FC921312
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_ERWT9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ispF PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.732e-26 Identity = 53/100 (53.00%), Postives = 73/100 (73.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHGFD+H PLIIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG++FPD+D +KGA S ++EA+R + + GY +GN+D T+I Q Sbjct: 2 RIGHGFDVHAFGGEGPLIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDEAYKGADSRELLREALRQIAQKGYRVGNVDVTIIAQ 101
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_ECOL5 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ispF PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.732e-26 Identity = 53/100 (53.00%), Postives = 73/100 (73.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV+LH + DA+LGA L DIG++FPD+DP +KGA S ++EA R + GY +GN+D T+I Q Sbjct: 2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVVLHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYALGNVDVTIIAQ 101
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_GEOKA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacillus kaustophilus GN=ispF PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.101e-26 Identity = 52/101 (51.49%), Postives = 69/101 (68.32%), Query Frame = 2 Query: 293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 FR+G GFD+H+L G PLIIGG+ +P+E+G HSD DVLLH V DA LGA+G DIG+ FPD+DP++K A S+ + L + GY + N D T+I Q Sbjct: 2 FRIGQGFDVHQLVEGRPLIIGGVTIPYEKGLLGHSDADVLLHAVADACLGAIGAGDIGRHFPDTDPRFKDADSAELLAHVWALARQEGYRLVNADCTIIAQ 102 HSP 2 Score: 27.335 bits (59), Expect = 2.101e-26 Identity = 12/33 (36.36%), Postives = 20/33 (60.61%), Query Frame = 1 Query: 577 CHADSSRPKLSPYKETIRTNLSELLGADPXRCN 675 C + +PKL+PY E +R ++ LL A+ + N Sbjct: 97 CTIIAQKPKLAPYIEEMRAVIARLLEAERSQVN 129
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_LISIN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Listeria innocua GN=ispF PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.103e-26 Identity = 49/100 (49.00%), Postives = 71/100 (71.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+G G+D+H+L+ LIIGGI +P+E+G HSD DVLLH + DAI+GA+G DIG FPD+D +K A S+ + E R ++ G+++GNLDAT+I + Sbjct: 3 RIGQGYDVHKLDYDRELIIGGIKIPYEKGLLGHSDADVLLHAITDAIIGAIGALDIGHFFPDTDMAYKDADSAELLAEIWRQVEAEGFKLGNLDATIIAE 102 HSP 2 Score: 30.8018 bits (68), Expect = 2.103e-26 Identity = 11/29 (37.93%), Postives = 21/29 (72.41%), Query Frame = 1 Query: 589 SSRPKLSPYKETIRTNLSELLGADPXRCN 675 + +PK++PY E ++ ++ELL A+P + N Sbjct: 101 AEKPKMAPYVELMKRRIAELLHAEPSQVN 129
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BURTA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=ispF PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.263e-26 Identity = 52/103 (50.49%), Postives = 74/103 (71.84%), Query Frame = 2 Query: 287 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 + FR+G G+D+H+L PG PLIIGG+ +P+ERG HSD DVLLH + DA+ GA L DIG+ F D+DP++KGA S ++E + +AG+ I N+D+T+I Q Sbjct: 1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECAARVAQAGFSIRNVDSTIIAQ 103
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SHISS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shigella sonnei (strain Ss046) GN=ispF PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26 Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG++FPD+DP +KGA S ++EA R + GY +GN+D T+I Q Sbjct: 2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SHIFL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shigella flexneri GN=ispF PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26 Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG++FPD+DP +KGA S ++EA R + GY +GN+D T+I Q Sbjct: 2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SHIF8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shigella flexneri serotype 5b (strain 8401) GN=ispF PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26 Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG++FPD+DP +KGA S ++EA R + GY +GN+D T+I Q Sbjct: 2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SHIDS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ispF PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26 Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG++FPD+DP +KGA S ++EA R + GY +GN+D T+I Q Sbjct: 2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SHIBS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shigella boydii serotype 4 (strain Sb227) GN=ispF PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26 Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG++FPD+DP +KGA S ++EA R + GY +GN+D T+I Q Sbjct: 2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101 The following BLAST results are available for this feature:
BLAST of FC921312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921312 ID=FC921312; Name=FC921312; organism=Citrus clementina; type=EST; length=675bpback to top |