FC921329

Overview
NameFC921329
Unique NameFC921329
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig171 contig Ccv1_Contig171:44..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921329 vs. ExPASy Swiss-Prot
Match: Y5182_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51820 OS=Arabidopsis thaliana GN=At1g51820 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.077e-29
Identity = 67/173 (38.73%), Postives = 102/173 (58.96%), Query Frame = 3
Query:  201 YEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV-SKSYTSTYI 716
            Y  ++ MT N     I+G G    VY   +   + VA+K L     Q  K+F+ E+E +  + H+NLV L GY        L Y++M NG L + + G   +  L+W TRLKI + +AQGL YLH+ C P ++HRDVK++NILL++ FEA L DFG+++S  +  +++ ST +
Sbjct:  570 YSQVVIMTNNFQR--ILGKGGFGMVYHGFVNGTEQVAVKILSHSSSQGYKQFKAEVELLLRVHHKNLVGLVGYCDEGDNLALIYEYMANGDLKEHMSGTRNRFILNWGTRLKIVIESAQGLEYLHNGCKPPMVHRDVKTTNILLNEHFEAKLADFGLSRSFLIEGETHVSTVV 740          
BLAST of FC921329 vs. ExPASy Swiss-Prot
Match: Y5181_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51810 OS=Arabidopsis thaliana GN=At1g51810 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.077e-29
Identity = 68/173 (39.31%), Postives = 103/173 (59.54%), Query Frame = 3
Query:  201 YEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV-SKSYTSTYI 716
            Y +++ MT N  +  I+G G    VY   +   + VA+K L     Q  K+F+ E+E +  + H+NLV L GY        L Y++M NG L + + G      L+W TRLKIAL AAQGL YLH+ C P ++HRDVK++NILL++ F+  L DFG+++S  +  +++ ST +
Sbjct:  569 YAEVLTMTNNFQK--ILGKGGFGIVYYGSVNGTEQVAVKMLSHSSAQGYKQFKAEVELLLRVHHKNLVGLVGYCEEGDKLALIYEYMANGDLDEHMSGKRGGSILNWGTRLKIALEAAQGLEYLHNGCKPLMVHRDVKTTNILLNEHFDTKLADFGLSRSFPIEGETHVSTVV 739          
BLAST of FC921329 vs. ExPASy Swiss-Prot
Match: LRKA1_ARATH (Lectin-domain containing receptor kinase A4.1 OS=Arabidopsis thaliana GN=LECRKA4.1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.077e-29
Identity = 64/161 (39.75%), Postives = 97/161 (60.25%), Query Frame = 3
Query:  201 YEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFMENGSLWDILHGPTKKK--KLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAK 677
            Y D+   T+   +  IIG G   TV+K  L N  P+A+K++     Q ++EF  E+E++G ++H+NLV+LQG+    +  LL YD++ NGSL  +L+   ++    L W+ R +IA G A GL YLH +    +IHRDVK SN+L+D      L DFG+A+
Sbjct:  357 YRDLYVATDGFKKTGIIGTGGFGTVFKGKLPNSDPIAVKKIIPSSRQGVREFVAEIESLGKLRHKNLVNLQGWCKHKNDLLLIYDYIPNGSLDSLLYTVPRRSGAVLSWNARFQIAKGIASGLLYLHEEWEKIVIHRDVKPSNVLIDSKMNPRLGDFGLAR 517          
BLAST of FC921329 vs. ExPASy Swiss-Prot
Match: CRK18_ARATH (Cysteine-rich receptor-like protein kinase 18 OS=Arabidopsis thaliana GN=CRK18 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 7.077e-29
Identity = 69/163 (42.33%), Postives = 94/163 (57.67%), Query Frame = 3
Query:  222 TENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSYTST 710
            T N SE+  +G G    VYK +L N   +A+KRL     Q   EF+ E+  V  ++H NLV L G+SL     LL Y+F+ N SL   L  PTK+ +LDW  R  I  G  +G+ YLH D   +IIHRD+K+SNILLD D    + DFG+A+   V ++  +T
Sbjct:  336 TSNFSERNKLGKGGFGEVYKGMLMNGTEIAVKRLSKTSGQGEVEFKNEVVVVAKLQHINLVRLLGFSLQGEEKLLVYEFVSNKSLDYFLFDPTKRNQLDWTMRRNIIGGITRGILYLHQDSRLKIIHRDLKASNILLDADMNPKIADFGMARIFGVDQTVANT 498          
