FC921312

Overview
NameFC921312
Unique NameFC921312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10201 contig Ccv1_Contig10201:21..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SHIB3 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ispF PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SHEPA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=ispF PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 2 
Query:  287 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            +  R+GHGFD+H+     PLI+GGI VP+E G  AHSDGDV+LH + DAILGA+ L DIG+ FPD+DP +KGA S V ++   +L  + GY + NLD T+I Q
Sbjct:    1 MKIRIGHGFDVHKFGGEPPLILGGITVPYEVGLIAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDPDFKGADSRVLLRHCYKLAMDMGYSLSNLDVTVIAQ 103
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SALTY (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella typhimurium GN=ispF PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SALTI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella typhi GN=ispF PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SALSV (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella schwarzengrund (strain CVM19633) GN=ispF PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SALPK (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella paratyphi A (strain AKU_12601) GN=ispF PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SALPC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella paratyphi C (strain RKS4594) GN=ispF PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SALPB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ispF PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SALPA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella paratyphi A GN=ispF PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SALNS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella newport (strain SL254) GN=ispF PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101
The following BLAST results are available for this feature:
BLAST of FC921312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_SHIB32.955e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHEPA2.955e-2653.402-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALTY2.955e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALTI2.955e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALSV2.955e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALPK2.955e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALPC2.955e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALPB2.955e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALPA2.955e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALNS2.955e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC32103E06EF RVDevelopN Citrus clementina cDNA clone C32103E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921312 ID=FC921312; Name=FC921312; organism=Citrus clementina; type=EST; length=675bp
GGGAGCAGACAGCAGAGCACGAACAGCGTCTCTCCTCTCTTCGTAAAATT
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCATTCCTCTCTAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAGACCA
AAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCT
AGGAGCAGACCCCNACCGTTGTAAT
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