FC921317

Overview
NameFC921317
Unique NameFC921317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921317 vs. ExPASy Swiss-Prot
Match: ACDC_BACSU (Probable acyl-CoA dehydrogenase yngJ OS=Bacillus subtilis GN=yngJ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 48/149 (32.21%), Postives = 69/149 (46.31%), Query Frame = 2
Query:  251 LTSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQ 694
            LT E+Q VR  V++  +KEIAP      +  EFP     K+G L + G    + YG  G      A+A+ E+ +   S         SL    +   G+EEQKQ +L  LA    +  + LTEP  GSDA    T A      +++ G+
Sbjct:    5 LTKEQQMVREMVKDFAKKEIAPHAEHVDQTGEFPMQTFKKMGELGLMGIPFPEEYGGSGGDTISYALAVEEVGKACGSTGLSYAAAVSLGASPLYYFGTEEQKQTHLTPLASGTALGSFGLTEPNAGSDAGGTQTKAISNGDEYVINGE 153          
BLAST of FC921317 vs. ExPASy Swiss-Prot
Match: ACADS_PIG (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus scrofa GN=ACADS PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 47/146 (32.19%), Postives = 73/146 (50.00%), Query Frame = 2
Query:  266 QAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQSA 700
            Q +R   R+  EKE+ PI  +  ++  FP   + K+G L +    + +     G       IA+ EI+R  AS    + V++ L +  I   GS+EQKQ+++      + + C+AL+EP  GSDA A  TTA      W+L G  A
Sbjct:   39 QMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNNFLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDAGAAATTAQADHDSWVLSGTKA 184          
BLAST of FC921317 vs. ExPASy Swiss-Prot
Match: ACDSB_PONAB (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=ACADSB PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 56/186 (30.11%), Postives = 85/186 (45.70%), Query Frame = 2
Query:  182 FPQATPASKFPPCASDYYQFDDLL---------------TSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTIKG-YGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEG 691
            FP    + K PP  S   Q + LL               T EE  ++  V++  +++IAP++    E ++    VI  L    + G  +   YG  G S     + I E+A+VDAS + F  + ++L    I   G+EEQK  YLP L     +  + L+E   GSD+ AL T A K    ++L G
Sbjct:   19 FPTCLSSWKIPPHVSKSSQSEALLNITNNGIHFAPLQTFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKGTYLPQLT-TEKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNG 203          
BLAST of FC921317 vs. ExPASy Swiss-Prot
Match: ACAD8_HUMAN (Isobutyryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACAD8 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 51/150 (34.00%), Postives = 76/150 (50.67%), Query Frame = 2
Query:  257 SEEQAVRMKVR-ECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTIK-GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQSA 700
            +EEQ    KV  +   +E+AP M E+ +K  FP  V+ K   L   G  I+   G  G S    ++    +A    S + +I +H+  A + I   G+EEQ+ K+ P L  +   A + LTEP  GSDA++L T+A K    +IL G  A
Sbjct:   42 NEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHNMCAWM-IDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKA 190          
BLAST of FC921317 vs. ExPASy Swiss-Prot
Match: ACDSB_HUMAN (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADSB PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 47/147 (31.97%), Postives = 74/147 (50.34%), Query Frame = 2
Query:  254 TSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTIKG-YGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEG 691
            T EE  ++  V++  +++IAP++    E ++    VI  L    + G  +   YG  G S     + I E+A+VDAS + F  + ++L    I   G+EEQK  YLP L     +  + L+E   GSD+ AL T A K    ++L G
Sbjct:   58 TDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLT-TEKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNG 203          
BLAST of FC921317 vs. ExPASy Swiss-Prot
Match: ACAD8_MOUSE (Isobutyryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acad8 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 46/151 (30.46%), Postives = 75/151 (49.67%), Query Frame = 2
Query:  251 LTSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTIK-GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQSA 700
            L  E++  +    +   +E+AP M E+ +K  FP  V+ K   L   G  ++   G  G S    ++    +A    S + +I +H+  A + I   G+EEQ+ K+ P L  +   A + LTEP  GSDA++L T+A +    +IL G  A
