FC921313

Overview
NameFC921313
Unique NameFC921313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig214 contig Ccv1_Contig214:8..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SYNE7 (Uroporphyrinogen decarboxylase OS=Synechococcus elongatus (strain PCC 7942) GN=hemE PE=3 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 106/169 (62.72%), Postives = 130/169 (76.92%), Query Frame = 3
Query:  171 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            P LL+A RGE ++RPPVW+MRQAGRYMK Y+ + +KYP FRERSE  +L +EISLQP+  FKPDGVILFSDILTPL GM IPFDII+ KGP++  PI T  +V  V + DPEE+ P++   L  LR+EV NEAAVLGF GAP+TL +Y +EG SSK +  IK LAFS+P
Sbjct:    8 PRLLRAARGEVLDRPPVWMMRQAGRYMKVYRDLRDKYPGFRERSETPELAIEISLQPFRAFKPDGVILFSDILTPLPGMGIPFDIIESKGPILEPPIRTAEQVAAVHDLDPEEATPFIRPILETLRQEVGNEAAVLGFAGAPWTLAAYAIEGKSSKTYANIKHLAFSEP 176          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_PROMA (Uroporphyrinogen decarboxylase OS=Prochlorococcus marinus GN=hemE PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 109/169 (64.50%), Postives = 133/169 (78.70%), Query Frame = 3
Query:  171 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            P+LL+A RGE V RPPVW+MRQAGRYMK Y+ + + +PSFRERSEN DL  EIS+QP+  FKPDGVILFSDILTPL GM I FDI++ KGP+I DPI T  +V  +R  +P+ S+P+VG+ L  LRE V NEAAVLGFVGAP+TL +YVVEG SSK++  IK +AF QP
Sbjct:    6 PLLLRAARGESVNRPPVWMMRQAGRYMKVYRELRDNHPSFRERSENPDLSYEISMQPFREFKPDGVILFSDILTPLPGMGIDFDIVESKGPLINDPIRTLEQVKTLRPLEPQVSLPFVGEVLGRLRESVKNEAAVLGFVGAPWTLAAYVVEGKSSKNYSVIKAMAFQQP 174          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SYNS9 (Uroporphyrinogen decarboxylase OS=Synechococcus sp. (strain CC9902) GN=hemE PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.266e-57
Identity = 109/169 (64.50%), Postives = 134/169 (79.29%), Query Frame = 3
Query:  171 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            P+LL+A RGE VERPPVW+MRQAGRYMK Y+ + +KYPSFRERSEN DL  EIS+QP+  F+PDGVILFSDILTPL GM I FDII+ KGP I DPI +  +V  +R  +P ES+P+VG+ L  LR+ V N+AAVLGFVGAP+TL +YVVEG SSK++  IK +AF +P
Sbjct:    6 PLLLRAARGESVERPPVWMMRQAGRYMKIYRDLRDKYPSFRERSENPDLSYEISMQPFEAFQPDGVILFSDILTPLPGMGIDFDIIESKGPQIGDPIRSMEQVKALRPLNPAESMPFVGEVLGRLRKTVGNQAAVLGFVGAPWTLAAYVVEGKSSKNYAVIKAMAFREP 174          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SYNR3 (Uroporphyrinogen decarboxylase OS=Synechococcus sp. (strain RCC307) GN=hemE PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.571e-57
Identity = 110/174 (63.22%), Postives = 135/174 (77.59%), Query Frame = 3
Query:  156 VSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            +S A P+LL+A RGE VERPPVW+MRQAGRYMK Y+ + +KYPSFRERSEN DL  EIS+QP++ F+PDGVILFSDILTPL GM I FDII+ KGP I DPI   A+V+ +R   P E++P+VG+ L  LR  V N A VLGFVGAP+TL +YVVEG SSK++  IK +AF +P
Sbjct:    1 MSDALPLLLRAARGEQVERPPVWMMRQAGRYMKIYRDLRDKYPSFRERSENPDLSYEISMQPYNAFQPDGVILFSDILTPLPGMGIDFDIIESKGPQINDPIRNLAQVEALRPLVPAETMPFVGEVLGRLRSSVGNNATVLGFVGAPWTLAAYVVEGKSSKNYAVIKAMAFREP 174          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_PROM2 (Uroporphyrinogen decarboxylase OS=Prochlorococcus marinus (strain MIT 9215) GN=hemE PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.241e-56
