FC921313

Overview
NameFC921313
Unique NameFC921313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SHIB3 (Uroporphyrinogen decarboxylase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=hemE PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.206e-29
Identity = 65/166 (39.16%), Postives = 99/166 (59.64%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   +  D  ILFSDILT    M +      G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TL +Y+VEGGSSK F  IK++ ++ P
Sbjct:   10 LRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SHESW (Uroporphyrinogen decarboxylase OS=Shewanella sp. (strain W3-18-1) GN=hemE PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.206e-29
Identity = 65/166 (39.16%), Postives = 103/166 (62.05%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   ++ D  ILFSDILT    M +      G+GP    P +T   + ++   DPE+ + YV KA++ +R E+N    ++GF G+P+TL +Y+VEGGSSK F +IK++A+++P
Sbjct:   10 LRALLKQPVDMTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNHELACEVTLQPLRRYELDAAILFSDILTVPDAMGLGLYFEAGEGPRFERPTDTIDAIKKLSIPDPEDELGYVMKAVSTIRRELNGAVPLIGFSGSPWTLATYMVEGGSSKTFEKIKKMAYAEP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SHEPC (Uroporphyrinogen decarboxylase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=hemE PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.206e-29
Identity = 65/166 (39.16%), Postives = 103/166 (62.05%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   ++ D  ILFSDILT    M +      G+GP    P +T   + ++   DPE+ + YV KA++ +R E+N    ++GF G+P+TL +Y+VEGGSSK F +IK++A+++P
Sbjct:   10 LRALLKQPVDMTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNHELACEVTLQPLRRYELDAAILFSDILTVPDAMGLGLYFEAGEGPRFERPTDTIDAIKKLSIPDPEDELGYVMKAVSTIRRELNGAVPLIGFSGSPWTLATYMVEGGSSKTFEKIKKMAYAEP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_HALHL (Uroporphyrinogen decarboxylase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=hemE PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.206e-29
Identity = 61/167 (36.53%), Postives = 104/167 (62.28%), Query Frame = 3 
Query:  177 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            +L+A + + V+R PVW+MRQAGRY+  Y+ +  +  SF     + +L   +++QP   ++ D  ILFSDILT    M +  + + G+GPV    + T A++D++ +   ++ + YV  A+   R+E+N +  ++GF G+P+TL +Y++EGGSSK F   K L F++P
Sbjct:   11 ILRAFQRQPVDRTPVWMMRQAGRYLAEYREVRAQAGSFMGLCRSPELAARVTMQPLERYELDAAILFSDILTIPEAMGLGLNFVTGEGPVFEHRVKTAADIDRLPQPSAQKELRYVMDAVAACRKELNGQVPLIGFTGSPWTLATYMIEGGSSKTFAASKSLLFNEP 177
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_ECOUT (Uroporphyrinogen decarboxylase OS=Escherichia coli (strain UTI89 / UPEC) GN=hemE PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.206e-29
Identity = 65/166 (39.16%), Postives = 99/166 (59.64%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   +  D  ILFSDILT    M +      G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TL +Y+VEGGSSK F  IK++ ++ P
Sbjct:   10 LRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_ECOSM (Uroporphyrinogen decarboxylase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=hemE PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.206e-29
Identity = 65/166 (39.16%), Postives = 99/166 (59.64%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   +  D  ILFSDILT    M +      G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TL +Y+VEGGSSK F  IK++ ++ P
Sbjct:   10 LRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_ECOSE (Uroporphyrinogen decarboxylase OS=Escherichia coli (strain SE11) GN=hemE PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.206e-29