Sbjct:   39 LNEEQKGFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHNMCAWM-IDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKQQGDHYILNGSKA 188          
BLAST of FC921317 vs. ExPASy Swiss-Prot
Match: FADE_BACSU (Probable acyl-CoA dehydrogenase OS=Bacillus subtilis GN=fadE PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 51/152 (33.55%), Postives = 75/152 (49.34%), Query Frame = 2
Query:  254 TSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHV--IPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG--WILEGQ 694
            T E + +     + +E+++ P  ++  E  +F   V  + K G L + G  + + YG  G     +A+   + +R   S S     H  +  L I   GSEEQK+KYLP LA    IA +ALTEP  GSDA    TTA   E G  ++L G+
Sbjct:   31 TDEHKMIAKTTEDYIEQDVLP-HIDDIENHQFEHSVRLLKKAGELGLLGADVPEEYGGLGLDKISSALITEKFSRA-GSFSLSYGAHVGIGSLPIVFFGSEEQKKKYLPGLASGEKIAAYALTEPGSGSDALGAKTTAVLNEAGTHYVLTGE 180          
BLAST of FC921317 vs. ExPASy Swiss-Prot
Match: ACAD9_MOUSE (Acyl-CoA dehydrogenase family member 9, mitochondrial OS=Mus musculus GN=Acad9 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 43/113 (38.05%), Postives = 65/113 (57.52%), Query Frame = 2
Query:  335 EKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVE 670
            ++ + P   + KL +L + G  + + YG  G S T  A  + EI  +DAS +  +  H ++ +  I L G++EQK KYLP L+    IA + LTEPA GSDA+++ T AT  E
Sbjct:   93 QEGKIPVDTLEKLKSLGLFGIQVPEEYGGLGLSNTMYA-RLGEIISLDASITVTLAAHQAIGLKGIILVGNDEQKAKYLPKLSSGEHIAAFCLTEPASGSDAASIQTRATLSE 204          
BLAST of FC921317 vs. ExPASy Swiss-Prot
Match: ACADM_MOUSE (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadm PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 42/149 (28.19%), Postives = 75/149 (50.34%), Query Frame = 2
Query:  251 LTSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQ 694
            LT +++  +   R+   +EI P+  EY +  E+PF +I +   L +    I +  G  G     A +   E+A       T I  +S L  + + L G+++QK+KYL  + +   +  + +TEP+ GSD +A+ T A K    +++ GQ
Sbjct:   41 LTEQQKEFQATARKFAREEIIPVAPEYDKSGEYPFPLIKRAWELGLINAHIPESCGGLGLGTFDACLITEELAYGCTGVQTAIEANS-LGQMPVILAGNDQQKKKYLGRMTEQPMMCAYCVTEPSAGSDVAAIKTKAEKKGDEYVINGQ 188          
The following BLAST results are available for this feature:
BLAST of FC921317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
ACDC_BACSU6.967e-1332.21Probable acyl-CoA dehydrogenase yngJ OS=Bacillus s... [more]
ACADS_PIG6.967e-1332.19Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACDSB_PONAB2.648e-1230.11Short/branched chain specific acyl-CoA dehydrogena... [more]
ACAD8_HUMAN1.314e-1134.00Isobutyryl-CoA dehydrogenase, mitochondrial OS=Hom... [more]
ACDSB_HUMAN1.716e-1131.97Short/branched chain specific acyl-CoA dehydrogena... [more]
ACAD8_MOUSE3.823e-1130.46Isobutyryl-CoA dehydrogenase, mitochondrial OS=Mus... [more]
FADE_BACSU4.993e-1133.55Probable acyl-CoA dehydrogenase OS=Bacillus subtil... [more]
ACAD9_MOUSE4.993e-1138.05Acyl-CoA dehydrogenase family member 9, mitochondr... [more]
ACADM_MOUSE6.521e-1128.19Medium-chain specific acyl-CoA dehydrogenase, mito... [more]

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Properties
Property NameValue
Genbank descriptionC32103E12EF RVDevelopN Citrus clementina cDNA clone C32103E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921317 ID=FC921317; Name=FC921317; organism=Citrus clementina; type=EST; length=704bp
GACGTTTTTTTTTCAACGCTTAAGACTTCGCTTTAACGCGCTCTGAGTTT
CCTCCGTCACATCACACACACTGTTATCCGTAATCACCATGACTATTCAC
TCATCCAAACATCAAGATGATGTTGACAAAAATGCCAGGAGTTCGTATTT
TAATTTACCAGCATTGGATATTTCAGTCGCATTCCCTCAAGCAACACCGG
CGTCTAAGTTTCCTCCTTGTGCGTCAGACTACTATCAATTTGATGATCTC
TTGACTTCGGAGGAGCAGGCTGTTCGGATGAAAGTGAGAGAGTGTATGGA
GAAAGAAATAGCCCCTATAATGGTGGAGTATTGGGAGAAAGCAGAATTTC
CCTTTCATGTTATTCCAAAGCTTGGTGCCCTACGCGTAGCTGGTGGCACA
ATAAAGGGTTATGGCTGTCCTGGTCACTCTGTTACTGGAGCTGCTATTGC
TATAGCAGAAATTGCTCGAGTTGATGCTAGTTGTTCTACTTTTATATTGG
TGCATTCCTCTCTGGCGATGCTGACTATTGCATTGTGCGGGTCAGAGGAA
CAGAAGCAGAAATATCTACCTTCTTTGGCTCAGTTGAACACCATTGCCTG
TTGGGCTTTGACTGAACCTGCCTATGGGAGTGATGCAAGTGCTTTGAACA
CAACTGCTACTAAGGTGGAAGGAGGTTGGATACTTGAAGGTCAAAGCGCT
GGAT
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