FC921313

Overview
NameFC921313
Unique NameFC921313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig214 contig Ccv1_Contig214:8..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SYNPW (Uroporphyrinogen decarboxylase OS=Synechococcus sp. (strain WH7803) GN=hemE PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.566e-59
Identity = 113/169 (66.86%), Postives = 136/169 (80.47%), Query Frame = 3 
Query:  171 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            P+LL+A RGE VERPPVW+MRQAGRYMK Y+ + +KYPSFRERSEN DL  EIS+QP++ FKPDGVILFSDILTPL GM I FDII+ KGP I DPI T A+VD +   +P ES+P+VG+ L  LR+ V NEAAVLGFVGAP+TL +YVVEG SSK++  IK +AF +P
Sbjct:    6 PLLLRAARGEAVERPPVWMMRQAGRYMKIYRDLRDKYPSFRERSENPDLSYEISMQPFNAFKPDGVILFSDILTPLPGMGIDFDIIESKGPQIGDPIRTMAQVDALHPLNPAESMPFVGEVLGRLRQSVGNEAAVLGFVGAPWTLAAYVVEGKSSKNYAVIKAMAFQEP 174
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SYNY3 (Uroporphyrinogen decarboxylase OS=Synechocystis sp. (strain PCC 6803) GN=hemE PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.046e-59
Identity = 107/169 (63.31%), Postives = 134/169 (79.29%), Query Frame = 3 
Query:  171 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            P LL+  RGE V+RPPVW+MRQAGRYMK Y+ + +KYPSFRERSEN DL +EISLQPW  F+PDGVI+FSDILTPL G+ IPFDII+ KGP+I  PI T A+VDQ+   DPE S+P++   L  LR+EV N++ VLGFVGAP+TL +Y +EG SSK +  IK++AFS+P
Sbjct:    8 PYLLRVARGEVVKRPPVWMMRQAGRYMKVYRDLRDKYPSFRERSENPDLAIEISLQPWQAFQPDGVIMFSDILTPLPGIGIPFDIIESKGPIIDPPIRTQAQVDQLHALDPESSLPFIKTILGTLRKEVGNQSTVLGFVGAPWTLAAYAIEGKSSKDYKVIKQMAFSEP 176
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_CYAP7 (Uroporphyrinogen decarboxylase OS=Cyanothece sp. (strain PCC 7424) GN=hemE PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.490e-59
Identity = 106/169 (62.72%), Postives = 134/169 (79.29%), Query Frame = 3 
Query:  171 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            P LL+A RGE ++RPPVW+MRQAGRYMK Y+ + +KYPSFRERSEN DL +EISLQPW  F+PDGVI+FSDILTPL G+ IPFDII+ KGP+I  PI T  ++D +  FDP+++VP+V   L  LR+EV N++ VLGFVGAP+TL +Y VEG SSK +  IK +AFS+P
Sbjct:    8 PYLLRAARGEVLDRPPVWMMRQAGRYMKVYRDLRDKYPSFRERSENADLAIEISLQPWRAFQPDGVIMFSDILTPLPGIGIPFDIIESKGPIIDPPIRTQQQIDHLHPFDPDQTVPFVKTILKTLRQEVGNQSTVLGFVGAPWTLAAYAVEGKSSKTYSIIKSMAFSEP 176
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_PROM4 (Uroporphyrinogen decarboxylase OS=Prochlorococcus marinus (strain MIT 9211) GN=hemE PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 7.774e-59
Identity = 108/169 (63.91%), Postives = 135/169 (79.88%), Query Frame = 3 
Query:  171 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            P+LL+A RGE+V+RPPVW+MRQAGRYMK Y+ + +KYPSFRERSEN DL  EIS+QP+  FKPDGVILFSDILTPL GM I FDI++ KGP+I DPI  ++++  +R   P ES P+VG+ L  LR+ V NEAAVLGFVGAP+TL +YVVEG SSK++  IK +AF +P
Sbjct:    6 PLLLRAARGENVDRPPVWMMRQAGRYMKVYRDLRDKYPSFRERSENPDLSYEISMQPFRAFKPDGVILFSDILTPLPGMGIDFDIVESKGPLIKDPIRNESQIKTLRALSPSESCPFVGEVLKRLRDSVGNEAAVLGFVGAPWTLAAYVVEGKSSKNYAVIKAMAFQEP 174
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_MICAN (Uroporphyrinogen decarboxylase OS=Microcystis aeruginosa (strain NIES-843) GN=hemE PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.262e-58
