FC921313

Overview
NameFC921313
Unique NameFC921313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_CARHZ (Uroporphyrinogen decarboxylase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=hemE PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.936e-39
Identity = 84/166 (50.60%), Postives = 107/166 (64.46%), Query Frame = 3
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            LKA R E+    PVWLMRQAGRYM  Y  I  KY SF E  +  +L VE++LQP      D  ILF+DIL PL GM I F   + +GPVI +P+ T  +V +VR   PEE VPYV +A+ ILR E+  +  ++GF GAPFTL SY++EGG SK++ Q KRL +  P
Sbjct:    6 LKACRRENTPYTPVWLMRQAGRYMAEYMEIRNKY-SFLEMCKTPELAVEVTLQPVRKLGVDAAILFADILLPLEGMGIGFRFARDEGPVIENPVRTIVDVKKVRVITPEEDVPYVLEAIKILRRELAGKVPLIGFSGAPFTLASYIIEGGGSKNYIQCKRLMWEAP 170          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_THET8 (Uroporphyrinogen decarboxylase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=hemE PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.691e-35
Identity = 72/173 (41.62%), Postives = 111/173 (64.16%), Query Frame = 3
Query:  156 VSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQ 674
            + +   ++L+A RGE   RPPVW MRQAGRY K+Y+ + E+Y +  E  +N ++  E++L P      D  ILF+DI TPL GM +   +++ KGPVI +P+  +  V+ +R   PEE+VP+V + + IL+ E+     ++GF GAPFTL SY+VEGG S+ F ++K L + +
Sbjct:    1 MDLVNDLILRAARGEPTPRPPVWFMRQAGRYQKAYRKLRERY-TLPEIVQNPEVCAEVTLLPVKALGVDAAILFADITTPLYGMGVDLSLVENKGPVIHNPVRDEKGVEALRPLVPEEAVPFVLETIRILKREL--PVPLIGFAGAPFTLASYLVEGGPSRRFLRVKALMYGE 170          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_THET2 (Uroporphyrinogen decarboxylase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=hemE PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.691e-35
Identity = 72/173 (41.62%), Postives = 111/173 (64.16%), Query Frame = 3
Query:  156 VSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQ 674
            + +   ++L+A RGE   RPPVW MRQAGRY K+Y+ + E+Y +  E  +N ++  E++L P      D  ILF+DI TPL GM +   +++ KGPVI +P+  +  V+ +R   PEE+VP+V + + IL+ E+     ++GF GAPFTL SY+VEGG S+ F ++K L + +
Sbjct:    1 MDLVNDLILRAARGEPTPRPPVWFMRQAGRYQKAYRKLRERY-TLPEIVQNPEVCAEVTLLPVKALGVDAAILFADITTPLYGMGVDLSLVENKGPVIHNPVRDEKGVEALRPLVPEEAVPFVLETIRILKREL--PVPLIGFAGAPFTLASYLVEGGPSRRFLRVKALMYGE 170          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_CHLSY (Uroporphyrinogen decarboxylase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=hemE PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.885e-34
Identity = 72/166 (43.37%), Postives = 104/166 (62.65%), Query Frame = 3
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A R + V+R P+WLMRQAGRYM  Y+ I E+Y  F +  +  ++  E++LQP   F  D  I+F+DIL PL G+ +     KG+GPVI +PI +  +V  +R  DP E+V Y   AL +++ E+N    ++GF GAPFTL SY +EGG S+ +   KR  + QP
Sbjct:    6 LRACRRQPVDRTPIWLMRQAGRYMPEYRAIRERY-GFLQMVKTPEVAAEVTLQPVQAFGVDAAIIFADILPPLEGLGLQLTYEKGEGPVIHNPIRSPHDVSVLRSCDPRETVAYTLAALQLVKRELNG-LPLIGFSGAPFTLASYAIEGGGSREYRLTKRFMYEQP 169          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_CHLAA (Uroporphyrinogen decarboxylase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=hemE PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.885e-34
