FC921312

Overview
NameFC921312
Unique NameFC921312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_CHLCH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Chlorobium chlorochromatii (strain CaD3) GN=ispF PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.408e-19
Identity = 43/100 (43.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+G G D+H    G  L+IGG+ +P   G + HSD DVLLH + DA+LGA  L DIG  FP++  ++K   S + +K   +L+ E GY   N+DA L+L+
Sbjct:    2 RIGIGIDVHPFAAGRKLVIGGVYIPGHDGLDGHSDADVLLHAISDALLGAAALGDIGLHFPNTSAEFKDIDSMILLKHVGKLLAEHGYAPVNVDAMLLLE 101          

HSP 2 Score: 24.6386 bits (52), Expect = 7.408e-19
Identity = 8/19 (42.11%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  598 PKLSPYKETIRTNLSELLG 654
            PK++PY + +R N+++ LG
Sbjct:  103 PKIAPYIQQMRQNIADALG 121          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_LEPBP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=ispF PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.018e-18
Identity = 46/101 (45.54%), Postives = 66/101 (65.35%), Query Frame = 2
Query:  293 FRVGHGFDLHRL--EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLI 589
            FRVG+G D H+L  EP  PL++ G+ +  E     HSD DV+LH V DAILGAL L DIG  FPD+DP++K   S+  I++ + L+ E  +++ N+D T +
Sbjct:    2 FRVGNGIDFHKLIHEPFRPLVLAGVEIKSEFAFLGHSDADVILHAVADAILGALSLGDIGVHFPDTDPQYKNMKSTRIIEKCLELVAEKKFKLINVDCTYV 102          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_LEPBA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=ispF PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.018e-18
Identity = 46/101 (45.54%), Postives = 66/101 (65.35%), Query Frame = 2
Query:  293 FRVGHGFDLHRL--EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLI 589
            FRVG+G D H+L  EP  PL++ G+ +  E     HSD DV+LH V DAILGAL L DIG  FPD+DP++K   S+  I++ + L+ E  +++ N+D T +
Sbjct:    2 FRVGNGIDFHKLIHEPFRPLVLAGVEIKSEFAFLGHSDADVILHAVADAILGALSLGDIGVHFPDTDPQYKNMKSTRIIEKCLELVAEKKFKLINVDCTYV 102          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPDF_DESVV (Bifunctional enzyme ispD/ispF OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=ispDF PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.215e-18
Identity = 41/99 (41.41%), Postives = 61/99 (61.62%), Query Frame = 2
Query:  299 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            VG G+D+HR   G P+ +GG+ +P      AHSDGDVLLH + DA+LG +G  DIG  FPDSD  +  A S++ +   + +  EA   + ++D T++ Q
Sbjct:  239 VGWGYDVHRYGEGRPMKLGGVLIPEGPEVVAHSDGDVLLHALADALLGCIGAGDIGLHFPDSDAAFDNANSAMLLDRVLHMTHEARLRLTHVDLTIVAQ 337          

HSP 2 Score: 26.5646 bits (57), Expect = 1.215e-18
Identity = 10/18 (55.56%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  598 PKLSPYKETIRTNLSELL 651
            PKLSP+++ IR N++ LL
Sbjct:  339 PKLSPWRDKIRANVARLL 356          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPDF_DESVH (Bifunctional enzyme ispD/ispF OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=ispDF PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.215e-18
Identity = 41/99 (41.41%), Postives = 61/99 (61.62%), Query Frame = 2
Query:  299 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            VG G+D+HR   G P+ +GG+ +P      AHSDGDVLLH + DA+LG +G  DIG  FPDSD  +  A S++ +   + +  EA   + ++D T++ Q
Sbjct:  239 VGWGYDVHRYGEGRPMKLGGVLIPEGPEVVAHSDGDVLLHALADALLGCIGAGDIGLHFPDSDAAFDNANSAMLLDRVLHMTHEARLRLTHVDLTIVAQ 337          

