FC921312

Overview
NameFC921312
Unique NameFC921312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BACAH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus thuringiensis (strain Al Hakam) GN=ispF PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.865e-29
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 2
Query:  293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQ 102          

HSP 2 Score: 27.7202 bits (60), Expect = 4.865e-29
Identity = 11/27 (40.74%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  571 LGCHADSSRPKLSPYKETIRTNLSELL 651
            L C   + +PK++P+ E++R  +SELL
Sbjct:   95 LDCTIIAQKPKMAPHIESMRKRISELL 121          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BACAC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=ispF PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.865e-29
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 2
Query:  293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQ 102          

HSP 2 Score: 27.7202 bits (60), Expect = 4.865e-29
Identity = 11/27 (40.74%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  571 LGCHADSSRPKLSPYKETIRTNLSELL 651
            L C   + +PK++P+ E++R  +SELL
Sbjct:   95 LDCTIIAQKPKMAPHIESMRKRISELL 121          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BACAA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus anthracis (strain A0248) GN=ispF PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.865e-29
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 2
Query:  293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQ 102          

HSP 2 Score: 27.7202 bits (60), Expect = 4.865e-29
Identity = 11/27 (40.74%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  571 LGCHADSSRPKLSPYKETIRTNLSELL 651
            L C   + +PK++P+ E++R  +SELL
Sbjct:   95 LDCTIIAQKPKMAPHIESMRKRISELL 121          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_ACIBL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Acidobacteria bacterium (strain Ellin345) GN=ispF PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.871e-29
Identity = 58/99 (58.59%), Postives = 71/99 (71.72%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLIL 592
            RVG GFD H    G PL IGG+ +PH  G   HSDGDVLLH + DA+LGA+   DIG  FP SDPKWKGA S VFI+EA+R ++ AGY +GN+D +L+L
Sbjct:    3 RVGLGFDSHEFREGIPLRIGGLTIPHTHGLSGHSDGDVLLHAITDALLGAVAAGDIGAFFPPSDPKWKGANSVVFIEEAMRHIETAGYRVGNVDCSLVL 101          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BACC1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain ATCC 10987) GN=ispF PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.334e-29
Identity = 54/101 (53.47%), Postives = 71/101 (70.30%), Query Frame = 2
Query:  293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            FR+G GFD+H    G PLIIGG+ +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGVTIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQ 102          

HSP 2 Score: 27.7202 bits (60), Expect = 6.334e-29
Identity = 11/27 (40.74%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  571 LGCHADSSRPKLSPYKETIRTNLSELL 651
            L C   + +PK++P+ E++R  +SELL
Sbjct:   95 LDCTIIAQKPKMAPHIESMRKRISELL 121          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BACC4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain B4264) GN=ispF PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.247e-29
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 2
Query:  293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWGFVREQGYELGNLDCTIIAQ 102          

HSP 2 Score: 27.7202 bits (60), Expect = 8.247e-29
Identity = 11/27 (40.74%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  571 LGCHADSSRPKLSPYKETIRTNLSELL 651
            L C   + +PK++P+ E++R  +SELL
Sbjct:   95 LDCTIIAQKPKMAPHIESMRKRISELL 121          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BORA1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bordetella avium (strain 197N) GN=ispF PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.417e-28
Identity = 59/103 (57.28%), Postives = 76/103 (73.79%), Query Frame = 2
Query:  287 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            +PFRVG GFD+H L  G PLIIGG+ + H  G   HSD DVLLH V DAILGA GL DIG+ FPD+DP++KGA S V ++EA+  +D AG+++ N+DAT+  Q
Sbjct:    3 IPFRVGQGFDVHALVTGRPLIIGGVRIEHSHGLLGHSDADVLLHAVTDAILGAAGLGDIGRHFPDTDPRFKGADSRVLLREAMARVDAAGWQVVNVDATVHAQ 105          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_GEOMG (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=ispF PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.822e-28
Identity = 54/100 (54.00%), Postives = 74/100 (74.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHG+D+H L  G  LI+GG++VP+ERG   HSD DVLLH + DAILGAL L DIG+ FPD+DP++KGA S   ++  + L  + GY +GN+DAT++ Q
Sbjct:    2 RIGHGYDVHCLVEGRKLILGGVDVPYERGLLGHSDADVLLHAIADAILGALALGDIGKHFPDTDPQFKGADSRKLLRHVMALAGQKGYVLGNVDATIVAQ 101          

HSP 2 Score: 26.9498 bits (58), Expect = 1.822e-28
Identity = 13/29 (44.83%), Postives = 19/29 (65.52%), Query Frame = 1
Query:  589 SSRPKLSPYKETIRTNLSELLGADPXRCN 675
            + RPKL+P+   +R NL+E L A+  R N
Sbjct:  100 AQRPKLAPFIPEMRANLAEDLIAEIDRIN 128          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PELCD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=ispF PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.367e-28
Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHG+D+H+L     LI+GG+++PH  G   HSD DVLLH + DAILGALG  DIG+ FPD+DP +KG  S   + E +RL +  GY +GNLDAT+I Q
Sbjct:    3 RIGHGYDVHQLVAERKLILGGVDIPHTLGLLGHSDADVLLHAICDAILGALGEGDIGKHFPDTDPAYKGISSIKLLHEVMRLAETKGYRLGNLDATIIAQ 102          

HSP 2 Score: 29.261 bits (64), Expect = 2.367e-28
Identity = 12/29 (41.38%), Postives = 18/29 (62.07%), Query Frame = 1
Query:  589 SSRPKLSPYKETIRTNLSELLGADPXRCN 675
            + RPKL+P+   +R N++E  G D  R N
Sbjct:  101 AQRPKLAPFIGNMRENIAEACGTDVSRIN 129          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BACCN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=ispF PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.370e-28
Identity = 54/101 (53.47%), Postives = 71/101 (70.30%), Query Frame = 2
Query:  293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            FR+G GFD+H    G PLIIGGI +P+E+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPYEKGLLGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQ 102          

HSP 2 Score: 27.7202 bits (60), Expect = 2.370e-28
Identity = 11/27 (40.74%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  571 LGCHADSSRPKLSPYKETIRTNLSELL 651
            L C   + +PK++P+ E++R  +SELL
Sbjct:   95 LDCTIIAQKPKMAPHIESMRKRISELL 121          
The following BLAST results are available for this feature:
BLAST of FC921312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_BACAH4.865e-2954.462-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACAC4.865e-2954.462-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACAA4.865e-2954.462-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ACIBL4.871e-2958.592-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACC16.334e-2953.472-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACC48.247e-2954.462-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BORA11.417e-2857.282-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOMG1.822e-2854.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PELCD2.367e-2854.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACCN2.370e-2853.472-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC32103E06EF RVDevelopN Citrus clementina cDNA clone C32103E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921312 ID=FC921312; Name=FC921312; organism=Citrus clementina; type=EST; length=675bp
GGGAGCAGACAGCAGAGCACGAACAGCGTCTCTCCTCTCTTCGTAAAATT
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCATTCCTCTCTAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAGACCA
AAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCT
AGGAGCAGACCCCNACCGTTGTAAT
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