FC921312
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_CUPTR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=ispF PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 4.009e-28 Identity = 58/105 (55.24%), Postives = 75/105 (71.43%), Query Frame = 2 Query: 287 LPF--RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 +PF RVG G+D+H L PG LI+GG+ +PH+RG HSD D LLH V DA+ GA L DIG+ FPD+D ++ GA S ++EA R + EAGYEIGN+DAT+I Q Sbjct: 2 MPFDIRVGQGYDVHALVPGRKLILGGVEIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHFPDTDAQFAGADSRALLREAARRVREAGYEIGNVDATVIAQ 106 HSP 2 Score: 23.483 bits (49), Expect = 4.009e-28 Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 1 Query: 598 PKLSPYKETIRTNLSELLGADPXRCN 675 PKL+P+ + NL+E L RCN Sbjct: 108 PKLAPHIGAMVANLAEDLAIARGRCN 133
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PECCP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ispF PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.034e-28 Identity = 55/100 (55.00%), Postives = 76/100 (76.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHGFD+H+ PL+IGG+ +P+ +G AHSDGDV+LH V DA+LGA L DIG++FPD+DP +KGA S ++EA R ++E GY++GNLD T+I Q Sbjct: 2 RIGHGFDVHKFGGEGPLVIGGVRIPYTQGLLAHSDGDVVLHAVTDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAWRRINEKGYQLGNLDVTIIAQ 101
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BACLD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=ispF PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 8.866e-28 Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = 2 Query: 293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 FR+G GFD+H+L G PLIIGGI +P+E+G HSD DVLLH + DA LGA+G DIG+ FPD+DP++K A S ++ ++ E GY +GNLD T+I Q Sbjct: 2 FRIGQGFDVHQLVEGRPLIIGGITIPYEKGLLGHSDADVLLHTIADACLGAVGEGDIGKHFPDTDPEFKDADSFKLLRHVWMIVKEKGYTLGNLDCTIIAQ 102 HSP 2 Score: 27.335 bits (59), Expect = 8.866e-28 Identity = 12/35 (34.29%), Postives = 21/35 (60.00%), Query Frame = 1 Query: 571 LGCHADSSRPKLSPYKETIRTNLSELLGADPXRCN 675 L C + +PK++PY E +R ++E L A+ + N Sbjct: 95 LDCTIIAQKPKMAPYIEDMRARIAEGLEAEISQIN 129
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PORG3 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=ispF PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.200e-27 Identity = 53/99 (53.54%), Postives = 71/99 (71.72%), Query Frame = 2 Query: 290 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATL 586 PFR+G GFD+HRL GYPL +GG+ + H +G E HSD DVL+H + DA+LGA L DIG FP SDP++KG S + + A+ L+ GYE+GN+DAT+ Sbjct: 4 PFRIGFGFDVHRLSEGYPLWMGGVRLEHSKGLEGHSDADVLIHAICDALLGAAALRDIGYHFPPSDPQYKGIDSKILLARAMELVRSQGYELGNIDATI 102
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_LARHH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=ispF PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 1.502e-27 Identity = 50/100 (50.00%), Postives = 74/100 (74.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+G G+D+HRL G PL++GG+ +P ++G + HSD D L H + DA+ GA L DIG+ FPD+D ++KGA S V ++EAVR + EAG++I N+D+T+I Q Sbjct: 4 RIGQGWDVHRLVEGRPLVLGGVTIPFDKGLDGHSDADALCHAITDALFGAAALGDIGRHFPDTDLEFKGADSRVLLREAVRRVREAGFDIVNVDSTVIAQ 103 HSP 2 Score: 29.261 bits (64), Expect = 1.502e-27 Identity = 12/26 (46.15%), Postives = 18/26 (69.23%), Query Frame = 1 Query: 598 PKLSPYKETIRTNLSELLGADPXRCN 675 P+L+PY E +R++L+ LG P R N Sbjct: 105 PRLAPYVEAMRSHLAADLGLSPDRVN 130