Identity = 104/169 (61.54%), Postives = 134/169 (79.29%), Query Frame = 3 
Query:  171 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            P LL+A +GE + RPPVW+MRQAGRYM+ Y+ + +KYPSFRERSEN DL +EISLQPW  F+PDGVI+FSDILTPL+G+ IPFDII+ KGP+I  PI T A+VDQ+   DP++S+P++   L  LR+EV N++ VLGFVGAP+TL +Y VEG  SK +  IK +AFS+P
Sbjct:    8 PYLLRAAKGEILPRPPVWMMRQAGRYMQIYRELRDKYPSFRERSENADLAIEISLQPWRAFQPDGVIMFSDILTPLAGIGIPFDIIESKGPIIDSPIRTQAQVDQLNPLDPDQSLPFIKTILKTLRQEVGNKSTVLGFVGAPWTLAAYAVEGKGSKSYSVIKGMAFSEP 176
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_PROMS (Uroporphyrinogen decarboxylase OS=Prochlorococcus marinus (strain AS9601) GN=hemE PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.123e-57
Identity = 106/169 (62.72%), Postives = 137/169 (81.07%), Query Frame = 3 
Query:  171 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            P+LL A  G+ V RPPVW+MRQAGRYMK Y+ + E+YPSFRERSEN +L  EIS+QP+H FKPDGVILFSDILTPL GM I F+II+ KGP+I DPI T  +V+ +RE +P ES+ +VG+ L+ L+++VNNEA +LGFVGAP+TL +YVVEG SSK++  IK +AF++P
Sbjct:    6 PLLLSAALGKKVNRPPVWMMRQAGRYMKIYRDLRERYPSFRERSENPELSYEISMQPFHAFKPDGVILFSDILTPLPGMGINFEIIESKGPIIEDPIRTLNQVENLRELNPSESLSFVGQVLSSLKKDVNNEATILGFVGAPWTLAAYVVEGKSSKNYSLIKSMAFNEP 174
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_PROM0 (Uroporphyrinogen decarboxylase OS=Prochlorococcus marinus (strain MIT 9301) GN=hemE PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.123e-57
Identity = 107/169 (63.31%), Postives = 136/169 (80.47%), Query Frame = 3 
Query:  171 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            P+LL A  G+ V RPPVW+MRQAGRYMK Y+ + E+YPSFRERSEN +L  EIS+QP+H FKPDGVILFSDILTPL GM I F+II+ KGP+I DPI T  +V+ ++E  P ES+ +VG+ LT L+++VNNEA VLGFVGAP+TL +YVVEG SSK++  IK +AF++P
Sbjct:    6 PLLLSAALGKKVNRPPVWMMRQAGRYMKIYRDLRERYPSFRERSENPELSYEISMQPFHAFKPDGVILFSDILTPLPGMGINFEIIESKGPIIEDPIRTLNQVENLKELSPSESLSFVGEVLTSLKKDVNNEATVLGFVGAPWTLAAYVVEGKSSKNYSLIKSMAFNKP 174
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SYNS3 (Uroporphyrinogen decarboxylase OS=Synechococcus sp. (strain CC9311) GN=hemE PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.915e-57
Identity = 107/169 (63.31%), Postives = 136/169 (80.47%), Query Frame = 3 
Query:  171 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            P+LL+A RGE VERPPVW+MRQAGRYMK Y+ + +++PSFRERSEN DL  EIS+QP+  F+PDGVILFSDILTPL GM I FDI++ KGP I DPI + ++V+ +R   PEES+P+VG+ L  LR  V N+AAVLGFVGAP+TL +YVVEG SSK++  IK++AF +P
Sbjct:    6 PLLLRAARGETVERPPVWMMRQAGRYMKVYRDLRDRHPSFRERSENPDLSYEISMQPFKAFQPDGVILFSDILTPLPGMGIEFDIVESKGPQIGDPIRSLSQVEALRPLQPEESMPFVGEVLGRLRSSVGNQAAVLGFVGAPWTLAAYVVEGKSSKNYAVIKKMAFQEP 174
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_PROM9 (Uroporphyrinogen decarboxylase OS=Prochlorococcus marinus (strain MIT 9312) GN=hemE PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.915e-57
Identity = 105/169 (62.13%), Postives = 137/169 (81.07%), Query Frame = 3 