BLAST of FC921329 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.207e-28
Identity = 69/172 (40.12%), Postives = 102/172 (59.30%), Query Frame = 3
Query:  204 EDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFMENGSLWDILHGPTKKK-KLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSYTSTYI 716
            + I R T N   +  IG G    VYK VL +   +A+K+L S   Q  +EF TE+  + +++H NLV L G  +     LL Y+++EN SL   L G  K++  LDW TR K+ +G A+GLAYLH +   +I+HRD+K++N+LLD    A ++DFG+AK      ++ ST I
Sbjct:  658 KQIKRATNNFDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFGTEKQRLHLDWSTRNKVCIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKLDEEENTHISTRI 829          
BLAST of FC921329 vs. ExPASy Swiss-Prot
Match: Y5188_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51880 OS=Arabidopsis thaliana GN=At1g51880 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.207e-28
Identity = 69/173 (39.88%), Postives = 106/173 (61.27%), Query Frame = 3
Query:  201 YEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV-SKSYTSTYI 716
            Y ++++MT N     ++G G   TVY   L++ + VA+K L     Q  KEF+ E+E +  + HRNLV L GY        L Y++M NG L + + G      L W+ R++IA+ AAQGL YLH+ C+P ++HRDVK++NILL++ + A L DFG+++S  V  +S+ ST +
Sbjct:  558 YPEVLKMTNNFER--VLGKGGFGTVYHGNLEDTQ-VAVKMLSHSSAQGYKEFKAEVELLLRVHHRNLVGLVGYCDDGDNLALIYEYMANGDLKENMSGKRGGNVLTWENRMQIAVEAAQGLEYLHNGCTPPMVHRDVKTTNILLNERYGAKLADFGLSRSFPVDGESHVSTVV 727          
BLAST of FC921329 vs. ExPASy Swiss-Prot
Match: Y1839_ARATH (Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.577e-28
Identity = 73/190 (38.42%), Postives = 111/190 (58.42%), Query Frame = 3
Query:  147 NYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLF-YDFMENGSLWDILHGP-TKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSYTST 710
            ++   K   L + + +  YE++   T N      +G G   TVY   LK+ + VA+KRLY +  +  ++F  E+E +  ++H NLV+L G S   S +LL  Y+++ NG+L D LHGP      L W  RLKIA+  A  L YLH   + +IIHRDVKS+NILLD++F   + DFG+++   + K++ ST
Sbjct:  316 SFDIEKAEELLVGVHIFSYEELEEATNNFDPSKELGDGGFGTVYYGKLKDGRSVAVKRLYDNNFKRAEQFRNEVEILTGLRHPNLVALFGCSSKQSRDLLLVYEYVANGTLADHLHGPQANPSSLPWSIRLKIAVETASALKYLH---ASKIIHRDVKSNNILLDQNFNVKVADFGLSRLFPMDKTHVST 502          
BLAST of FC921329 vs. ExPASy Swiss-Prot
Match: THE1_ARATH (Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.577e-28
Identity = 68/161 (42.24%), Postives = 98/161 (60.87%), Query Frame = 3
Query:  198 VYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKS 680
            ++++IM  T    E  ++G G    VYK  L++   VA+KR      Q + EF TE+E +  ++HR+LVSL GY    S  +L Y++M NG L   L+G      L W  RL+I +GAA+GL YLH   S  IIHRDVK++NILLD++  A + DFG++K+
Sbjct:  499 MFQEIMDATNKFDESSLLGVGGFGRVYKGTLEDGTKVAVKRGNPRSEQGMAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYG-ADLPPLSWKQRLEICIGAARGLHYLHTGASQSIIHRDVKTTNILLDENLVAKVADFGLSKT 658          
BLAST of FC921329 vs. ExPASy Swiss-Prot
Match: CRK43_ARATH (Putative cysteine-rich receptor-like protein kinase 43 OS=Arabidopsis thaliana GN=CRK43 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.577e-28
Identity = 64/159 (40.25%), Postives = 95/159 (59.75%), Query Frame = 3
Query:  201 YEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAK 677
