FC921312
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_CHLCH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Chlorobium chlorochromatii (strain CaD3) GN=ispF PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 7.408e-19 Identity = 43/100 (43.00%), Postives = 62/100 (62.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+G G D+H G L+IGG+ +P G + HSD DVLLH + DA+LGA L DIG FP++ ++K S + +K +L+ E GY N+DA L+L+ Sbjct: 2 RIGIGIDVHPFAAGRKLVIGGVYIPGHDGLDGHSDADVLLHAISDALLGAAALGDIGLHFPNTSAEFKDIDSMILLKHVGKLLAEHGYAPVNVDAMLLLE 101 HSP 2 Score: 24.6386 bits (52), Expect = 7.408e-19 Identity = 8/19 (42.11%), Postives = 15/19 (78.95%), Query Frame = 1 Query: 598 PKLSPYKETIRTNLSELLG 654 PK++PY + +R N+++ LG Sbjct: 103 PKIAPYIQQMRQNIADALG 121
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_LEPBP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=ispF PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.018e-18 Identity = 46/101 (45.54%), Postives = 66/101 (65.35%), Query Frame = 2 Query: 293 FRVGHGFDLHRL--EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLI 589 FRVG+G D H+L EP PL++ G+ + E HSD DV+LH V DAILGAL L DIG FPD+DP++K S+ I++ + L+ E +++ N+D T + Sbjct: 2 FRVGNGIDFHKLIHEPFRPLVLAGVEIKSEFAFLGHSDADVILHAVADAILGALSLGDIGVHFPDTDPQYKNMKSTRIIEKCLELVAEKKFKLINVDCTYV 102
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_LEPBA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=ispF PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.018e-18 Identity = 46/101 (45.54%), Postives = 66/101 (65.35%), Query Frame = 2 Query: 293 FRVGHGFDLHRL--EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLI 589 FRVG+G D H+L EP PL++ G+ + E HSD DV+LH V DAILGAL L DIG FPD+DP++K S+ I++ + L+ E +++ N+D T + Sbjct: 2 FRVGNGIDFHKLIHEPFRPLVLAGVEIKSEFAFLGHSDADVILHAVADAILGALSLGDIGVHFPDTDPQYKNMKSTRIIEKCLELVAEKKFKLINVDCTYV 102
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPDF_DESVV (Bifunctional enzyme ispD/ispF OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=ispDF PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.215e-18 Identity = 41/99 (41.41%), Postives = 61/99 (61.62%), Query Frame = 2 Query: 299 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 VG G+D+HR G P+ +GG+ +P AHSDGDVLLH + DA+LG +G DIG FPDSD + A S++ + + + EA + ++D T++ Q Sbjct: 239 VGWGYDVHRYGEGRPMKLGGVLIPEGPEVVAHSDGDVLLHALADALLGCIGAGDIGLHFPDSDAAFDNANSAMLLDRVLHMTHEARLRLTHVDLTIVAQ 337 HSP 2 Score: 26.5646 bits (57), Expect = 1.215e-18 Identity = 10/18 (55.56%), Postives = 15/18 (83.33%), Query Frame = 1 Query: 598 PKLSPYKETIRTNLSELL 651 PKLSP+++ IR N++ LL Sbjct: 339 PKLSPWRDKIRANVARLL 356
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPDF_DESVH (Bifunctional enzyme ispD/ispF OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=ispDF PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.215e-18 Identity = 41/99 (41.41%), Postives = 61/99 (61.62%), Query Frame = 2 Query: 299 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 VG G+D+HR G P+ +GG+ +P AHSDGDVLLH + DA+LG +G DIG FPDSD + A S++ + + + EA + ++D T++ Q Sbjct: 239 VGWGYDVHRYGEGRPMKLGGVLIPEGPEVVAHSDGDVLLHALADALLGCIGAGDIGLHFPDSDAAFDNANSAMLLDRVLHMTHEARLRLTHVDLTIVAQ 337 HSP 2 Score: 26.5646 bits (57), Expect = 1.215e-18 Identity = 10/18 (55.56%), Postives = 15/18 (83.33%), Query Frame = 1 Query: 598 PKLSPYKETIRTNLSELL 651 PKLSP+++ IR N++ LL Sbjct: 339 PKLSPWRDKIRANVARLL 356
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJD (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=ispDF PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.330e-18 Identity = 49/121 (40.50%), Postives = 70/121 (57.85%), Query Frame = 2 Query: 302 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ-----------DQN*AHTRRLSE 631 G+GFD+H PL++ G+ + G +AHSDGDVL H + DAILGA L DIG+++PD+D K+K A S +K+A + E G+E+ N+D ++ Q N AHT L E Sbjct: 213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAVLGDIGELYPDTDMKFKNANSMELLKQAYDKVREVGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDE 333
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPDF_HELHP (Bifunctional enzyme ispD/ispF OS=Helicobacter hepaticus GN=ispDF PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.581e-18 Identity = 42/99 (42.42%), Postives = 62/99 (62.63%), Query Frame = 2 Query: 299 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 +G+G D+H+ E + +GG+ + G +AHSDGDV+LH + DAILGA+G DIG+ FPD+D +K A S + + E GYE+ N D ++I Q Sbjct: 225 IGNGIDVHQFEKNKQMWLGGVEIESPFGFKAHSDGDVVLHALSDAILGAIGGGDIGEWFPDTDETYKNADSKMMLSEIYTFAQSVGYELYNADISIIAQ 323 HSP 2 Score: 21.9422 bits (45), Expect = 1.581e-18 Identity = 7/18 (38.89%), Postives = 13/18 (72.22%), Query Frame = 1 Query: 598 PKLSPYKETIRTNLSELL 651 PK++PYK +R ++ +L Sbjct: 325 PKIAPYKSAMRECIARIL 342
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_MYCTU (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium tuberculosis GN=ispF PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.736e-18 Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGN 571 RVG G D+H +EPG P + G+ P GC HSDGDV +H + DA+L A GL DIG++F DP+W+G + ++ V L+ + GY +GN Sbjct: 6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGN 97
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_MYCTA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ispF PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.736e-18 Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGN 571 RVG G D+H +EPG P + G+ P GC HSDGDV +H + DA+L A GL DIG++F DP+W+G + ++ V L+ + GY +GN Sbjct: 6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGN 97
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_MYCBT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=ispF PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.736e-18 Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGN 571 RVG G D+H +EPG P + G+ P GC HSDGDV +H + DA+L A GL DIG++F DP+W+G + ++ V L+ + GY +GN Sbjct: 6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGN 97 The following BLAST results are available for this feature:
BLAST of FC921312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921312 ID=FC921312; Name=FC921312; organism=Citrus clementina; type=EST; length=675bpback to top |