FC921313

Overview
NameFC921313
Unique NameFC921313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_ACTPJ (Uroporphyrinogen decarboxylase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=hemE PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.251e-31
Identity = 69/166 (41.57%), Postives = 97/166 (58.43%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            LKA+  E V+  PVW+MRQAGRY+  Y+    +   F     N DL  E++LQP   +  D  ILFSDILT    M +      G+GP    PI   A+VD +   DPE  + YV  A+  +R E+  E  ++GF G+P+TL +Y+VEGGSSK F +IK++ ++ P
Sbjct:   10 LKALLREPVDMTPVWMMRQAGRYLPEYKATRAEAGDFMALCRNADLACEVTLQPLRRYALDAAILFSDILTVPDAMGLGLSFGAGEGPKFARPIENKAQVDNLPIPDPESELQYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYADP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_ACTP7 (Uroporphyrinogen decarboxylase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=hemE PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.251e-31
Identity = 69/166 (41.57%), Postives = 97/166 (58.43%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            LKA+  E V+  PVW+MRQAGRY+  Y+    +   F     N DL  E++LQP   +  D  ILFSDILT    M +      G+GP    PI   A+VD +   DPE  + YV  A+  +R E+  E  ++GF G+P+TL +Y+VEGGSSK F +IK++ ++ P
Sbjct:   10 LKALLREPVDMTPVWMMRQAGRYLPEYKATRAEAGDFMALCRNADLACEVTLQPLRRYALDAAILFSDILTVPDAMGLGLSFGAGEGPKFARPIENKAQVDNLPIPDPESELQYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYADP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_ACTP2 (Uroporphyrinogen decarboxylase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=hemE PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.251e-31
Identity = 69/166 (41.57%), Postives = 97/166 (58.43%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            LKA+  E V+  PVW+MRQAGRY+  Y+    +   F     N DL  E++LQP   +  D  ILFSDILT    M +      G+GP    PI   A+VD +   DPE  + YV  A+  +R E+  E  ++GF G+P+TL +Y+VEGGSSK F +IK++ ++ P
Sbjct:   10 LKALLREPVDMTPVWMMRQAGRYLPEYKATRAEAGDFMALCRNADLACEVTLQPLRRYALDAAILFSDILTVPDAMGLGLSFGAGEGPKFARPIENKAQVDNLPIPDPESELQYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYADP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_VIBVY (Uroporphyrinogen decarboxylase OS=Vibrio vulnificus (strain YJ016) GN=hemE PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.858e-31
Identity = 66/166 (39.76%), Postives = 104/166 (62.65%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  E V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   F  D  ILFSDILT    M +      G+GP+  +PI   A+V+++   DPE  + YV  A+  +R+++N +  ++GF G+P+TL +Y+VEGGSSK F +IK++ +++P
Sbjct:   10 LRALLKEPVDCTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELASEVTLQPLRRFPLDAAILFSDILTIPDAMGLGLRFSTGEGPIFDNPITCKADVEKIGVPDPEGELQYVMNAVRQIRKDLNGDVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYAEP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_VIBVU (Uroporphyrinogen decarboxylase OS=Vibrio vulnificus GN=hemE PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.858e-31
Identity = 66/166 (39.76%), Postives = 104/166 (62.65%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  E V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   F  D  ILFSDILT    M +      G+GP+  +PI   A+V+++   DPE  + YV  A+  +R+++N +  ++GF G+P+TL +Y+VEGGSSK F +IK++ +++P
Sbjct:   10 LRALLKEPVDCTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELASEVTLQPLRRFPLDAAILFSDILTIPDAMGLGLRFSTGEGPIFDNPITCKADVEKIGVPDPEGELQYVMNAVRQIRKDLNGDVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYAEP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_HAES2 (Uroporphyrinogen decarboxylase OS=Haemophilus somnus (strain 2336) GN=hemE PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.858e-31
Identity = 69/166 (41.57%), Postives = 98/166 (59.04%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            LKA+  E V+  PVW+MRQAGRY+  Y+    K   F     N DL  E++LQP   +  D  ILFSDILT    M +      G+GP    PI+  + V  +   DPE+ + YV  A+  +R E+  E  ++GF G+P+TL +Y+VEGGSSK F +IK++ +S+P
Sbjct:   10 LKALLREPVDMTPVWMMRQAGRYLPEYKATRAKAGDFMSLCRNADLACEVTLQPLRRYDLDAAILFSDILTIPDAMGLGLSFGVGEGPKFARPIDNKSAVQNLPIPDPEQELQYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYSEP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_VIBCH (Uroporphyrinogen decarboxylase OS=Vibrio cholerae GN=hemE PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 8.957e-31
