FC921312

Overview
NameFC921312
Unique NameFC921312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10201 contig Ccv1_Contig10201:21..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_CUPTR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=ispF PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 4.009e-28
Identity = 58/105 (55.24%), Postives = 75/105 (71.43%), Query Frame = 2
Query:  287 LPF--RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            +PF  RVG G+D+H L PG  LI+GG+ +PH+RG   HSD D LLH V DA+ GA  L DIG+ FPD+D ++ GA S   ++EA R + EAGYEIGN+DAT+I Q
Sbjct:    2 MPFDIRVGQGYDVHALVPGRKLILGGVEIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHFPDTDAQFAGADSRALLREAARRVREAGYEIGNVDATVIAQ 106          

HSP 2 Score: 23.483 bits (49), Expect = 4.009e-28
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 1
Query:  598 PKLSPYKETIRTNLSELLGADPXRCN 675
            PKL+P+   +  NL+E L     RCN
Sbjct:  108 PKLAPHIGAMVANLAEDLAIARGRCN 133          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PECCP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ispF PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.034e-28
Identity = 55/100 (55.00%), Postives = 76/100 (76.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H+     PL+IGG+ +P+ +G  AHSDGDV+LH V DA+LGA  L DIG++FPD+DP +KGA S   ++EA R ++E GY++GNLD T+I Q
Sbjct:    2 RIGHGFDVHKFGGEGPLVIGGVRIPYTQGLLAHSDGDVVLHAVTDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAWRRINEKGYQLGNLDVTIIAQ 101          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BACLD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=ispF PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.866e-28
Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = 2
Query:  293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            FR+G GFD+H+L  G PLIIGGI +P+E+G   HSD DVLLH + DA LGA+G  DIG+ FPD+DP++K A S   ++    ++ E GY +GNLD T+I Q
Sbjct:    2 FRIGQGFDVHQLVEGRPLIIGGITIPYEKGLLGHSDADVLLHTIADACLGAVGEGDIGKHFPDTDPEFKDADSFKLLRHVWMIVKEKGYTLGNLDCTIIAQ 102          

HSP 2 Score: 27.335 bits (59), Expect = 8.866e-28
Identity = 12/35 (34.29%), Postives = 21/35 (60.00%), Query Frame = 1
Query:  571 LGCHADSSRPKLSPYKETIRTNLSELLGADPXRCN 675
            L C   + +PK++PY E +R  ++E L A+  + N
Sbjct:   95 LDCTIIAQKPKMAPYIEDMRARIAEGLEAEISQIN 129          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PORG3 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=ispF PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.200e-27
Identity = 53/99 (53.54%), Postives = 71/99 (71.72%), Query Frame = 2
Query:  290 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATL 586
            PFR+G GFD+HRL  GYPL +GG+ + H +G E HSD DVL+H + DA+LGA  L DIG  FP SDP++KG  S + +  A+ L+   GYE+GN+DAT+
Sbjct:    4 PFRIGFGFDVHRLSEGYPLWMGGVRLEHSKGLEGHSDADVLIHAICDALLGAAALRDIGYHFPPSDPQYKGIDSKILLARAMELVRSQGYELGNIDATI 102          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_LARHH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=ispF PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.502e-27
Identity = 50/100 (50.00%), Postives = 74/100 (74.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+G G+D+HRL  G PL++GG+ +P ++G + HSD D L H + DA+ GA  L DIG+ FPD+D ++KGA S V ++EAVR + EAG++I N+D+T+I Q
Sbjct:    4 RIGQGWDVHRLVEGRPLVLGGVTIPFDKGLDGHSDADALCHAITDALFGAAALGDIGRHFPDTDLEFKGADSRVLLREAVRRVREAGFDIVNVDSTVIAQ 103          

HSP 2 Score: 29.261 bits (64), Expect = 1.502e-27
Identity = 12/26 (46.15%), Postives = 18/26 (69.23%), Query Frame = 1
Query:  598 PKLSPYKETIRTNLSELLGADPXRCN 675
            P+L+PY E +R++L+  LG  P R N
Sbjct:  105 PRLAPYVEAMRSHLAADLGLSPDRVN 130          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_THETN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermoanaerobacter tengcongensis GN=ispF PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.503e-27
Identity = 46/100 (46.00%), Postives = 68/100 (68.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            RVG G+D+HR E G  L++GGI +P E+G + HSDGDVL+H ++D ILGA GL DIG+ FPD+D  +K   S + +K  + L+ E  Y + N+D  ++ +
Sbjct:    5 RVGIGYDVHRFEEGKKLMLGGIEIPFEKGLKGHSDGDVLIHALIDGILGAAGLGDIGEHFPDTDVAYKEVDSKILLKRVLELVSE-HYVVNNVDCIVVTE 103          

