FC921312

Overview
NameFC921312
Unique NameFC921312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10201 contig Ccv1_Contig10201:21..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PORGI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Porphyromonas gingivalis GN=ispF PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.491e-27
Identity = 52/99 (52.53%), Postives = 70/99 (70.71%), Query Frame = 2
Query:  290 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATL 586
            PFR+G GFD+HRL  GYPL +GG+ + H +G E HSD DVL+H + DA+LGA  L DIG  FP SDP++KG  S + +   + L+   GYE+GN+DAT+
Sbjct:    4 PFRIGFGFDVHRLSEGYPLWMGGVRLEHSKGLEGHSDADVLIHAICDALLGAAALRDIGYHFPPSDPQYKGIDSKILLARVMELVRSQGYELGNIDATI 102          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPDF_DINSH (Bifunctional enzyme ispD/ispF OS=Dinoroseobacter shibae (strain DFL 12) GN=ispDF PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.220e-27
Identity = 52/103 (50.49%), Postives = 69/103 (66.99%), Query Frame = 2
Query:  287 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            +  R G+G+D+HR   G  +I+ G+ VPH+R    HSD DV +H V DAI GALG  DIGQ FP SDP+WKGA S +F++ AV L  E GY I ++D TL+ +
Sbjct:  242 MDIRTGNGYDVHRFGTGDAVILCGVEVPHDRALMGHSDADVGMHAVTDAIYGALGDGDIGQHFPPSDPQWKGAASEIFLRHAVALAAERGYTITHMDCTLVCE 344          

HSP 2 Score: 30.0314 bits (66), Expect = 4.220e-27
Identity = 11/31 (35.48%), Postives = 17/31 (54.84%), Query Frame = 1
Query:  571 LGCHADSSRPKLSPYKETIRTNLSELLGADP 663
            + C     RPK+ PY   ++  +SEL+G  P
Sbjct:  337 MDCTLVCERPKIGPYHAVMKAKMSELMGLQP 367          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SALRD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salinibacter ruber (strain DSM 13855) GN=ispF PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.320e-27
Identity = 53/100 (53.00%), Postives = 69/100 (69.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+G G+D+HRL  G PLI+GG+ VPH+RG   HSD DVLLH V DA+LGA  L D+G  FPD+D KWK A S   ++  V  +  AGY   N+DAT++L+
Sbjct:    2 RIGFGYDVHRLVEGRPLILGGVQVPHDRGLAGHSDADVLLHAVADALLGAAALGDLGAHFPDTDAKWKDADSQALLRRVVERVQHAGYAPHNVDATVLLE 101          

HSP 2 Score: 24.2534 bits (51), Expect = 4.320e-27
Identity = 9/19 (47.37%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  595 RPKLSPYKETIRTNLSELL 651
            RPKL P+ + +RTN++  L
Sbjct:  102 RPKLRPHVDEMRTNIARAL 120          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SERP5 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Serratia proteamaculans (strain 568) GN=ispF PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.559e-27
Identity = 54/100 (54.00%), Postives = 73/100 (73.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H+     PL+IGG+ +P+E+G  AHSDGDV LH   DA+LGA  L DIG++FPD+DP +KGA S V ++EA + +   GY +GNLD T+I Q
Sbjct:    2 RIGHGFDVHKFGGEGPLVIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGADSRVLLREAWKRIRAKGYRLGNLDITIIAQ 101          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SOLUE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Solibacter usitatus (strain Ellin6076) GN=ispF PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.619e-27
Identity = 54/100 (54.00%), Postives = 69/100 (69.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R G G+D+HR+  G  +I+GG+ VP E G E HSD DVL H + DAILGA  L DIG  FPDSDP+WKG  S VF++ A  L  + GY I N+D+T+IL+
Sbjct:    5 RTGLGWDVHRIATGRKMILGGVTVPCEFGLEGHSDADVLAHAITDAILGAAALGDIGMHFPDSDPRWKGCDSLVFLRHARDLATQKGYRIVNVDSTIILE 104          