Identity = 68/166 (40.96%), Postives = 102/166 (61.45%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   F  D  ILFSDILT    M +      G+GPV   PI   A+VD++   DPE  + YV  A+  +R+++  E  ++GF G+P+TL +Y+VEGGSSK F +IK++ +S+P
Sbjct:   10 LRALLKQPVDYTPVWMMRQAGRYLPEYRATRAQAGDFMALCKNAELASEVTLQPLRRFPLDAAILFSDILTIPDAMGLGLRFAAGEGPVFERPITCKADVDKIGIPDPEGELQYVMNAVRQIRKDLQGEVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYSEP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_VIBC3 (Uroporphyrinogen decarboxylase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=hemE PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 8.957e-31
Identity = 68/166 (40.96%), Postives = 102/166 (61.45%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   F  D  ILFSDILT    M +      G+GPV   PI   A+VD++   DPE  + YV  A+  +R+++  E  ++GF G+P+TL +Y+VEGGSSK F +IK++ +S+P
Sbjct:   10 LRALLKQPVDYTPVWMMRQAGRYLPEYRATRAQAGDFMALCKNAELASEVTLQPLRRFPLDAAILFSDILTIPDAMGLGLRFAAGEGPVFERPITCKADVDKIGIPDPEGELQYVMNAVRQIRKDLQGEVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYSEP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_HAES1 (Uroporphyrinogen decarboxylase OS=Haemophilus somnus (strain 129Pt) GN=hemE PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.170e-30
Identity = 68/166 (40.96%), Postives = 97/166 (58.43%), Query Frame = 3 
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            LKA+  E V+  PVW+MRQAGRY+  Y+    K   F     N DL  E++LQP   +  D  ILFSDILT    M +      G+GP    P+   + V  +   DPE+ + YV  A+  +R E+  E  ++GF G+P+TL +Y+VEGGSSK F +IK++ +S+P
Sbjct:   10 LKALLREPVDMTPVWMMRQAGRYLPEYKATRAKAGDFMSLCRNADLACEVTLQPLRRYDLDAAILFSDILTIPDAMGLGLSFGVGEGPKFARPVENKSAVQNLPIPDPEQELQYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYSEP 175
[Close]
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_PSEA6 (Uroporphyrinogen decarboxylase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=hemE PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.528e-30
Identity = 67/173 (38.73%), Postives = 103/173 (59.54%), Query Frame = 3 
Query:  159 SVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            S+     L+A+  + V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   F  D  ILFSDILT    M +     +G+GP    PI + A++  +   DPE+ + YV  A+  +R+ +  E  ++GF G+P+TL +Y++EGGSSK F +IK++AFS P
Sbjct:    3 SLKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRFDLDAAILFSDILTIPDAMGLGLYFEQGEGPKFSKPITSMADIQNLPAPDPEQELQYVMNAVRTIRKNLQGEVPLIGFSGSPWTLATYMIEGGSSKAFTKIKKMAFSDP 175
The following BLAST results are available for this feature:
BLAST of FC921313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DCUP_ACTPJ5.251e-3141.57Uroporphyrinogen decarboxylase OS=Actinobacillus p... [more]
DCUP_ACTP75.251e-3141.57Uroporphyrinogen decarboxylase OS=Actinobacillus p... [more]
DCUP_ACTP25.251e-3141.57Uroporphyrinogen decarboxylase OS=Actinobacillus p... [more]
DCUP_VIBVY6.858e-3139.76Uroporphyrinogen decarboxylase OS=Vibrio vulnificu... [more]
DCUP_VIBVU6.858e-3139.76Uroporphyrinogen decarboxylase OS=Vibrio vulnificu... [more]
DCUP_HAES26.858e-3141.57Uroporphyrinogen decarboxylase OS=Haemophilus somn... [more]
DCUP_VIBCH8.957e-3140.96Uroporphyrinogen decarboxylase OS=Vibrio cholerae ... [more]
DCUP_VIBC38.957e-3140.96Uroporphyrinogen decarboxylase OS=Vibrio cholerae ... [more]
DCUP_HAES11.170e-3040.96Uroporphyrinogen decarboxylase OS=Haemophilus somn... [more]
DCUP_PSEA61.528e-3038.73Uroporphyrinogen decarboxylase OS=Pseudoalteromona... [more]

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Properties
Property NameValue
Genbank descriptionC32103E07EF RVDevelopN Citrus clementina cDNA clone C32103E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921313 ID=FC921313; Name=FC921313; organism=Citrus clementina; type=EST; length=678bp
GAAAGTTTCTAAGATCGAATCAAAGGCCCAACACAATGTCCTGCTCTTCA
ATTTCGGCTATTTCAAATTTTCCACTGTATTCCTCTTCTCACTCCAATTC
AAACTCCCGATATGTCCGCTGCGCCGTCGGAGGGACTGTAGCGGAACCGA
AAAATGTTTCTGTTGCCGAACCCATGTTGCTGAAAGCTGTTCGAGGAGAA
GATGTTGAAAGACCTCCAGTTTGGCTTATGAGGCAAGCAGGGAGGTACAT
GAAGAGTTATCAAATCATCTGCGAGAAGTATCCTTCATTTCGTGAAAGAT
CAGAAAATGTTGATCTTGTTGTGGAAATTTCTCTTCAGCCGTGGCATGTT
TTTAAGCCAGATGGTGTCATTTTGTTCTCAGACATTTTAACTCCTCTTTC
TGGGATGAATATACCTTTTGACATTATCAAGGGTAAGGGTCCTGTCATAT
TTGATCCTATAAACACAGATGCAGAAGTTGACCAAGTGAGAGAATTTGAT
CCTGAGGAGTCAGTTCCATATGTTGGGAAAGCATTGACAATCTTGCGAGA
AGAGGTAAACAATGAAGCAGCAGTTCTGGGTTTTGTTGGGGCTCCTTTCA
CCCTGGTGTCATATGTGGTTGAGGGTGGTTCATCGAAGCACTTCNAGCAA
ATAAAGCGACTAGCTTTCTCTCAACCCA
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