Identity = 72/166 (43.37%), Postives = 104/166 (62.65%), Query Frame = 3
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A R + V+R P+WLMRQAGRYM  Y+ I E+Y  F +  +  ++  E++LQP   F  D  I+F+DIL PL G+ +     KG+GPVI +PI +  +V  +R  DP E+V Y   AL +++ E+N    ++GF GAPFTL SY +EGG S+ +   KR  + QP
Sbjct:    6 LRACRRQPVDRTPIWLMRQAGRYMPEYRAIRERY-GFLQMVKTPEVAAEVTLQPVQAFGVDAAIIFADILPPLEGLGLQLTYEKGEGPVIHNPIRSPHDVSVLRSCDPRETVAYTLAALQLVKRELNG-LPLIGFSGAPFTLASYAIEGGGSREYRLTKRFMYEQP 169          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SORC5 (Uroporphyrinogen decarboxylase OS=Sorangium cellulosum (strain So ce56) GN=hemE PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.627e-34
Identity = 72/166 (43.37%), Postives = 109/166 (65.66%), Query Frame = 3
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A R E  +  PVW MRQAGRYM  Y+ + +KY +  E  +  +L +E++LQP  +   D  ILF+DIL PL  M  PF+  KG+GPVI +P+   A ++++R F+PEE + YV  A+ ++R+E++ +  ++GF GAPFT+ SY+VEGG S  +   K+L +S P
Sbjct:    6 LRACRREPTDVTPVWFMRQAGRYMAEYRELRKKY-TLLEICKTPELALEVTLQPLRLGM-DAAILFADILLPLEPMGAPFEFAKGEGPVIHEPVRDRAGIERLRVFEPEEGLGYVLDAVRLIRKELDGKTPLIGFAGAPFTMASYLVEGGKSSDYRLTKQLMWSDP 169          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_GRAFK (Uroporphyrinogen decarboxylase OS=Gramella forsetii (strain KT0803) GN=hemE PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.296e-33
Identity = 72/172 (41.86%), Postives = 107/172 (62.21%), Query Frame = 3
Query:  162 VAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            +   +LLKA++GE VERPPVW+MRQAGRY+  +  + EKY  F  R    +L  EI++ P     PD  ILFSDIL     MNI  ++  G GP + +PI++  +V+QV   D  E + YV +A+ + ++E+N+E  ++GF G+P+T++ Y V+G  SK F + KR  F  P
Sbjct:    2 IKNDLLLKALKGESVERPPVWMMRQAGRYLPDFMKLKEKYDFFT-RCRTPELATEITVMPIRQIGPDAAILFSDILVVPQAMNIEVEMKPGVGPWLPNPIDSPKKVEQVIVPDVNEELGYVFEAIKMTKQELNDEVPLIGFAGSPWTILCYCVQGQGSKTFDKAKRFCFMNP 172          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_GEOLS (Uroporphyrinogen decarboxylase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=hemE PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 74/166 (44.58%), Postives = 106/166 (63.86%), Query Frame = 3
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L A  G+ V+R PVWLMRQAGRY+  Y  +  +  SF E  +  +L  E+++QP  +   D  ILFSDILTP+  M +  D + G  PV  +P+ T A+V+++R  DPE  VPYV +A+ ILR+E+  +  ++GF GAPFTL  Y+VEG  SK +  IKR+ ++ P
Sbjct:    6 LDACWGKPVDRTPVWLMRQAGRYLPEYMAVRSRC-SFLELCKTPELAAEVTIQPVDILGVDAAILFSDILTPVEPMGLKLDFVPG--PVFENPVRTMADVEKLRIPDPEADVPYVLQAIRILRKELAGKVPLIGFGGAPFTLACYMVEGKGSKDWATIKRMMYAAP 168          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_CHLAD (Uroporphyrinogen decarboxylase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=hemE PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.250e-32
Identity = 70/166 (42.17%), Postives = 102/166 (61.45%), Query Frame = 3