Identity = 104/169 (61.54%), Postives = 135/169 (79.88%), Query Frame = 3
Query:  171 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            P+LL A  G+ V RPPVW+MRQAGRYMK Y+ + E+YPSFRERSEN +L  EIS+QP+H FKPDGVILFSDILTPL GM I F+II+ KGP+I DPI    +++ ++E +P ES+ +VG+ L+ L+++VNNEA VLGFVGAP+TL +YVVEG SSK++  IK +AF +P
Sbjct:    6 PLLLSAALGKKVNRPPVWMMRQAGRYMKIYRDLRERYPSFRERSENPELSYEISMQPFHAFKPDGVILFSDILTPLPGMGINFEIIESKGPIIEDPIRNLNQIENLKELNPSESLSFVGQVLSSLKKDVNNEATVLGFVGAPWTLAAYVVEGKSSKNYSLIKSMAFKEP 174          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_PROMT (Uroporphyrinogen decarboxylase OS=Prochlorococcus marinus (strain NATL2A) GN=hemE PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.717e-56
Identity = 106/169 (62.72%), Postives = 134/169 (79.29%), Query Frame = 3
Query:  171 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            P+LL+A RGE+VERPPVW+MRQAGRYMK Y+ + + +PSFRERSEN DL  EIS+QP+  F+PDGVILFSDILTPL GM I FDI++ KGP+I DPI +  +V  ++   PEES+ +VG+ L  LRE V N+AAVLGFVGAP+TL +YVVEG SSK++  IK +AF +P
Sbjct:    6 PLLLRAARGENVERPPVWMMRQAGRYMKVYRDLRDNHPSFRERSENPDLSYEISMQPFKAFQPDGVILFSDILTPLPGMGINFDIVESKGPLINDPIRSLKQVKDLKPLQPEESMSFVGEVLGRLRESVGNKAAVLGFVGAPWTLAAYVVEGKSSKNYAVIKAMAFQEP 174          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_PROM1 (Uroporphyrinogen decarboxylase OS=Prochlorococcus marinus (strain NATL1A) GN=hemE PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.051e-55
Identity = 106/169 (62.72%), Postives = 133/169 (78.70%), Query Frame = 3
Query:  171 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            P+LL+A RGE VERPPVW+MRQAGRYMK Y+ + + +PSFRERSEN DL  EIS+QP+  F+PDGVILFSDILTPL GM I FDI++ KGP+I DPI +  +V  ++   PEES+ +VG+ L  LRE V N+AAVLGFVGAP+TL +YVVEG SSK++  IK +AF +P
Sbjct:    6 PLLLRAARGEHVERPPVWMMRQAGRYMKVYRDLRDNHPSFRERSENPDLSYEISMQPFTAFQPDGVILFSDILTPLPGMGINFDIVESKGPLINDPIRSLKQVKDLKPLQPEESMSFVGEVLGRLRESVGNKAAVLGFVGAPWTLAAYVVEGKSSKNYAVIKAMAFQEP 174          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_PROMM (Uroporphyrinogen decarboxylase OS=Prochlorococcus marinus (strain MIT 9313) GN=hemE PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.372e-55
Identity = 103/174 (59.20%), Postives = 138/174 (79.31%), Query Frame = 3
Query:  156 VSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            +S ++P+LL+A RGE VER PVW+MRQAGRYMK Y+ + ++YPSFRERSEN DL  +IS+QP+  F+PDGVILFSDILTPL GM I FDI++ KGP+I  PI + ++++ ++  +P  ++P+VG+ L  LRE V N+AAVLGFVGAP+TL +YVVEG SSK++  IK +AF QP
Sbjct:    1 MSDSQPLLLRAARGESVERTPVWMMRQAGRYMKVYRDLRDRYPSFRERSENPDLSYQISMQPFEAFQPDGVILFSDILTPLPGMGIDFDIVESKGPLIQKPIRSLSQIEALQPLEPNATMPFVGEVLGRLRESVGNKAAVLGFVGAPWTLAAYVVEGKSSKNYAVIKAMAFQQP 174          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_PROM3 (Uroporphyrinogen decarboxylase OS=Prochlorococcus marinus (strain MIT 9303) GN=hemE PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.792e-55
Identity = 103/174 (59.20%), Postives = 137/174 (78.74%), Query Frame = 3