HSP 2 Score: 26.5646 bits (57), Expect = 1.215e-18
Identity = 10/18 (55.56%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  598 PKLSPYKETIRTNLSELL 651
            PKLSP+++ IR N++ LL
Sbjct:  339 PKLSPWRDKIRANVARLL 356          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJD (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=ispDF PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.330e-18
Identity = 49/121 (40.50%), Postives = 70/121 (57.85%), Query Frame = 2
Query:  302 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ-----------DQN*AHTRRLSE 631
            G+GFD+H      PL++ G+ +    G +AHSDGDVL H + DAILGA  L DIG+++PD+D K+K A S   +K+A   + E G+E+ N+D  ++ Q             N AHT  L E
Sbjct:  213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAVLGDIGELYPDTDMKFKNANSMELLKQAYDKVREVGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDE 333          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPDF_HELHP (Bifunctional enzyme ispD/ispF OS=Helicobacter hepaticus GN=ispDF PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.581e-18
Identity = 42/99 (42.42%), Postives = 62/99 (62.63%), Query Frame = 2
Query:  299 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            +G+G D+H+ E    + +GG+ +    G +AHSDGDV+LH + DAILGA+G  DIG+ FPD+D  +K A S + + E        GYE+ N D ++I Q
Sbjct:  225 IGNGIDVHQFEKNKQMWLGGVEIESPFGFKAHSDGDVVLHALSDAILGAIGGGDIGEWFPDTDETYKNADSKMMLSEIYTFAQSVGYELYNADISIIAQ 323          

HSP 2 Score: 21.9422 bits (45), Expect = 1.581e-18
Identity = 7/18 (38.89%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  598 PKLSPYKETIRTNLSELL 651
            PK++PYK  +R  ++ +L
Sbjct:  325 PKIAPYKSAMRECIARIL 342          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_MYCTU (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium tuberculosis GN=ispF PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.736e-18
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGN 571
            RVG G D+H +EPG P  + G+  P   GC  HSDGDV +H + DA+L A GL DIG++F   DP+W+G   +  ++  V L+ + GY +GN
Sbjct:    6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGN 97          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_MYCTA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ispF PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.736e-18
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGN 571
            RVG G D+H +EPG P  + G+  P   GC  HSDGDV +H + DA+L A GL DIG++F   DP+W+G   +  ++  V L+ + GY +GN
Sbjct:    6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGN 97          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_MYCBT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=ispF PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.736e-18
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGN 571
            RVG G D+H +EPG P  + G+  P   GC  HSDGDV +H + DA+L A GL DIG++F   DP+W+G   +  ++  V L+ + GY +GN
Sbjct:    6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGN 97          
The following BLAST results are available for this feature:
BLAST of FC921312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_CHLCH7.408e-1943.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_LEPBP1.018e-1845.542-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_LEPBA1.018e-1845.542-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_DESVV1.215e-1841.41Bifunctional enzyme ispD/ispF OS=Desulfovibrio vul... [more]
ISPDF_DESVH1.215e-1841.41Bifunctional enzyme ispD/ispF OS=Desulfovibrio vul... [more]
ISPDF_CAMJD1.330e-1840.50Bifunctional enzyme ispD/ispF OS=Campylobacter jej... [more]
ISPDF_HELHP1.581e-1842.42Bifunctional enzyme ispD/ispF OS=Helicobacter hepa... [more]
ISPF_MYCTU1.736e-1844.572-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCTA1.736e-1844.572-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCBT1.736e-1844.572-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC32103E06EF RVDevelopN Citrus clementina cDNA clone C32103E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921312 ID=FC921312; Name=FC921312; organism=Citrus clementina; type=EST; length=675bp
GGGAGCAGACAGCAGAGCACGAACAGCGTCTCTCCTCTCTTCGTAAAATT
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCATTCCTCTCTAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAGACCA
AAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCT
AGGAGCAGACCCCNACCGTTGTAAT
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