HSP 2 Score: 41.5874 bits (96), Expect = 1.503e-27
Identity = 19/33 (57.58%), Postives = 23/33 (69.70%), Query Frame = 1
Query:  577 CHADSSRPKLSPYKETIRTNLSELLGADPXRCN 675
            C   + RPKLSPYK+ IRT+L+ELLG    R N
Sbjct:   98 CIVVTERPKLSPYKDRIRTSLAELLGVSKERVN 130          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_ERWCT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Erwinia carotovora subsp. atroseptica GN=ispF PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.567e-27
Identity = 54/100 (54.00%), Postives = 76/100 (76.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H+     PL+IGG+ +P+ +G  AHSDGDV+LH V DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +++ GY++GNLD T+I Q
Sbjct:    2 RIGHGFDVHKFGGEGPLVIGGVRIPYTQGLLAHSDGDVVLHAVTDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAWRRINDKGYQLGNLDVTIIAQ 101          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PROMH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Proteus mirabilis (strain HI4320) GN=ispF PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.047e-27
Identity = 55/100 (55.00%), Postives = 74/100 (74.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHG+D+H+     P+IIGG+ +P+E+G  AHSDGDV+LH V DAILGA+ + DIG +FPD+DP +KGA S V ++EA   +   GY IGNLD T+I Q
Sbjct:    2 RIGHGYDVHKFGGEGPIIIGGVRIPYEQGLLAHSDGDVVLHAVTDAILGAVAMGDIGTLFPDTDPAYKGADSRVLLREAFSRVMAKGYRIGNLDVTIIAQ 101          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_HAHCH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Hahella chejuensis (strain KCTC 2396) GN=ispF PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.047e-27
Identity = 54/102 (52.94%), Postives = 74/102 (72.55%), Query Frame = 2
Query:  293 FRVGHGFDLHRL-EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            FR+GHGFD+H   E G  ++IGG+N+PHERG +AHSDGDVLLH + DA+LGA    DIG+ FPD+DP + GA S   ++  V  + + GY+IGN+D T++ Q
Sbjct:    4 FRIGHGFDVHAFSETGDLIVIGGVNIPHERGLQAHSDGDVLLHAICDALLGAAAFGDIGKHFPDTDPSFSGADSRNLLRSVVSKLHQKGYKIGNIDGTIVAQ 105          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_GEOUR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter uraniireducens (strain Rf4) GN=ispF PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.549e-27
Identity = 53/100 (53.00%), Postives = 71/100 (71.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHG+D+H+L     LI+GG+++P+ERG   HSD DVLLH + DAILGA+G  DIG+ FPD+DP +KGA S   +   + L    GY IGNLDAT++ Q
Sbjct:    2 RIGHGYDVHKLVENRKLILGGVDIPYERGLLGHSDADVLLHAISDAILGAIGEGDIGKHFPDTDPAYKGADSIKLLMHVMALAVGKGYAIGNLDATIVAQ 101          

HSP 2 Score: 27.7202 bits (60), Expect = 2.549e-27
Identity = 12/29 (41.38%), Postives = 18/29 (62.07%), Query Frame = 1
Query:  589 SSRPKLSPYKETIRTNLSELLGADPXRCN 675
            + RPKL+P+   +R N++  L AD  R N
Sbjct:  100 AQRPKLAPHIPQMRENIARALKADADRIN 128          
The following BLAST results are available for this feature:
BLAST of FC921312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_CUPTR4.009e-2855.242-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PECCP7.034e-2855.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACLD8.866e-2853.472-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PORG31.200e-2753.542-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_LARHH1.502e-2750.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_THETN1.503e-2746.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ERWCT1.567e-2754.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PROMH2.047e-2755.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_HAHCH2.047e-2752.942-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOUR2.549e-2753.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC32103E06EF RVDevelopN Citrus clementina cDNA clone C32103E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921312 ID=FC921312; Name=FC921312; organism=Citrus clementina; type=EST; length=675bp
GGGAGCAGACAGCAGAGCACGAACAGCGTCTCTCCTCTCTTCGTAAAATT
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCATTCCTCTCTAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAGACCA
AAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCT
AGGAGCAGACCCCNACCGTTGTAAT
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