FC921313

Overview
NameFC921313
Unique NameFC921313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SHEWM (Uroporphyrinogen decarboxylase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=hemE PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.583e-30
Identity = 66/166 (39.76%), Postives = 102/166 (61.45%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+R PVW+MRQAGRY+  Y+    +   F    +N DL  E++LQP   +  D  ILFSDILT    M +      G+GP    P +T   + ++   DPE+ + YV +A++ +R E+  E  ++GF G+P+TL +Y+VEGGSSK F +IK++A+ +P
Sbjct:   10 LRALLKQPVDRTPVWMMRQAGRYLPEYKATRAEAGDFMSLCKNQDLACEVTLQPLRRYDLDAAILFSDILTIPDAMGLGLYFETGEGPRFQRPTDTIDAIKKLSIPDPEDELGYVMRAVSTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKTFEKIKKMAYEEP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SHESR (Uroporphyrinogen decarboxylase OS=Shewanella sp. (strain MR-7) GN=hemE PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.583e-30
Identity = 65/166 (39.16%), Postives = 104/166 (62.65%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   ++ D  ILFSDILT    M +      G+GP    P +T   + ++   DPE+ + YV KA++ +R E+N +  ++GF G+P+TL +Y+VEGGSSK F +IK++A+++P
Sbjct:   10 LRALLKQPVDMTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNHELACEVTLQPLRRYELDAAILFSDILTVPDAMGLGLYFEAGEGPRFERPTDTIDAIKKLAVPDPEDDLGYVMKAVSTIRRELNGQVPLIGFSGSPWTLATYMVEGGSSKTFEKIKKMAYAEP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SHESM (Uroporphyrinogen decarboxylase OS=Shewanella sp. (strain MR-4) GN=hemE PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.583e-30
Identity = 65/166 (39.16%), Postives = 104/166 (62.65%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   ++ D  ILFSDILT    M +      G+GP    P +T   + ++   DPE+ + YV KA++ +R E+N +  ++GF G+P+TL +Y+VEGGSSK F +IK++A+++P
Sbjct:   10 LRALLKQPVDMTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNHELACEVTLQPLRRYELDAAILFSDILTVPDAMGLGLYFEAGEGPRFERPTDTIDAIKKLAVPDPEDDLGYVMKAVSTIRRELNGQVPLIGFSGSPWTLATYMVEGGSSKTFEKIKKMAYAEP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SHESH (Uroporphyrinogen decarboxylase OS=Shewanella sediminis (strain HAW-EB3) GN=hemE PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.583e-30
Identity = 66/166 (39.76%), Postives = 102/166 (61.45%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+R PVW+MRQAGRY+  Y+    +   F    +N DL  E++LQP   +  D  ILFSDILT    M +      G+GP    P +T   + ++   DPE+ + YV +A++ +R E+  E  ++GF G+P+TL +Y+VEGGSSK F +IK++A+ +P
Sbjct:   10 LRALLKQPVDRTPVWMMRQAGRYLPEYKATRAEAGDFMSLCKNQDLACEVTLQPLRRYDLDAAILFSDILTVPDAMGLGLYFETGEGPRFQRPTDTIDSIKKLCIPDPEDELGYVMRAVSTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKTFEKIKKMAYEEP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SHESA (Uroporphyrinogen decarboxylase OS=Shewanella sp. (strain ANA-3) GN=hemE PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.583e-30
Identity = 65/166 (39.16%), Postives = 104/166 (62.65%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   ++ D  ILFSDILT    M +      G+GP    P +T   + ++   DPE+ + YV KA++ +R E+N +  ++GF G+P+TL +Y+VEGGSSK F +IK++A+++P
Sbjct:   10 LRALLKQPVDMTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNHELACEVTLQPLRRYELDAAILFSDILTVPDAMGLGLYFEAGEGPRFERPTDTIDAIKKLAVPDPEDDLGYVMKAVSTIRRELNGQVPLIGFSGSPWTLATYMVEGGSSKTFEKIKKMAYAEP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SHEPW (Uroporphyrinogen decarboxylase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=hemE PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.583e-30
Identity = 66/166 (39.76%), Postives = 102/166 (61.45%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+R PVW+MRQAGRY+  Y+    +   F    +N DL  E++LQP   +  D  ILFSDILT    M +      G+GP    P +T   + ++   DPE+ + YV +A++ +R E+  E  ++GF G+P+TL +Y+VEGGSSK F +IK++A+ +P
Sbjct:   10 LRALLKQPVDRTPVWMMRQAGRYLPEYKATRAEAGDFMSLCKNQDLACEVTLQPLRRYDLDAAILFSDILTVPDAMGLGLYFETGEGPRFERPTDTIDSIKKLCIPDPEDELGYVMRAVSTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKTFEKIKKMAYEEP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SHEPA (Uroporphyrinogen decarboxylase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=hemE PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.583e-30
Identity = 66/166 (39.76%), Postives = 102/166 (61.45%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+R PVW+MRQAGRY+  Y+    +   F    +N DL  E++LQP   +  D  ILFSDILT    M +      G+GP    P +T   + ++   DPE+ + YV +A++ +R E+  E  ++GF G+P+TL +Y+VEGGSSK F +IK++A+ +P
