FC921312

Overview
NameFC921312
Unique NameFC921312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_VIBHB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=ispF PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.860e-26
Identity = 52/100 (52.00%), Postives = 71/100 (71.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H+     P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA+   DIG+ FPD+D KWKGA S   +K+  R + E GY +GN D T++ Q
Sbjct:    3 RIGHGFDVHKFGGEGPVIIGGVAIPYEQGLIAHSDGDVALHALTDALLGAIAAGDIGRHFPDTDDKWKGADSRELLKDVYRRVKEQGYRLGNADVTIMAQ 102
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PSEE4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas entomophila (strain L48) GN=ispF PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.860e-26
Identity = 51/100 (51.00%), Postives = 75/100 (75.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA  L DIG+ FPD+DP++KGA S V ++  V ++D  G+++GN+DAT++ Q
Sbjct:    2 RIGHGYDVHRFCDGDFITLGGVRIPHKYGLLAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPQFKGADSRVLLRHVVGIVDNKGWKVGNVDATIVAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PSEAE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas aeruginosa GN=ispF PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.860e-26
Identity = 50/100 (50.00%), Postives = 74/100 (74.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA  L DIG+ FPD+DP++KGA S   ++  V ++ E G+++GN+DAT++ Q
Sbjct:    2 RIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PSEAB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ispF PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.860e-26
Identity = 50/100 (50.00%), Postives = 74/100 (74.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA  L DIG+ FPD+DP++KGA S   ++  V ++ E G+++GN+DAT++ Q
Sbjct:    2 RIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PSEA8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=ispF PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.860e-26
Identity = 50/100 (50.00%), Postives = 74/100 (74.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA  L DIG+ FPD+DP++KGA S   ++  V ++ E G+++GN+DAT++ Q
Sbjct:    2 RIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_GEOSF (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter sp. (strain FRC-32) GN=ispF PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.860e-26
Identity = 53/100 (53.00%), Postives = 73/100 (73.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHG+D+H+L  G  LI+GG+++P+ERG   HSD DVLLH + DAILGA+G  DIG+ FPD+DP +KGA S   +   + L  + GY IGN+DAT++ Q
Sbjct:    2 RIGHGYDVHKLVSGRKLILGGVDIPYERGLLGHSDADVLLHAISDAILGAIGEGDIGKHFPDTDPAYKGADSIKLLMHVMGLARDRGYAIGNVDATIVAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_ENT38 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Enterobacter sp. (strain 638) GN=ispF PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.860e-26
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q
Sbjct:    2 RIGHGFDVHAFGGVGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_ALISL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Aliivibrio salmonicida (strain LFI1238) GN=ispF PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.860e-26
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H+     P+IIGG++VP+E+G  AHSDGDV LH + DA+LGA+   DIG+ FPD+D KWKGA S   +++  R + E G E+GN D T+I Q
Sbjct:    2 RIGHGFDVHKFGGEGPVIIGGVSVPYEQGLIAHSDGDVALHALCDALLGAIAEGDIGRHFPDTDDKWKGADSRALLRDVYRRVKEKGLELGNADVTIIAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_YERPB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=ispF PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.041e-26
Identity = 57/102 (55.88%), Postives = 75/102 (73.53%), Query Frame = 2 
Query:  296 RVGHGFDLHRL-EPGY-PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H+  E G  PLIIGG+ +P+E+G  AHSDGDV LH   DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY++GNLD T+I Q
Sbjct:    2 RIGHGFDVHKFGENGSGPLIIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAYRCILAKGYKLGNLDITIIAQ 103
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_VIBVU (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Vibrio vulnificus GN=ispF PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.041e-26
Identity = 53/100 (53.00%), Postives = 71/100 (71.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H+     P+IIGG+ VP+E+G  AHSDGDV LH + DA+LGA+   DIG+ FPD+D KWKG  S   +K+  R + E GY++GN D T+I Q
Sbjct:    3 RIGHGFDVHKFGGEGPVIIGGVAVPYEQGLIAHSDGDVALHALSDALLGAIAAGDIGRHFPDTDDKWKGVDSRELLKDVYRRVKEQGYKLGNADVTIIAQ 102
The following BLAST results are available for this feature:
BLAST of FC921312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_VIBHB3.860e-2652.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSEE43.860e-2651.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSEAE3.860e-2650.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSEAB3.860e-2650.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSEA83.860e-2650.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOSF3.860e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ENT383.860e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ALISL3.860e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_YERPB5.041e-2655.882-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_VIBVU5.041e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32103E06EF RVDevelopN Citrus clementina cDNA clone C32103E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921312 ID=FC921312; Name=FC921312; organism=Citrus clementina; type=EST; length=675bp
GGGAGCAGACAGCAGAGCACGAACAGCGTCTCTCCTCTCTTCGTAAAATT
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCATTCCTCTCTAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAGACCA
AAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCT
AGGAGCAGACCCCNACCGTTGTAAT
back to top