FC921313

Overview
NameFC921313
Unique NameFC921313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_FLAPJ (Uroporphyrinogen decarboxylase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=hemE PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.583e-30
Identity = 67/172 (38.95%), Postives = 104/172 (60.47%), Query Frame = 3
Query:  162 VAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            +   + LKA++GE V+RPPVW+MRQAGRY+  +  + +KY  F  R +  +L  EI++QP     PD  ILFSDIL     M I   + +  GP + +PI T  +V++V   D  +++ YV  A+ + ++ +N+E  ++GF G+P+T++ Y VEG  SK F + K   FS P
Sbjct:    2 IKNDLFLKALKGETVQRPPVWMMRQAGRYLPEFIALRDKYDFFT-RCQTPELAAEITVQPIRRIAPDAAILFSDILVVPQAMGIEVLMKENVGPFLPNPIRTIQDVERVIVPDVHQTLGYVFDAIKLTKQMLNDEVPLIGFAGSPWTIMCYAVEGQGSKSFDKAKGFCFSHP 172          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_XANCP (Uroporphyrinogen decarboxylase OS=Xanthomonas campestris pv. campestris GN=hemE PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 65/167 (38.92%), Postives = 101/167 (60.48%), Query Frame = 3
Query:  177 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            LL+A+R + V+R PVWLMRQAGRY+  Y+    +  SF   ++N D+  E++LQP   F  D  ILFSDILT    M +    ++G+GP    P+     + ++   D E  + YV  A+ ++R E++    ++GF G+P+TL  Y++EGG SK + +IK +AF+ P
Sbjct:    7 LLRALRRQPVDRTPVWLMRQAGRYLPEYRATRARAGSFLGMAKNPDIACEVTLQPLERFPLDAAILFSDILTIPDAMGLELYFVEGEGPKFRHPVRDADAIHRLGVPDMETELRYVMDAVRLIRRELDGAVPLIGFSGSPWTLACYMIEGGGSKEYARIKAMAFNAP 173          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_XANCB (Uroporphyrinogen decarboxylase OS=Xanthomonas campestris pv. campestris (strain B100) GN=hemE PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 65/167 (38.92%), Postives = 101/167 (60.48%), Query Frame = 3
Query:  177 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            LL+A+R + V+R PVWLMRQAGRY+  Y+    +  SF   ++N D+  E++LQP   F  D  ILFSDILT    M +    ++G+GP    P+     + ++   D E  + YV  A+ ++R E++    ++GF G+P+TL  Y++EGG SK + +IK +AF+ P
Sbjct:    7 LLRALRRQPVDRTPVWLMRQAGRYLPEYRATRARAGSFLGMAKNPDIACEVTLQPLERFPLDAAILFSDILTIPDAMGLELYFVEGEGPKFRHPVRDADAIHRLGVPDMETELRYVMDAVRLIRRELDGAVPLIGFSGSPWTLACYMIEGGGSKEYARIKAMAFNAP 173          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_XANC8 (Uroporphyrinogen decarboxylase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=hemE PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 65/167 (38.92%), Postives = 101/167 (60.48%), Query Frame = 3
Query:  177 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            LL+A+R + V+R PVWLMRQAGRY+  Y+    +  SF   ++N D+  E++LQP   F  D  ILFSDILT    M +    ++G+GP    P+     + ++   D E  + YV  A+ ++R E++    ++GF G+P+TL  Y++EGG SK + +IK +AF+ P
Sbjct:    7 LLRALRRQPVDRTPVWLMRQAGRYLPEYRATRARAGSFLGMAKNPDIACEVTLQPLERFPLDAAILFSDILTIPDAMGLELYFVEGEGPKFRHPVRDADAIHRLGVPDMETELRYVMDAVRLIRRELDGAVPLIGFSGSPWTLACYMIEGGGSKEYARIKAMAFNAP 173          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_STRAW (Uroporphyrinogen decarboxylase OS=Streptomyces avermitilis GN=hemE PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 76/170 (44.71%), Postives = 97/170 (57.06%), Query Frame = 3
