA R + GY++GNLD T+I Q Sbjct: 2 RIGHGFDVHKFGENGSGPLIIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAYRCILAKGYKLGNLDITIIAQ 103
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_VIBVU (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Vibrio vulnificus GN=ispF PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.041e-26 Identity = 53/100 (53.00%), Postives = 71/100 (71.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHGFD+H+ P+IIGG+ VP+E+G AHSDGDV LH + DA+LGA+ DIG+ FPD+D KWKG S +K+ R + E GY++GN D T+I Q Sbjct: 3 RIGHGFDVHKFGGEGPVIIGGVAVPYEQGLIAHSDGDVALHALSDALLGAIAAGDIGRHFPDTDDKWKGVDSRELLKDVYRRVKEQGYKLGNADVTIIAQ 102 The following BLAST results are available for this feature:
BLAST of FC921312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921312 ID=FC921312; Name=FC921312; organism=Citrus clementina; type=EST; length=675bpback to top |