            Y  + + T N +E   +G G    V+K  L + + +AIKRL+    +   E   E++ +   +H+NLV L G   ++  + + Y+F+ N SL  IL  P KKK+LDW  R  I LG A+GL YLH  C  +IIHRD+K+SNILLD  ++  ++DFG+AK
Sbjct:  321 YSTLKKATNNFNESCKLGVGGYGEVFKGTLSDGREIAIKRLHVSGKKPRDEIHNEIDVISRCQHKNLVRLLGCCFTNMNSFIVYEFLANTSLDHILFNPEKKKELDWKKRRTIILGTAEGLEYLHETC--KIIHRDIKASNILLDLKYKPKISDFGLAK 477          
BLAST of FC921329 vs. ExPASy Swiss-Prot
Match: CRK12_ARATH (Putative cysteine-rich receptor-like protein kinase 12 OS=Arabidopsis thaliana GN=CRK12 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.577e-28
Identity = 70/170 (41.18%), Postives = 96/170 (56.47%), Query Frame = 3
Query:  201 YEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSYTST 710
            ++ I   TEN ++   +G G    VYK  L N   VA+KRL     Q  +EF+ E+  V  ++HRNLV L GY L     +L Y+F+ N SL   L  PTK+ +LDW  R  I  G  +G+ YLH D    IIHRD+K+SNILLD D    + DFG+A+   + +S  +T
Sbjct:  357 FKTIEVATENFAKTNKLGQGGFGEVYKGTLVNGTEVAVKRLSKTSEQGAQEFKNEVVLVAKLQHRNLVKLLGYCLEPEEKILVYEFVPNKSLDYFLFDPTKQGQLDWTKRYNIIGGITRGILYLHQDSRLTIIHRDLKASNILLDADMIPKIADFGMARISGIDQSVANT 526          
The following BLAST results are available for this feature:
BLAST of FC921329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 310
Match NameE-valueIdentityDescription
Y5182_ARATH7.077e-2938.73Probable LRR receptor-like serine/threonine-protei... [more]
Y5181_ARATH7.077e-2939.31Probable LRR receptor-like serine/threonine-protei... [more]
LRKA1_ARATH7.077e-2939.75Lectin-domain containing receptor kinase A4.1 OS=A... [more]
CRK18_ARATH7.077e-2942.33Cysteine-rich receptor-like protein kinase 18 OS=A... [more]
Y5344_ARATH1.207e-2840.12Probable LRR receptor-like serine/threonine-protei... [more]
Y5188_ARATH1.207e-2839.88Probable LRR receptor-like serine/threonine-protei... [more]
Y1839_ARATH1.577e-2838.42Probable serine/threonine-protein kinase At1g18390... [more]
THE1_ARATH1.577e-2842.24Receptor-like protein kinase THESEUS 1 OS=Arabidop... [more]
CRK43_ARATH1.577e-2840.25Putative cysteine-rich receptor-like protein kinas... [more]
CRK12_ARATH1.577e-2841.18Putative cysteine-rich receptor-like protein kinas... [more]

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Properties
Property NameValue
Genbank descriptionC32103F12EF RVDevelopN Citrus clementina cDNA clone C32103F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921329 ID=FC921329; Name=FC921329; organism=Citrus clementina; type=EST; length=716bp
ATCCAACGGAACGAGTTACAATTTCTAAAGCAGCTATTCTCGGAATTGCT
CTCGGTGCACTTGTAATTCTTCTCATGATCCTGGTGGCAGCATGCCGACC
ACACAATCCTACTCATTTTCCAGATGGATCACTTGACAAACCAGTTAATT
ACTCCACTCCCAAGTTAGTGATCCTTCACATGAACATGGCACTTCATGTG
TATGAAGACATTATGAGGATGACCGAGAATTTGAGTGAGAAGTACATAAT
TGGTTATGGGGCATCGAGTACAGTGTACAAGTGTGTTCTTAAAAATTGTA
AGCCAGTGGCTATCAAGCGACTTTACTCTCACTATCCACAGTGCTTGAAG
GAATTTGAGACAGAGCTTGAGACGGTTGGGAGCATCAAGCACCGAAATCT
GGTCAGCCTCCAAGGATACTCGTTGTCCTCCTCAGGGAACCTTCTCTTCT
ATGATTTTATGGAAAATGGTAGTCTTTGGGATATTCTTCATGGTCCAACA
AAGAAGAAAAAGCTTGACTGGGACACTCGACTGAAAATAGCACTAGGAGC
TGCACAAGGGCTAGCGTATTTACACCATGATTGTAGTCCTCGAATCATCC
ACCGGGATGTGAAGTCCTCTAATATTCTATTGGACAAGGATTTTGAAGCC
CATCTCACAGATTTTGGAATTGCCAAAAGTTTATGTGTGTCCAAGTCGTA
TACATCTACTTACATC
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