Query:  156 VSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            +S ++P+LL+A RGE VER PVW+MRQAGRYMK Y+ + ++YPSFRERSEN DL  +IS+QP+  F+PDGVILFSDILTPL GM I FDI++ KGP+I  PI + ++++ ++  +P  ++P+VG+ L  LRE V N AAVLGFVGAP+TL +YVVEG SSK++  IK +AF QP
Sbjct:    1 MSDSQPLLLRAARGESVERTPVWMMRQAGRYMKVYRDLRDRYPSFRERSENPDLSYQISMQPFEAFQPDGVILFSDILTPLPGMGIDFDIVESKGPLIQKPIRSLSQIEALQPLEPNATMPFVGEVLGRLRESVGNRAAVLGFVGAPWTLAAYVVEGKSSKNYAVIKAMAFQQP 174          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_ANASP (Uroporphyrinogen decarboxylase OS=Anabaena sp. (strain PCC 7120) GN=hemE PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.341e-55
Identity = 100/174 (57.47%), Postives = 133/174 (76.44%), Query Frame = 3
Query:  156 VSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            V+   P LL+A RGE V+RPPVW+MRQAGRYMK+Y+ + EKYPSFR+RSE  ++ +E+SLQPW  F+PDGVILFSDI+TPL G+ I  DI +GKGP+I  PI T A+++Q+R  +PE ++P++   L  LR+EV N++ VLGFVGAP+TL +Y VEG  SK +  IK +AFS P
Sbjct:    3 VTSTAPHLLRAARGEIVDRPPVWMMRQAGRYMKAYRDLREKYPSFRDRSEIPEVAIEVSLQPWKAFQPDGVILFSDIVTPLPGLGIEMDIAEGKGPIIHAPIRTQAQIEQLRPLEPEAALPFIKTILQALRQEVGNQSTVLGFVGAPWTLAAYAVEGKGSKTYSIIKNMAFSDP 176          
The following BLAST results are available for this feature:
BLAST of FC921313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DCUP_SYNE72.501e-5762.72Uroporphyrinogen decarboxylase OS=Synechococcus el... [more]
DCUP_PROMA2.501e-5764.50Uroporphyrinogen decarboxylase OS=Prochlorococcus ... [more]
DCUP_SYNS93.266e-5764.50Uroporphyrinogen decarboxylase OS=Synechococcus sp... [more]
DCUP_SYNR35.571e-5763.22Uroporphyrinogen decarboxylase OS=Synechococcus sp... [more]
DCUP_PROM21.241e-5661.54Uroporphyrinogen decarboxylase OS=Prochlorococcus ... [more]
DCUP_PROMT4.717e-5662.72Uroporphyrinogen decarboxylase OS=Prochlorococcus ... [more]
DCUP_PROM11.051e-5562.72Uroporphyrinogen decarboxylase OS=Prochlorococcus ... [more]
DCUP_PROMM1.372e-5559.20Uroporphyrinogen decarboxylase OS=Prochlorococcus ... [more]
DCUP_PROM31.792e-5559.20Uroporphyrinogen decarboxylase OS=Prochlorococcus ... [more]
DCUP_ANASP2.341e-5557.47Uroporphyrinogen decarboxylase OS=Anabaena sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionC32103E07EF RVDevelopN Citrus clementina cDNA clone C32103E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921313 ID=FC921313; Name=FC921313; organism=Citrus clementina; type=EST; length=678bp
GAAAGTTTCTAAGATCGAATCAAAGGCCCAACACAATGTCCTGCTCTTCA
ATTTCGGCTATTTCAAATTTTCCACTGTATTCCTCTTCTCACTCCAATTC
AAACTCCCGATATGTCCGCTGCGCCGTCGGAGGGACTGTAGCGGAACCGA
AAAATGTTTCTGTTGCCGAACCCATGTTGCTGAAAGCTGTTCGAGGAGAA
GATGTTGAAAGACCTCCAGTTTGGCTTATGAGGCAAGCAGGGAGGTACAT
GAAGAGTTATCAAATCATCTGCGAGAAGTATCCTTCATTTCGTGAAAGAT
CAGAAAATGTTGATCTTGTTGTGGAAATTTCTCTTCAGCCGTGGCATGTT
TTTAAGCCAGATGGTGTCATTTTGTTCTCAGACATTTTAACTCCTCTTTC
TGGGATGAATATACCTTTTGACATTATCAAGGGTAAGGGTCCTGTCATAT
TTGATCCTATAAACACAGATGCAGAAGTTGACCAAGTGAGAGAATTTGAT
CCTGAGGAGTCAGTTCCATATGTTGGGAAAGCATTGACAATCTTGCGAGA
AGAGGTAAACAATGAAGCAGCAGTTCTGGGTTTTGTTGGGGCTCCTTTCA
CCCTGGTGTCATATGTGGTTGAGGGTGGTTCATCGAAGCACTTCNAGCAA
ATAAAGCGACTAGCTTTCTCTCAACCCA
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