HSP 2 Score: 26.9498 bits (58), Expect = 5.619e-27
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  595 RPKLSPYKETIRTNLSELLGADPXR 669
            RPKL  +++TIR  L+E L  D  R
Sbjct:  105 RPKLKDFRQTIRERLAETLELDVDR 129          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_THISH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=ispF PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.954e-27
Identity = 51/100 (51.00%), Postives = 73/100 (73.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHG+D+H  + G  +++GG+ +PH +   AHSDGDVL+H + DA+LGA  L DIG+ FPD+DP +KGA S V ++  V L+ E GY +GN+DAT+I Q
Sbjct:    5 RIGHGYDVHAFKAGGHVVLGGVRIPHAKAFAAHSDGDVLIHALCDALLGAAALGDIGRHFPDTDPAYKGADSRVLLRRVVELLHEQGYRVGNVDATIIAQ 104          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SHESH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella sediminis (strain HAW-EB3) GN=ispF PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.954e-27
Identity = 53/100 (53.00%), Postives = 74/100 (74.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H+   G PL++GG+++P+E G  AHSDGDV+LH + DA+LGA+ L DIG+ FPD+D ++KGA S   ++   RL  E GY +GNLD T+I Q
Sbjct:    4 RIGHGFDVHKFGGGSPLLLGGVHIPYETGLIAHSDGDVVLHAISDAVLGAVALGDIGKHFPDTDEEFKGADSRHLLRHCYRLAKEKGYSMGNLDVTIIAQ 103          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_EDWI9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Edwardsiella ictaluri (strain 93-146) GN=ispF PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.954e-27
Identity = 56/100 (56.00%), Postives = 70/100 (70.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+HR     PLIIGG+ + H +G  AHSDGDV LH   DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GNLD TLI Q
Sbjct:    2 RIGHGFDVHRFGGEGPLIIGGVRIAHPQGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAYKGADSRALLREAYRSIRARGYRLGNLDITLIAQ 101          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BACSU (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus subtilis GN=ispF PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.315e-27
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 2
Query:  293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            FR+G GFD+H+L  G PLIIGGI +P+E+G   HSD DVLLH V DA LGA+G  DIG+ FPD+DP++K A S   ++    ++ + GY +GN+D T+I Q
Sbjct:    2 FRIGQGFDVHQLVEGRPLIIGGIEIPYEKGLLGHSDADVLLHTVADACLGAVGEGDIGKHFPDTDPEFKDADSFKLLQHVWGIVKQKGYVLGNIDCTIIAQ 102          

HSP 2 Score: 26.9498 bits (58), Expect = 7.315e-27
Identity = 12/35 (34.29%), Postives = 20/35 (57.14%), Query Frame = 1
Query:  571 LGCHADSSRPKLSPYKETIRTNLSELLGADPXRCN 675
            + C   + +PK+ PY E +R  ++E L AD  + N
Sbjct:   95 IDCTIIAQKPKMLPYIEDMRKRIAEGLEADVSQVN 129          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_ALKMQ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Alkaliphilus metalliredigens (strain QYMF) GN=ispF PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.315e-27
Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQD 598
            RVG G+D+HRL  G  LI+GG+ +PHE+G   HSD DVLLH + DA+LGA+ L DIG+ FPD+D K+KG  S   + E  R++ E  Y   N+DAT+I Q+
Sbjct:    2 RVGIGYDVHRLVEGRKLIVGGVEIPHEKGLLGHSDADVLLHAIKDALLGAVALGDIGKHFPDTDEKYKGESSLYLLNEVGRMLAEKAYVANNIDATIIAQE 102          

HSP 2 Score: 28.4906 bits (62), Expect = 7.315e-27
Identity = 11/29 (37.93%), Postives = 19/29 (65.52%), Query Frame = 1
Query:  589 SSRPKLSPYKETIRTNLSELLGADPXRCN 675
            +  PK++PY E +R N++E+LG    + N
Sbjct:  100 AQEPKMAPYIELMRRNIAEVLGIKVEQVN 128          
The following BLAST results are available for this feature:
BLAST of FC921312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_PORGI3.491e-2752.532-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_DINSH4.220e-2750.49Bifunctional enzyme ispD/ispF OS=Dinoroseobacter s... [more]
ISPF_SALRD4.320e-2753.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SERP54.559e-2754.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SOLUE5.619e-2754.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_THISH5.954e-2751.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHESH5.954e-2753.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_EDWI95.954e-2756.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACSU7.315e-2752.482-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ALKMQ7.315e-2751.492-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC32103E06EF RVDevelopN Citrus clementina cDNA clone C32103E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921312 ID=FC921312; Name=FC921312; organism=Citrus clementina; type=EST; length=675bp
GGGAGCAGACAGCAGAGCACGAACAGCGTCTCTCCTCTCTTCGTAAAATT
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCATTCCTCTCTAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAGACCA
AAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCT
AGGAGCAGACCCCNACCGTTGTAAT
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