FC921313

Overview
NameFC921313
Unique NameFC921313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_CHLCV (Uroporphyrinogen decarboxylase OS=Chlamydophila caviae GN=hemE PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 49/156 (31.41%), Postives = 83/156 (53.21%), Query Frame = 3
Query:  210 RPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            RPPVW +RQ GRYM  Y+ + +   + +    N + + E +L    + K D  ILF+DIL+ L G NI +D   G   + F P       + +   DP+E+  Y+ +A+  L + +  +  ++ F  +PFT+ SY+++GG+SK F +     +  P
Sbjct:   14 RPPVWFLRQVGRYMPQYKEL-KGSQTLKAFFHNTEAITEATLLGPSLLKVDAAILFADILSLLDGFNISYDFSPGP-QISFSPYE-----ELIFTKDPQETFSYLLQAIKNLVKAL--DVPLIAFAASPFTMASYLLDGGASKDFPKTMAFLYQYP 160          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_HYPNA (Uroporphyrinogen decarboxylase OS=Hyphomonas neptunium (strain ATCC 15444) GN=hemE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15
Identity = 50/167 (29.94%), Postives = 85/167 (50.90%), Query Frame = 3
Query:  177 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            LL  + GE  + PPVW+MRQAGR++  Y     +   F +      L  E +LQP   +  DG ILF+DIL  L  M +     KG+GP++ + IN  +++ +V      + +  V + ++ ++  +  +  ++GF G+P+T+  Y +EG          R A  +P
Sbjct:    8 LLAGLSGEVFKVPPVWMMRQAGRHLPEYLETRARSKDFLDFCYTPSLASEATLQPIRRYGMDGAILFADILLILDAMGLKVAFEKGEGPLV-EQINGPSDLARVSPQKAADRLSPVYETVSRVKAALPAQTTLIGFAGSPWTVSLYAIEGRGKTDKSTAWRWAHGRP 173          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_RICCK (Uroporphyrinogen decarboxylase OS=Rickettsia canadensis (strain McKiel) GN=hemE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15
Identity = 48/164 (29.27%), Postives = 87/164 (53.05%), Query Frame = 3
Query:  177 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAF 668
            LL  ++G   ++ PVW MRQAGRY+  Y+ I E   +F +   +V+   E++LQP   +  D  I+FSDIL     +    D  +  GP++        E  +  + D    +  V K +  +++E+ +  +++GF G+P+T++SY++EG   + F   K+  +
Sbjct:    4 LLNPLKGNS-DKIPVWFMRQAGRYLPEYKKIRETIKNFLDFCYDVNKATEVTLQPIRRYHFDAAIIFSDILVLPHALGWEVDFKENIGPILRQ--FRSQEDFKYLQSDTNNKLEKVYKIIKKVKKELPSTTSLIGFAGSPWTVMSYMLEGKGKQDFKTSKKFVY 164          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_RICTY (Uroporphyrinogen decarboxylase OS=Rickettsia typhi GN=hemE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15
Identity = 45/151 (29.80%), Postives = 82/151 (54.30%), Query Frame = 3
Query:  216 PVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAF 668
            P+W MRQAGRY+  Y+ + E   +F +   +V+   E++LQP   +  D  I+FSDIL   S +    D  +  GPV+     +  +  Q  + D    +  V K +  ++E++ +  +++GF G+P+T++SY++EG   + F   K+  +
Sbjct:   15 PIWFMRQAGRYLPEYKKVRETTKNFLDFCFDVNKATEVTLQPIRRYGLDAAIIFSDILVLPSALGWEVDFKENIGPVL-KQFKSQKDF-QYLQRDSNNKLENVFKIIKKVKEKLPSNTSLIGFAGSPWTVMSYMLEGKGKRDFITSKKFVY 163          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_RICFE (Uroporphyrinogen decarboxylase OS=Rickettsia felis GN=hemE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.039e-15