Query:  168 EPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            E   LKA R E V   PVW MRQAGR +  Y  + E  P   E     +LV EI+LQP      D  I FSDI+ PL  + I  DI  G GPV+  PI T A++ Q+R+  PE+ V YV +A+ +L  E+  E  ++GF GAPFTL SY+VEGG SK+    K L +  P
Sbjct:   17 ESAFLKACRREPVPHTPVWFMRQAGRSLPEYLKVREGIPML-ESCMRPELVAEITLQPVRRHNVDAAIYFSDIVVPLKAIGIDLDIKPGVGPVVEKPIRTRADLAQLRDLTPED-VSYVTEAIKLLTAEL-GETPLIGFAGAPFTLASYLVEGGPSKNHEHTKALMYGDP 183          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SHEON (Uroporphyrinogen decarboxylase OS=Shewanella oneidensis GN=hemE PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 65/166 (39.16%), Postives = 104/166 (62.65%), Query Frame = 3
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   ++ D  ILFSDILT    M +      G+GP    P +T   + ++   DPE+ + YV KA++ +R E+N +  ++GF G+P+TL +Y+VEGGSSK F +IK++A+++P
Sbjct:   10 LRALLKQPVDMTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNHELACEVTLQPLRRYELDAAILFSDILTVPDAMGLGLYFEAGEGPRFERPTDTIDAIKKLSIPDPEDELGYVMKAVSTIRRELNGQVPLIGFSGSPWTLATYMVEGGSSKTFEKIKKMAYAEP 175          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SHEDO (Uroporphyrinogen decarboxylase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=hemE PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 65/166 (39.16%), Postives = 103/166 (62.05%), Query Frame = 3
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+  PVW+MRQAGRY+  Y+    +   F     N +L  E++LQP   +K D  ILFSDILT    M +     +G+GP    P +T   + ++   DPE+ + YV +A++ +R E+  E  ++GF G+P+TL +Y+VEGGSSK F +IK++A+++P
Sbjct:   10 LRALLKQPVDATPVWMMRQAGRYLPEYKATRAQAGDFMSLCRNAELACEVTLQPLRRYKLDAAILFSDILTVPDAMGLGLYFEEGEGPRFERPTDTVDAIKKLCIPDPEDELGYVMRAVSTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKTFEKIKKMAYAEP 175          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_KLEP7 (Uroporphyrinogen decarboxylase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=hemE PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 65/166 (39.16%), Postives = 101/166 (60.84%), Query Frame = 3
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   +  D  ILFSDILT    M +      G+GP    P+ + A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TL +Y+VEGGSSK F  IK++ +++P
Sbjct:   10 LRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTIPDAMGLGLYFEAGEGPRFTSPVKSKADVDKLPIPDPEQELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYAEP 175          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_ACIBL (Uroporphyrinogen decarboxylase OS=Acidobacteria bacterium (strain Ellin345) GN=hemE PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 64/168 (38.10%), Postives = 102/168 (60.71%), Query Frame = 3
Query:  174 MLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            + ++A + + VER PVW MRQAGRYM  Y+ + EKY S  E  +  D+  E+++        D  I+F+D+L PL  M +PF    G+GPVI  PI   A + ++R  D    + YV +A+  + +   ++  V+GF GAPFTL SY++EGG S+++ ++K+L ++ P