Sbjct:   10 LRALLKQPVDRTPVWMMRQAGRYLPEYKATRAEAGDFMSLCKNQDLACEVTLQPLRRYDLDAAILFSDILTVPDAMGLGLYFEAGEGPRFERPTDTIDSIKKLCIPDPEDELGYVMRAVSTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFEKIKKMAYEEP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SHEHH (Uroporphyrinogen decarboxylase OS=Shewanella halifaxensis (strain HAW-EB4) GN=hemE PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.583e-30
Identity = 66/166 (39.76%), Postives = 102/166 (61.45%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+R PVW+MRQAGRY+  Y+    +   F    +N DL  E++LQP   +  D  ILFSDILT    M +      G+GP    P +T   + ++   DPE+ + YV +A++ +R E+  E  ++GF G+P+TL +Y+VEGGSSK F +IK++A+ +P
Sbjct:   10 LRALLKQPVDRTPVWMMRQAGRYLPEYKATRAEAGDFMSLCKNQDLACEVTLQPLRRYDLDAAILFSDILTVPDAMGLGLYFETGEGPRFERPTDTIDSIKKLCIPDPEDELGYVMRAVSTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFEKIKKMAYEEP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_LISW6 (Uroporphyrinogen decarboxylase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=hemE PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.583e-30
Identity = 69/172 (40.12%), Postives = 102/172 (59.30%), Query Frame = 3 
Query:  162 VAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            +   + L+A R E V++ PVW MRQAGR    Y+ + EKY  F E +   ++   ++  P   +  D  IL+ DI+TPL GM I  +I  G GPVI +PI T  +VD++  F PE  VPYV   + +L +++  E  ++GF GAPFTL SY++EGG SK++   K   + +P
Sbjct:    4 ITNDLFLRAARKEQVDKIPVWYMRQAGRSQPEYRKLKEKYSLF-EITHQPEICAYVTKLPVDQYGVDAAILYKDIMTPLPGMGIDVEIKSGIGPVIHNPIRTFQDVDKLSIFKPEIEVPYVLDTIKLLADDM-LEVPLIGFAGAPFTLASYMIEGGPSKNYHLTKSFMYREP 173
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_KLEP3 (Uroporphyrinogen decarboxylase OS=Klebsiella pneumoniae (strain 342) GN=hemE PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.583e-30
Identity = 66/166 (39.76%), Postives = 101/166 (60.84%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   +  D  ILFSDILT    M +      G+GP    PI + A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TL +Y+VEGGSSK F  IK++ +++P
Sbjct:   10 LRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTIPDAMGLGLYFEAGEGPRFTSPIKSKADVDKLPIPDPEQELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYAEP 175
The following BLAST results are available for this feature:
BLAST of FC921313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DCUP_SHEWM7.583e-3039.76Uroporphyrinogen decarboxylase OS=Shewanella woody... [more]
DCUP_SHESR7.583e-3039.16Uroporphyrinogen decarboxylase OS=Shewanella sp. (... [more]
DCUP_SHESM7.583e-3039.16Uroporphyrinogen decarboxylase OS=Shewanella sp. (... [more]
DCUP_SHESH7.583e-3039.76Uroporphyrinogen decarboxylase OS=Shewanella sedim... [more]
DCUP_SHESA7.583e-3039.16Uroporphyrinogen decarboxylase OS=Shewanella sp. (... [more]
DCUP_SHEPW7.583e-3039.76Uroporphyrinogen decarboxylase OS=Shewanella piezo... [more]
DCUP_SHEPA7.583e-3039.76Uroporphyrinogen decarboxylase OS=Shewanella peale... [more]
DCUP_SHEHH7.583e-3039.76Uroporphyrinogen decarboxylase OS=Shewanella halif... [more]
DCUP_LISW67.583e-3040.12Uroporphyrinogen decarboxylase OS=Listeria welshim... [more]
DCUP_KLEP37.583e-3039.76Uroporphyrinogen decarboxylase OS=Klebsiella pneum... [more]

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Properties
Property NameValue
Genbank descriptionC32103E07EF RVDevelopN Citrus clementina cDNA clone C32103E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921313 ID=FC921313; Name=FC921313; organism=Citrus clementina; type=EST; length=678bp
GAAAGTTTCTAAGATCGAATCAAAGGCCCAACACAATGTCCTGCTCTTCA
ATTTCGGCTATTTCAAATTTTCCACTGTATTCCTCTTCTCACTCCAATTC
AAACTCCCGATATGTCCGCTGCGCCGTCGGAGGGACTGTAGCGGAACCGA
AAAATGTTTCTGTTGCCGAACCCATGTTGCTGAAAGCTGTTCGAGGAGAA
GATGTTGAAAGACCTCCAGTTTGGCTTATGAGGCAAGCAGGGAGGTACAT
GAAGAGTTATCAAATCATCTGCGAGAAGTATCCTTCATTTCGTGAAAGAT
CAGAAAATGTTGATCTTGTTGTGGAAATTTCTCTTCAGCCGTGGCATGTT
TTTAAGCCAGATGGTGTCATTTTGTTCTCAGACATTTTAACTCCTCTTTC
TGGGATGAATATACCTTTTGACATTATCAAGGGTAAGGGTCCTGTCATAT
TTGATCCTATAAACACAGATGCAGAAGTTGACCAAGTGAGAGAATTTGAT
CCTGAGGAGTCAGTTCCATATGTTGGGAAAGCATTGACAATCTTGCGAGA
AGAGGTAAACAATGAAGCAGCAGTTCTGGGTTTTGTTGGGGCTCCTTTCA
CCCTGGTGTCATATGTGGTTGAGGGTGGTTCATCGAAGCACTTCNAGCAA
ATAAAGCGACTAGCTTTCTCTCAACCCA
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