Identity = 44/151 (29.14%), Postives = 82/151 (54.30%), Query Frame = 3
Query:  216 PVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAF 668
            P+W MRQAGRY+  Y+ + EK  +F +   +V+   E++LQP   +  D  I+FSDIL     +    D  +  GP++        E  +  + +P   +  V + +  ++EE+ +  +++GF G+P+T++SY++EG   + F   K+  +
Sbjct:   16 PIWFMRQAGRYLPEYKKVREKTKNFLDFCYDVNKATEVTLQPIKRYGFDAAIIFSDILVLPHALGWEVDFKENIGPILKQ--FKSQEDFKYLQSNPNNKLEKVYEIIKKVKEELPSTTSLIGFAGSPWTVMSYMLEGKGKQDFKTSKKFIY 164          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_RICPR (Uroporphyrinogen decarboxylase OS=Rickettsia prowazekii GN=hemE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 44/151 (29.14%), Postives = 82/151 (54.30%), Query Frame = 3
Query:  216 PVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAF 668
            P+W MRQAGRY+  Y+ + E   +F +   +V+   E++LQP   +  D  I+FSDIL   + +    D  +  GPV+     +  +  Q  + D    +  V K +  ++E++ +  +++GF G+P+T++SY++EG   + F   K+  +
Sbjct:   15 PIWFMRQAGRYLPEYKKVRETTKNFLDFCYDVNKATEVTLQPIRRYGLDAAIIFSDILVLPNALGWEVDFKENIGPVL-KQFKSQKDF-QYLQRDSNNKLEKVYKIIKKVKEKLPSNTSLIGFAGSPWTVMSYMLEGKGKRDFRTSKKFIY 163          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_RICM5 (Uroporphyrinogen decarboxylase OS=Rickettsia massiliae (strain Mtu5) GN=hemE PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 8.999e-15
Identity = 44/164 (26.83%), Postives = 88/164 (53.66%), Query Frame = 3
Query:  177 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAF 668
            ++  ++G D  + P+W MRQAGRY+  Y+ + E   +F +   +V+   E++LQP   +  D  I+FSDIL          D  +  GP++        E  +  + +P + +  V + +  +++E+ +  +++GF G+P+T++SY++EG   + F   K+  +
Sbjct:    4 IINPLKGND-NKIPIWFMRQAGRYLPEYKKVRETTKNFLDFCYDVNKATEVTLQPIKRYGFDAAIIFSDILVLPHAFGWEVDFKENIGPILKQ--FKSQEDFKYLQINPNDKLEKVYEIIKKVKKELPSPTSLIGFAGSPWTVMSYMLEGKGKQDFKTSKKFIY 164          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_NEOSM (Uroporphyrinogen decarboxylase OS=Neorickettsia sennetsu (strain Miyayama) GN=hemE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 52/146 (35.62%), Postives = 76/146 (52.05%), Query Frame = 3
Query:  222 WLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDP-EESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIK 656
            W MRQAGRY+  Y  I  K  +F +  E+ ++  EI+LQP   F  D  I+FSDIL     +    DI K  GPVI + IN    +     +D  EE +      + I R+ +    +++GF G P+T+  Y++EGG  K F + K
Sbjct:   11 WFMRQAGRYLPEYLKI-SKEMTFFQMCESPEIASEITLQPIKRFDLDAAIVFSDILVLPRALGCNIDIKKSTGPVI-ERINNPNWL----TYDAFEEKISPTLNTIAITRKSLPQNKSLIGFAGGPWTVALYIIEGGWDKTFLRTK 150          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_RICRS (Uroporphyrinogen decarboxylase OS=Rickettsia rickettsii (strain Sheila Smith) GN=hemE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 43/164 (26.22%), Postives = 88/164 (53.66%), Query Frame = 3
Query:  177 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAF 668
            ++  ++G + ++ P+W MRQAGRY+  Y+ + E   +F +   +V    E++LQP   +  D  I+FSDIL     +    D  +  GP++        E  +  + +P   +  V + +  +++E+ +  +++GF G+P+T++SY++EG   + F   K+  +
