FC921313

Overview
NameFC921313
Unique NameFC921313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig214 contig Ccv1_Contig214:8..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_MANSM (Uroporphyrinogen decarboxylase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=hemE PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.079e-31
Identity = 68/166 (40.96%), Postives = 101/166 (60.84%), Query Frame = 3
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            LKA+  E V+  PVW+MRQAGRY+  Y+    +   F     N DL  E++LQP   ++ D  ILFSDILT    M +      G+GP    PI T + V+ +   DPE+ + YV  A+  +R E+N E  ++GF G+P+TL +Y+VEGGS+K F +IK++ +++P
Sbjct:   10 LKALLREPVDMTPVWMMRQAGRYLPEYKATRAEAGDFMSLCRNADLACEVTLQPLRRYELDAAILFSDILTIPDAMGLGLTFGAGEGPKFDRPIETKSAVENLPIPDPEQELQYVMNAVRTIRRELNGEVPLIGFSGSPWTLATYMVEGGSTKAFTKIKKMMYAEP 175          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_GEOUR (Uroporphyrinogen decarboxylase OS=Geobacter uraniireducens (strain Rf4) GN=hemE PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.079e-31
Identity = 73/166 (43.98%), Postives = 103/166 (62.05%), Query Frame = 3
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L A  G+ V+R PVWLMRQAGRY+  Y  +  K  +F E  +  +L  E+S+QP  +   D  ILFSDILTP+  M +  D + G  PV   PI T A+V+++R    E+ VPYV + + ILR E+ N+  ++GF GAPFTL  Y+VEG  SK +  +KR+ ++ P
Sbjct:    6 LDACWGKPVDRTPVWLMRQAGRYLPDYMRVRSKC-TFLELCKTPELAAEVSIQPVDILGVDAAILFSDILTPVEPMGMALDFVPG--PVFEHPIRTMADVEKLRIPQMEQDVPYVLETIKILRRELANKVPLIGFGGAPFTLACYMVEGKGSKDWATMKRMMYAAP 168          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_GEOSF (Uroporphyrinogen decarboxylase OS=Geobacter sp. (strain FRC-32) GN=hemE PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.079e-31
Identity = 73/166 (43.98%), Postives = 103/166 (62.05%), Query Frame = 3
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L A  G+ V+R PVWLMRQAGRY+  Y  +  K  +F E  +  +L  E+++QP  +   D  ILFSDILTP+  M +  D + G  PV   PI T A+V+++R    E+ VPYV + + ILR E+ N+  ++GF GAPFTL  Y+VEG  SK +  IKR+ ++ P
Sbjct:    6 LDACWGKPVDRTPVWLMRQAGRYLPDYMRVRSKC-TFLELCKTPELAAEVTIQPVDILGVDAAILFSDILTPVEPMGMALDFVPG--PVFEHPIRTMADVEKLRIPQMEQDVPYVLETIKILRRELANKVPLIGFGGAPFTLACYMVEGKGSKDWATIKRMMYAAP 168          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_DEIRA (Uroporphyrinogen decarboxylase OS=Deinococcus radiodurans GN=hemE PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.079e-31
Identity = 71/167 (42.51%), Postives = 99/167 (59.28%), Query Frame = 3
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEA-AVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            LK  RGE     PVW MRQAGRYM  Y+ +     +  E     DL  EI+LQP      D  ILF+DILTPL  M +  D + G GPVI +PINT  +VD +      E++PY  +++ +L  E+N+    ++GFVGAPFTL SY +EG  S+++ + KR  +++P
Sbjct:    7 LKTARGEQAPYTPVWFMRQAGRYMPEYRAL-RAGKTMLECIRTPDLAAEITLQPIKAMPLDAAILFNDILTPLPTMGLSLDFVGGVGPVIHNPINTPKDVDVLGVPATAETMPYTAESIRLLMPELNSRGIPLIGFVGAPFTLASYAIEGKGSRNYEKTKRFMYAEP 172          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_XYLFM (Uroporphyrinogen decarboxylase OS=Xylella fastidiosa (strain M12) GN=hemE PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.021e-31