Query:  171 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            P+LL A  G+ V RPPVW+MRQAGRYMK Y+ + E+YPSFRERSEN +L  EIS+QP+H FKPDGVILFSDILTPL GM I F+II+ KGP+I DPI T ++++ ++E +P ES+ +VG+ L+ L+++VNNEA VLGFVGAP+TL +YVVEG SSK++  IK +AF +P
Sbjct:    6 PLLLSAALGKKVTRPPVWMMRQAGRYMKIYRDLRERYPSFRERSENPELSYEISMQPFHAFKPDGVILFSDILTPLPGMGINFEIIESKGPIIEDPIRTLSQIESLKELNPSESLSFVGQVLSSLKKDVNNEATVLGFVGAPWTLAAYVVEGKSSKNYSLIKSMAFKEP 174
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SYNP6 (Uroporphyrinogen decarboxylase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=hemE PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 106/169 (62.72%), Postives = 130/169 (76.92%), Query Frame = 3 
Query:  171 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            P LL+A RGE ++RPPVW+MRQAGRYMK Y+ + +KYP FRERSE  +L +EISLQP+  FKPDGVILFSDILTPL GM IPFDII+ KGP++  PI T  +V  V + DPEE+ P++   L  LR+EV NEAAVLGF GAP+TL +Y +EG SSK +  IK LAFS+P
Sbjct:    8 PRLLRAARGEVLDRPPVWMMRQAGRYMKVYRDLRDKYPGFRERSETPELAIEISLQPFRAFKPDGVILFSDILTPLPGMGIPFDIIESKGPILEPPIRTAEQVAAVHDLDPEEATPFIRPILETLRQEVGNEAAVLGFAGAPWTLAAYAIEGKSSKTYANIKHLAFSEP 176
The following BLAST results are available for this feature:
BLAST of FC921313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DCUP_SYNPW1.566e-5966.86Uroporphyrinogen decarboxylase OS=Synechococcus sp... [more]
DCUP_SYNY32.046e-5963.31Uroporphyrinogen decarboxylase OS=Synechocystis sp... [more]
DCUP_CYAP73.490e-5962.72Uroporphyrinogen decarboxylase OS=Cyanothece sp. (... [more]
DCUP_PROM47.774e-5963.91Uroporphyrinogen decarboxylase OS=Prochlorococcus ... [more]
DCUP_MICAN2.262e-5861.54Uroporphyrinogen decarboxylase OS=Microcystis aeru... [more]
DCUP_PROMS1.123e-5762.72Uroporphyrinogen decarboxylase OS=Prochlorococcus ... [more]
DCUP_PROM01.123e-5763.31Uroporphyrinogen decarboxylase OS=Prochlorococcus ... [more]
DCUP_SYNS31.915e-5763.31Uroporphyrinogen decarboxylase OS=Synechococcus sp... [more]
DCUP_PROM91.915e-5762.13Uroporphyrinogen decarboxylase OS=Prochlorococcus ... [more]
DCUP_SYNP62.501e-5762.72Uroporphyrinogen decarboxylase OS=Synechococcus sp... [more]

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Properties
Property NameValue
Genbank descriptionC32103E07EF RVDevelopN Citrus clementina cDNA clone C32103E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921313 ID=FC921313; Name=FC921313; organism=Citrus clementina; type=EST; length=678bp
GAAAGTTTCTAAGATCGAATCAAAGGCCCAACACAATGTCCTGCTCTTCA
ATTTCGGCTATTTCAAATTTTCCACTGTATTCCTCTTCTCACTCCAATTC
AAACTCCCGATATGTCCGCTGCGCCGTCGGAGGGACTGTAGCGGAACCGA
AAAATGTTTCTGTTGCCGAACCCATGTTGCTGAAAGCTGTTCGAGGAGAA
GATGTTGAAAGACCTCCAGTTTGGCTTATGAGGCAAGCAGGGAGGTACAT
GAAGAGTTATCAAATCATCTGCGAGAAGTATCCTTCATTTCGTGAAAGAT
CAGAAAATGTTGATCTTGTTGTGGAAATTTCTCTTCAGCCGTGGCATGTT
TTTAAGCCAGATGGTGTCATTTTGTTCTCAGACATTTTAACTCCTCTTTC
TGGGATGAATATACCTTTTGACATTATCAAGGGTAAGGGTCCTGTCATAT
TTGATCCTATAAACACAGATGCAGAAGTTGACCAAGTGAGAGAATTTGAT
CCTGAGGAGTCAGTTCCATATGTTGGGAAAGCATTGACAATCTTGCGAGA
AGAGGTAAACAATGAAGCAGCAGTTCTGGGTTTTGTTGGGGCTCCTTTCA
CCCTGGTGTCATATGTGGTTGAGGGTGGTTCATCGAAGCACTTCNAGCAA
ATAAAGCGACTAGCTTTCTCTCAACCCA
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