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_THETN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermoanaerobacter tengcongensis GN=ispF PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.503e-27 Identity = 46/100 (46.00%), Postives = 68/100 (68.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 RVG G+D+HR E G L++GGI +P E+G + HSDGDVL+H ++D ILGA GL DIG+ FPD+D +K S + +K + L+ E Y + N+D ++ + Sbjct: 5 RVGIGYDVHRFEEGKKLMLGGIEIPFEKGLKGHSDGDVLIHALIDGILGAAGLGDIGEHFPDTDVAYKEVDSKILLKRVLELVSE-HYVVNNVDCIVVTE 103 HSP 2 Score: 41.5874 bits (96), Expect = 1.503e-27 Identity = 19/33 (57.58%), Postives = 23/33 (69.70%), Query Frame = 1 Query: 577 CHADSSRPKLSPYKETIRTNLSELLGADPXRCN 675 C + RPKLSPYK+ IRT+L+ELLG R N Sbjct: 98 CIVVTERPKLSPYKDRIRTSLAELLGVSKERVN 130
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_ERWCT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Erwinia carotovora subsp. atroseptica GN=ispF PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.567e-27 Identity = 54/100 (54.00%), Postives = 76/100 (76.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHGFD+H+ PL+IGG+ +P+ +G AHSDGDV+LH V DA+LGA L DIG++FPD+DP +KGA S ++EA R +++ GY++GNLD T+I Q Sbjct: 2 RIGHGFDVHKFGGEGPLVIGGVRIPYTQGLLAHSDGDVVLHAVTDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAWRRINDKGYQLGNLDVTIIAQ 101
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PROMH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Proteus mirabilis (strain HI4320) GN=ispF PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.047e-27 Identity = 55/100 (55.00%), Postives = 74/100 (74.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHG+D+H+ P+IIGG+ +P+E+G AHSDGDV+LH V DAILGA+ + DIG +FPD+DP +KGA S V ++EA + GY IGNLD T+I Q Sbjct: 2 RIGHGYDVHKFGGEGPIIIGGVRIPYEQGLLAHSDGDVVLHAVTDAILGAVAMGDIGTLFPDTDPAYKGADSRVLLREAFSRVMAKGYRIGNLDVTIIAQ 101
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_HAHCH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Hahella chejuensis (strain KCTC 2396) GN=ispF PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.047e-27 Identity = 54/102 (52.94%), Postives = 74/102 (72.55%), Query Frame = 2 Query: 293 FRVGHGFDLHRL-EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 FR+GHGFD+H E G ++IGG+N+PHERG +AHSDGDVLLH + DA+LGA DIG+ FPD+DP + GA S ++ V + + GY+IGN+D T++ Q Sbjct: 4 FRIGHGFDVHAFSETGDLIVIGGVNIPHERGLQAHSDGDVLLHAICDALLGAAAFGDIGKHFPDTDPSFSGADSRNLLRSVVSKLHQKGYKIGNIDGTIVAQ 105
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_GEOUR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter uraniireducens (strain Rf4) GN=ispF PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.549e-27 Identity = 53/100 (53.00%), Postives = 71/100 (71.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHG+D+H+L LI+GG+++P+ERG HSD DVLLH + DAILGA+G DIG+ FPD+DP +KGA S + + L GY IGNLDAT++ Q Sbjct: 2 RIGHGYDVHKLVENRKLILGGVDIPYERGLLGHSDADVLLHAISDAILGAIGEGDIGKHFPDTDPAYKGADSIKLLMHVMALAVGKGYAIGNLDATIVAQ 101 HSP 2 Score: 27.7202 bits (60), Expect = 2.549e-27 Identity = 12/29 (41.38%), Postives = 18/29 (62.07%), Query Frame = 1 Query: 589 SSRPKLSPYKETIRTNLSELLGADPXRCN 675 + RPKL+P+ +R N++ L AD R N Sbjct: 100 AQRPKLAPHIPQMRENIARALKADADRIN 128 The following BLAST results are available for this feature:
BLAST of FC921312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921312 ID=FC921312; Name=FC921312; organism=Citrus clementina; type=EST; length=675bpback to top |