Sbjct:    4 IINPLKGNN-DKVPIWFMRQAGRYLPEYKKVRETTKNFLDFCYDVSKATEVTLQPIKRYGFDAAIIFSDILVLPHALGWEVDFKENIGPILKQ--FKSQEDFKYLQINPNYKLEKVYEIIKKVKKELPSPISLIGFAGSPWTVMSYMLEGKGKQDFKTSKKFIY 164          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_RICRO (Uroporphyrinogen decarboxylase OS=Rickettsia rickettsii (strain Iowa) GN=hemE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 43/164 (26.22%), Postives = 88/164 (53.66%), Query Frame = 3
Query:  177 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAF 668
            ++  ++G + ++ P+W MRQAGRY+  Y+ + E   +F +   +V    E++LQP   +  D  I+FSDIL     +    D  +  GP++        E  +  + +P   +  V + +  +++E+ +  +++GF G+P+T++SY++EG   + F   K+  +
Sbjct:    4 IINPLKGNN-DKVPIWFMRQAGRYLPEYKKVRETTKNFLDFCYDVSKATEVTLQPIKRYGFDAAIIFSDILVLPHALGWEVDFKENIGPILKQ--FKSQEDFKYLQINPNYKLEKVYEIIKKVKKELPSPISLIGFAGSPWTVMSYMLEGKGKQDFKTSKKFIY 164          
The following BLAST results are available for this feature:
BLAST of FC921313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DCUP_CHLCV8.139e-1631.41Uroporphyrinogen decarboxylase OS=Chlamydophila ca... [more]
DCUP_HYPNA1.388e-1529.94Uroporphyrinogen decarboxylase OS=Hyphomonas neptu... [more]
DCUP_RICCK2.368e-1529.27Uroporphyrinogen decarboxylase OS=Rickettsia canad... [more]
DCUP_RICTY3.093e-1529.80Uroporphyrinogen decarboxylase OS=Rickettsia typhi... [more]
DCUP_RICFE4.039e-1529.14Uroporphyrinogen decarboxylase OS=Rickettsia felis... [more]
DCUP_RICPR6.890e-1529.14Uroporphyrinogen decarboxylase OS=Rickettsia prowa... [more]
DCUP_RICM58.999e-1526.83Uroporphyrinogen decarboxylase OS=Rickettsia massi... [more]
DCUP_NEOSM1.535e-1435.62Uroporphyrinogen decarboxylase OS=Neorickettsia se... [more]
DCUP_RICRS4.466e-1426.22Uroporphyrinogen decarboxylase OS=Rickettsia ricke... [more]
DCUP_RICRO4.466e-1426.22Uroporphyrinogen decarboxylase OS=Rickettsia ricke... [more]

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Properties
Property NameValue
Genbank descriptionC32103E07EF RVDevelopN Citrus clementina cDNA clone C32103E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921313 ID=FC921313; Name=FC921313; organism=Citrus clementina; type=EST; length=678bp
GAAAGTTTCTAAGATCGAATCAAAGGCCCAACACAATGTCCTGCTCTTCA
ATTTCGGCTATTTCAAATTTTCCACTGTATTCCTCTTCTCACTCCAATTC
AAACTCCCGATATGTCCGCTGCGCCGTCGGAGGGACTGTAGCGGAACCGA
AAAATGTTTCTGTTGCCGAACCCATGTTGCTGAAAGCTGTTCGAGGAGAA
GATGTTGAAAGACCTCCAGTTTGGCTTATGAGGCAAGCAGGGAGGTACAT
GAAGAGTTATCAAATCATCTGCGAGAAGTATCCTTCATTTCGTGAAAGAT
CAGAAAATGTTGATCTTGTTGTGGAAATTTCTCTTCAGCCGTGGCATGTT
TTTAAGCCAGATGGTGTCATTTTGTTCTCAGACATTTTAACTCCTCTTTC
TGGGATGAATATACCTTTTGACATTATCAAGGGTAAGGGTCCTGTCATAT
TTGATCCTATAAACACAGATGCAGAAGTTGACCAAGTGAGAGAATTTGAT
CCTGAGGAGTCAGTTCCATATGTTGGGAAAGCATTGACAATCTTGCGAGA
AGAGGTAAACAATGAAGCAGCAGTTCTGGGTTTTGTTGGGGCTCCTTTCA
CCCTGGTGTCATATGTGGTTGAGGGTGGTTCATCGAAGCACTTCNAGCAA
ATAAAGCGACTAGCTTTCTCTCAACCCA
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