Sbjct:    7 LFVRACKRQPVERTPVWFMRQAGRYMSEYRAVREKY-SLVEICKKPDVAAEVTITAAEALNVDAAIIFADLLLPLEVMGLPFHFSPGEGPVIEVPIRDAAHITRLRT-DRAHDLGYVAEAVKKVSDHFGSKLPVIGFCGAPFTLASYMIEGGGSRNYLEVKKLMYNSP 172          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_IDILO (Uroporphyrinogen decarboxylase OS=Idiomarina loihiensis GN=hemE PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.293e-29
Identity = 64/166 (38.55%), Postives = 100/166 (60.24%), Query Frame = 3
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+R PVW+MRQAGRY+  Y+ +  +   F     N +L  E+++QP   F  D  ILFSDILT    M +      G+GP   DP+ + A +  +   D E+ + YV  A+  +R E+N    ++GF G+P+TL +Y+VEGGS+K+F ++K+L F+ P
Sbjct:   12 LRALAKQPVDRTPVWMMRQAGRYLPEYKEVRGQAGDFMSLCRNTELACEVTMQPLRRFDLDAAILFSDILTIPDAMGLGLYFEAGEGPKFKDPVRSMAAIKNLAVPDMEDELGYVMDAVRAIRRELNGSVPLIGFSGSPWTLATYMVEGGSTKNFSKVKQLMFADP 177          
The following BLAST results are available for this feature:
BLAST of FC921313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DCUP_FLAPJ7.583e-3038.95Uroporphyrinogen decarboxylase OS=Flavobacterium p... [more]
DCUP_XANCP9.903e-3038.92Uroporphyrinogen decarboxylase OS=Xanthomonas camp... [more]
DCUP_XANCB9.903e-3038.92Uroporphyrinogen decarboxylase OS=Xanthomonas camp... [more]
DCUP_XANC89.903e-3038.92Uroporphyrinogen decarboxylase OS=Xanthomonas camp... [more]
DCUP_STRAW9.903e-3044.71Uroporphyrinogen decarboxylase OS=Streptomyces ave... [more]
DCUP_SHEON9.903e-3039.16Uroporphyrinogen decarboxylase OS=Shewanella oneid... [more]
DCUP_SHEDO9.903e-3039.16Uroporphyrinogen decarboxylase OS=Shewanella denit... [more]
DCUP_KLEP79.903e-3039.16Uroporphyrinogen decarboxylase OS=Klebsiella pneum... [more]
DCUP_ACIBL9.903e-3038.10Uroporphyrinogen decarboxylase OS=Acidobacteria ba... [more]
DCUP_IDILO1.293e-2938.55Uroporphyrinogen decarboxylase OS=Idiomarina loihi... [more]

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Properties
Property NameValue
Genbank descriptionC32103E07EF RVDevelopN Citrus clementina cDNA clone C32103E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921313 ID=FC921313; Name=FC921313; organism=Citrus clementina; type=EST; length=678bp
GAAAGTTTCTAAGATCGAATCAAAGGCCCAACACAATGTCCTGCTCTTCA
ATTTCGGCTATTTCAAATTTTCCACTGTATTCCTCTTCTCACTCCAATTC
AAACTCCCGATATGTCCGCTGCGCCGTCGGAGGGACTGTAGCGGAACCGA
AAAATGTTTCTGTTGCCGAACCCATGTTGCTGAAAGCTGTTCGAGGAGAA
GATGTTGAAAGACCTCCAGTTTGGCTTATGAGGCAAGCAGGGAGGTACAT
GAAGAGTTATCAAATCATCTGCGAGAAGTATCCTTCATTTCGTGAAAGAT
CAGAAAATGTTGATCTTGTTGTGGAAATTTCTCTTCAGCCGTGGCATGTT
TTTAAGCCAGATGGTGTCATTTTGTTCTCAGACATTTTAACTCCTCTTTC
TGGGATGAATATACCTTTTGACATTATCAAGGGTAAGGGTCCTGTCATAT
TTGATCCTATAAACACAGATGCAGAAGTTGACCAAGTGAGAGAATTTGAT
CCTGAGGAGTCAGTTCCATATGTTGGGAAAGCATTGACAATCTTGCGAGA
AGAGGTAAACAATGAAGCAGCAGTTCTGGGTTTTGTTGGGGCTCCTTTCA
CCCTGGTGTCATATGTGGTTGAGGGTGGTTCATCGAAGCACTTCNAGCAA
ATAAAGCGACTAGCTTTCTCTCAACCCA
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