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A R + V+R P+WLMRQAGRYM  Y+ + E+Y  F +  +  ++  E++LQP   F  D  I+F+DIL PL G+ +     KG+GPVI +PI    +V  +   DP E+V Y   A+ +++ E+N    ++GF GAPFTL SY +EGG SK +   KR  + QP
Sbjct:    6 LRACRRQPVDRTPIWLMRQAGRYMPEYRAVRERY-GFLQMVKTPEIAAEVTLQPIAAFGVDAAIIFADILPPLEGLGLRLTYEKGEGPVIHNPIRHPHDVATLHPCDPRETVAYTLDAVRLVKRELNG-LPLIGFSGAPFTLASYAIEGGGSKEYRLTKRFMYEQP 169          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_XYLFA (Uroporphyrinogen decarboxylase OS=Xylella fastidiosa GN=hemE PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.632e-32
Identity = 69/167 (41.32%), Postives = 106/167 (63.47%), Query Frame = 3
Query:  177 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            LL+A++ + V+R P+WLMRQAGRY+  Y+ + +   SF + ++  +L  EI+LQP H F  D  ILFSDIL     M +    I+G+GP +  PI   A + Q+   D E  + YV  A+ ++R+E++N   ++GF G+P+TL  Y++EGGSSK +  IK +AF+ P
Sbjct:    7 LLRALQRDTVDRTPIWLMRQAGRYLPEYRAVRQHAGSFLKMAKTPELACEITLQPLHRFPLDAAILFSDILMIPDAMGLELHFIEGEGPRLGKPIRDAAAITQLAVPDMETELRYVMDAVRLIRKELDNSVPLIGFSGSPWTLACYMIEGGSSKEYAHIKAMAFNAP 173          
The following BLAST results are available for this feature:
BLAST of FC921313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DCUP_CARHZ8.936e-3950.60Uroporphyrinogen decarboxylase OS=Carboxydothermus... [more]
DCUP_THET82.691e-3541.62Uroporphyrinogen decarboxylase OS=Thermus thermoph... [more]
DCUP_THET22.691e-3541.62Uroporphyrinogen decarboxylase OS=Thermus thermoph... [more]
DCUP_CHLSY3.885e-3443.37Uroporphyrinogen decarboxylase OS=Chloroflexus aur... [more]
DCUP_CHLAA3.885e-3443.37Uroporphyrinogen decarboxylase OS=Chloroflexus aur... [more]
DCUP_SORC56.627e-3443.37Uroporphyrinogen decarboxylase OS=Sorangium cellul... [more]
DCUP_GRAFK4.296e-3341.86Uroporphyrinogen decarboxylase OS=Gramella forseti... [more]
DCUP_GEOLS5.610e-3344.58Uroporphyrinogen decarboxylase OS=Geobacter lovley... [more]
DCUP_CHLAD1.250e-3242.17Uroporphyrinogen decarboxylase OS=Chloroflexus agg... [more]
DCUP_XYLFA1.632e-3241.32Uroporphyrinogen decarboxylase OS=Xylella fastidio... [more]

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Properties
Property NameValue
Genbank descriptionC32103E07EF RVDevelopN Citrus clementina cDNA clone C32103E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921313 ID=FC921313; Name=FC921313; organism=Citrus clementina; type=EST; length=678bp
GAAAGTTTCTAAGATCGAATCAAAGGCCCAACACAATGTCCTGCTCTTCA
ATTTCGGCTATTTCAAATTTTCCACTGTATTCCTCTTCTCACTCCAATTC
AAACTCCCGATATGTCCGCTGCGCCGTCGGAGGGACTGTAGCGGAACCGA
AAAATGTTTCTGTTGCCGAACCCATGTTGCTGAAAGCTGTTCGAGGAGAA
GATGTTGAAAGACCTCCAGTTTGGCTTATGAGGCAAGCAGGGAGGTACAT
GAAGAGTTATCAAATCATCTGCGAGAAGTATCCTTCATTTCGTGAAAGAT
CAGAAAATGTTGATCTTGTTGTGGAAATTTCTCTTCAGCCGTGGCATGTT
TTTAAGCCAGATGGTGTCATTTTGTTCTCAGACATTTTAACTCCTCTTTC
TGGGATGAATATACCTTTTGACATTATCAAGGGTAAGGGTCCTGTCATAT
TTGATCCTATAAACACAGATGCAGAAGTTGACCAAGTGAGAGAATTTGAT
CCTGAGGAGTCAGTTCCATATGTTGGGAAAGCATTGACAATCTTGCGAGA
AGAGGTAAACAATGAAGCAGCAGTTCTGGGTTTTGTTGGGGCTCCTTTCA
CCCTGGTGTCATATGTGGTTGAGGGTGGTTCATCGAAGCACTTCNAGCAA
ATAAAGCGACTAGCTTTCTCTCAACCCA
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