Identity = 65/166 (39.16%), Postives = 99/166 (59.64%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   +  D  ILFSDILT    M +      G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TL +Y+VEGGSSK F  IK++ ++ P
Sbjct:   10 LRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_ECOLU (Uroporphyrinogen decarboxylase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=hemE PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.206e-29
Identity = 65/166 (39.16%), Postives = 99/166 (59.64%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   +  D  ILFSDILT    M +      G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TL +Y+VEGGSSK F  IK++ ++ P
Sbjct:   10 LRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_ECOLI (Uroporphyrinogen decarboxylase OS=Escherichia coli (strain K12) GN=hemE PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 2.206e-29
Identity = 65/166 (39.16%), Postives = 99/166 (59.64%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   +  D  ILFSDILT    M +      G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TL +Y+VEGGSSK F  IK++ ++ P
Sbjct:   10 LRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_ECOLC (Uroporphyrinogen decarboxylase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=hemE PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.206e-29
Identity = 65/166 (39.16%), Postives = 99/166 (59.64%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   +  D  ILFSDILT    M +      G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TL +Y+VEGGSSK F  IK++ ++ P
Sbjct:   10 LRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADP 175
The following BLAST results are available for this feature:
BLAST of FC921313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DCUP_SHIB32.206e-2939.16Uroporphyrinogen decarboxylase OS=Shigella boydii ... [more]
DCUP_SHESW2.206e-2939.16Uroporphyrinogen decarboxylase OS=Shewanella sp. (... [more]
DCUP_SHEPC2.206e-2939.16Uroporphyrinogen decarboxylase OS=Shewanella putre... [more]
DCUP_HALHL2.206e-2936.53Uroporphyrinogen decarboxylase OS=Halorhodospira h... [more]
DCUP_ECOUT2.206e-2939.16Uroporphyrinogen decarboxylase OS=Escherichia coli... [more]
DCUP_ECOSM2.206e-2939.16Uroporphyrinogen decarboxylase OS=Escherichia coli... [more]
DCUP_ECOSE2.206e-2939.16Uroporphyrinogen decarboxylase OS=Escherichia coli... [more]
DCUP_ECOLU2.206e-2939.16Uroporphyrinogen decarboxylase OS=Escherichia coli... [more]
DCUP_ECOLI2.206e-2939.16Uroporphyrinogen decarboxylase OS=Escherichia coli... [more]
DCUP_ECOLC2.206e-2939.16Uroporphyrinogen decarboxylase OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionC32103E07EF RVDevelopN Citrus clementina cDNA clone C32103E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921313 ID=FC921313; Name=FC921313; organism=Citrus clementina; type=EST; length=678bp
GAAAGTTTCTAAGATCGAATCAAAGGCCCAACACAATGTCCTGCTCTTCA
ATTTCGGCTATTTCAAATTTTCCACTGTATTCCTCTTCTCACTCCAATTC
AAACTCCCGATATGTCCGCTGCGCCGTCGGAGGGACTGTAGCGGAACCGA
AAAATGTTTCTGTTGCCGAACCCATGTTGCTGAAAGCTGTTCGAGGAGAA
GATGTTGAAAGACCTCCAGTTTGGCTTATGAGGCAAGCAGGGAGGTACAT
GAAGAGTTATCAAATCATCTGCGAGAAGTATCCTTCATTTCGTGAAAGAT
CAGAAAATGTTGATCTTGTTGTGGAAATTTCTCTTCAGCCGTGGCATGTT
TTTAAGCCAGATGGTGTCATTTTGTTCTCAGACATTTTAACTCCTCTTTC
TGGGATGAATATACCTTTTGACATTATCAAGGGTAAGGGTCCTGTCATAT
TTGATCCTATAAACACAGATGCAGAAGTTGACCAAGTGAGAGAATTTGAT
CCTGAGGAGTCAGTTCCATATGTTGGGAAAGCATTGACAATCTTGCGAGA
AGAGGTAAACAATGAAGCAGCAGTTCTGGGTTTTGTTGGGGCTCCTTTCA
CCCTGGTGTCATATGTGGTTGAGGGTGGTTCATCGAAGCACTTCNAGCAA
ATAAAGCGACTAGCTTTCTCTCAACCCA
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