Identity = 68/167 (40.72%), Postives = 103/167 (61.68%), Query Frame = 3
Query:  177 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            LL+A+R + V+R P+WLMRQAGRY+  Y+   +   SF + ++  +L  EI+LQP   F  D  ILFSDIL     M +    I+G+GP +  PI   A + Q+   D E  + YV  A+ ++R+E++N   ++GF G+P+TL  Y++EGG SK +  IK +AF+ P
Sbjct:    7 LLRALRRDTVDRTPIWLMRQAGRYLPEYRAARQHAGSFLKMAKTPELACEITLQPLRRFPLDAAILFSDILMIPDAMGLELHFIEGEGPRLGKPIRDAAAITQLAVPDMETELRYVMDAVRLIRKELDNSVPLIGFSGSPWTLACYMIEGGGSKEYAHIKAMAFNAP 173          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_VIBPA (Uroporphyrinogen decarboxylase OS=Vibrio parahaemolyticus GN=hemE PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.021e-31
Identity = 67/166 (40.36%), Postives = 104/166 (62.65%), Query Frame = 3
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  E V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   F  D  ILFSDILT    M +      G+GPV  +PI   A+V+++   DPE  + YV  A+  +R+++N +  ++GF G+P+TL +Y+VEGGSSK F +IK++ +++P
Sbjct:   10 LRALLKEPVDYTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELASEVTLQPLRRFPLDAAILFSDILTIPDAMGLGLRFAAGEGPVFDNPITCKADVEKIGLPDPEGELQYVMNAVRQIRKDLNGDVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYAEP 175          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_SERP5 (Uroporphyrinogen decarboxylase OS=Serratia proteamaculans (strain 568) GN=hemE PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.021e-31
Identity = 67/166 (40.36%), Postives = 102/166 (61.45%), Query Frame = 3
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   F  D  ILFSDILT    M +      G+GP    PI + A+VD++  FDPE  + YV  A+  +R E+  E  ++GF G+P+TL +Y+VEGGSSK F ++K++ +++P
Sbjct:   10 LRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRFPLDAAILFSDILTIPDAMGLGLYFETGEGPRFSSPITSRADVDKLPAFDPEVELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTKLKKMMYAEP 175          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_METCA (Uroporphyrinogen decarboxylase OS=Methylococcus capsulatus GN=hemE PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.021e-31
Identity = 63/166 (37.95%), Postives = 107/166 (64.46%), Query Frame = 3
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            ++A+  + VER PVW+MRQAGRY+  Y+ + E+  SF     + +L  E++LQP   ++ D  ILFSDILT    M +  + ++G+GP   +PI   A++ ++   DPE  + YV  A+ ++++ + + A ++GF G+P+TL +Y+VEGGSS+ F ++K L + +P
Sbjct:    6 IRALLRQPVERTPVWMMRQAGRYLPEYREVRERAGSFMNLCTSPELACEVTLQPLERYRLDAAILFSDILTVPDAMGLGLEFVEGEGPRFRNPIRGAADIHRLGVPDPEAELAYVPAAVRLIKQRLGDRAPLIGFSGSPWTLATYMVEGGSSREFRKVKCLMYEEP 171          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_VIBHB (Uroporphyrinogen decarboxylase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=hemE PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.251e-31
Identity = 67/166 (40.36%), Postives = 103/166 (62.05%), Query Frame = 3
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  E V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   F  D  ILFSDILT    M +      G+GPV   PI   A+V+++   DPE  + YV  A+  +R+++N +  ++GF G+P+TL +Y+VEGGSSK F +IK++ +++P
Sbjct:   10 LRALLKEPVDYTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELASEVTLQPLRRFPLDAAILFSDILTIPDAMGLELRFAAGEGPVFDKPITCKADVEKIGLPDPEGELQYVMNAVRQIRKDLNGDVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYAEP 175          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_COLP3 (Uroporphyrinogen decarboxylase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=hemE PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.251e-31
Identity = 66/166 (39.76%), Postives = 103/166 (62.05%), Query Frame = 3
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+  PVW+MRQAGRY+  Y+ + +    F    +N +L  E+++QP   F  D  ILFSDILT    M +      G+GP    PI   A+VD++   DPE+ + YV  A+  +R+E+  E  ++GF G+P+TL +Y++EGGSSK F +IK++ F++P
Sbjct:   10 LRALLKQPVDYTPVWMMRQAGRYLPEYREVRKNAGDFMSVCKNAELACEVTIQPLRRFPLDAAILFSDILTIPDAMGLGLYFETGEGPKFERPITCKADVDKIAVPDPEDELGYVMNAVRTIRKELKGEVPLIGFSGSPWTLATYMIEGGSSKAFTKIKKMMFAEP 175          
The following BLAST results are available for this feature:
BLAST of FC921313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DCUP_MANSM3.079e-3140.96Uroporphyrinogen decarboxylase OS=Mannheimia succi... [more]
DCUP_GEOUR3.079e-3143.98Uroporphyrinogen decarboxylase OS=Geobacter uranii... [more]
DCUP_GEOSF3.079e-3143.98Uroporphyrinogen decarboxylase OS=Geobacter sp. (s... [more]
DCUP_DEIRA3.079e-3142.51Uroporphyrinogen decarboxylase OS=Deinococcus radi... [more]
DCUP_XYLFM4.021e-3140.72Uroporphyrinogen decarboxylase OS=Xylella fastidio... [more]
DCUP_VIBPA4.021e-3140.36Uroporphyrinogen decarboxylase OS=Vibrio parahaemo... [more]
DCUP_SERP54.021e-3140.36Uroporphyrinogen decarboxylase OS=Serratia proteam... [more]
DCUP_METCA4.021e-3137.95Uroporphyrinogen decarboxylase OS=Methylococcus ca... [more]
DCUP_VIBHB5.251e-3140.36Uroporphyrinogen decarboxylase OS=Vibrio harveyi (... [more]
DCUP_COLP35.251e-3139.76Uroporphyrinogen decarboxylase OS=Colwellia psychr... [more]

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Properties
Property NameValue
Genbank descriptionC32103E07EF RVDevelopN Citrus clementina cDNA clone C32103E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921313 ID=FC921313; Name=FC921313; organism=Citrus clementina; type=EST; length=678bp
GAAAGTTTCTAAGATCGAATCAAAGGCCCAACACAATGTCCTGCTCTTCA
ATTTCGGCTATTTCAAATTTTCCACTGTATTCCTCTTCTCACTCCAATTC
AAACTCCCGATATGTCCGCTGCGCCGTCGGAGGGACTGTAGCGGAACCGA
AAAATGTTTCTGTTGCCGAACCCATGTTGCTGAAAGCTGTTCGAGGAGAA
GATGTTGAAAGACCTCCAGTTTGGCTTATGAGGCAAGCAGGGAGGTACAT
GAAGAGTTATCAAATCATCTGCGAGAAGTATCCTTCATTTCGTGAAAGAT
CAGAAAATGTTGATCTTGTTGTGGAAATTTCTCTTCAGCCGTGGCATGTT
TTTAAGCCAGATGGTGTCATTTTGTTCTCAGACATTTTAACTCCTCTTTC
TGGGATGAATATACCTTTTGACATTATCAAGGGTAAGGGTCCTGTCATAT
TTGATCCTATAAACACAGATGCAGAAGTTGACCAAGTGAGAGAATTTGAT
CCTGAGGAGTCAGTTCCATATGTTGGGAAAGCATTGACAATCTTGCGAGA
AGAGGTAAACAATGAAGCAGCAGTTCTGGGTTTTGTTGGGGCTCCTTTCA
CCCTGGTGTCATATGTGGTTGAGGGTGGTTCATCGAAGCACTTCNAGCAA
ATAAAGCGACTAGCTTTCTCTCAACCCA
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