FC921346

Overview
NameFC921346
Unique NameFC921346
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921346 vs. ExPASy Swiss-Prot
Match: LRKA2_ARATH (Lectin-domain containing receptor kinase A4.2 OS=Arabidopsis thaliana GN=LECRKA4.2 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.200e-45
Identity = 93/216 (43.06%), Postives = 137/216 (63.43%), Query Frame = 2
Query:   65 YQDLLSATSNFLAENLIGKGGSSQVYKGCL--PDGKELAVKILKP-SEDVIKEFVLEIEIITTLHHKNIISLLGFCFEDNNLLLVYDFLSRGSLEENLHGN-KKDPAAFGWSERYKVAMGVAEALEYLHSGSAQRVIHRDVKSSNILLSDDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLTGRKP 700
            Y+DL +AT  F    ++G GG   V++G L  P   ++AVK + P S   ++EF+ EIE +  L HKN+++L G+C + N+LLL+YD++  GSL+  L+   ++      W+ R+K+A G+A  L YLH    + VIHRD+K SN+L+ DD  P+L DFGLA+     S   T T V GT GY+APE    GK +   DV+AFGV+LLE+++GR+P
Sbjct:  351 YKDLYAATDGFKENRIVGTGGFGTVFRGNLSSPSSDQIAVKKITPNSMQGVREFIAEIESLGRLRHKNLVNLQGWCKQKNDLLLIYDYIPNGSLDSLLYSRPRQSGVVLSWNARFKIAKGIASGLLYLHEEWEKVVIHRDIKPSNVLIEDDMNPRLGDFGLARLYERGSQSNT-TVVVGTIGYMAPELARNGKSSSASDVFAFGVLLLEIVSGRRP 565          
BLAST of FC921346 vs. ExPASy Swiss-Prot
Match: CRK27_ARATH (Cysteine-rich receptor-like protein kinase 27 OS=Arabidopsis thaliana GN=CRK27 PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 9.200e-45
Identity = 95/228 (41.67%), Postives = 142/228 (62.28%), Query Frame = 2
Query:   20 EGLHEKYSATCRL-FNYQDLLSATSNFLAENLIGKGGSSQVYKGCLPDGKELAVKILK-PSEDVIKEFVLEIEIITTLHHKNIISLLGFCFEDNNLLLVYDFLSRGSLEENLHGNKKDPAAFGWSERYKVAMGVAEALEYLHSGSAQRVIHRDVKSSNILLSDDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLTGRK 697
            E    ++ +T  L F+++ +  AT +F   N IG+GG   VYKG LPDG E+AVK L   S     EF  E+ ++T L HKN++ L GF  +++  LLVY+F+   SL+  L    K      W +RY + +GV+  L YLH GS   +IHRD+KSSN+LL +   P++SDFG+A+     ++      V GT+GY+APEY M+G+ + K DVY+FGV++LE++TG++
Sbjct:  307 ENAENEFESTDSLHFDFETIRVATDDFSLTNKIGEGGFGVVYKGHLPDGLEIAVKRLSIHSGQGNAEFKTEVLLMTKLQHKNLVKLFGFSIKESERLLVYEFIPNTSLDRFLFDPIKQKQ-LDWEKRYNIIVGVSRGLLYLHEGSEFPIIHRDLKSSNVLLDEQMLPKISDFGMARQFDFDNTQAVTRRVVGTYGYMAPEYAMHGRFSVKTDVYSFGVLVLEIITGKR 533          
BLAST of FC921346 vs. ExPASy Swiss-Prot
Match: CRK20_ARATH (Putative cysteine-rich receptor-like protein kinase 20 OS=Arabidopsis thaliana GN=CRK20 PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 9.200e-45
Identity = 93/217 (42.86%), Postives = 136/217 (62.67%), Query Frame = 2
Query:   59 FNYQDLLSATSNFLAENLIGKGGSSQVYKGCLPDGKELAVKIL-KPSEDVIKEFVLEIEIITTLHHKNIISLLGFCFEDNNLLLVYDFLSRGSLEENLHGNKKDPAAFG---WSERYKVAMGVAEALEYLHSGSAQRVIHRDVKSSNILLSDDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLTGRK 697
            F+++ +++AT  FL  N +G+GG  +VYKG  P G ++AVK L K S    KEF  E+ ++  L H+N++ LLG+C E    +LVY+F+   SL+  L     DP   G   WS RYK+  G+A  + YLH  S   +IHRD+K+ NILL  D  P+++DFG+A+      +      V GT+GY+APEY MYGK + K DVY+FGV++LE+++G K
Sbjct:  332 FDFKAIVAATDIFLPINKLGQGGFGEVYKGTFPSGVQVAVKRLSKNSGQGEKEFENEVVVVAKLQHRNLVKLLGYCLEGEEKILVYEFVPNKSLDYFLF----DPTMQGQLDWSRRYKIIGGIARGILYLHQDSRLTIIHRDLKAGNILLDADMNPKVADFGMARIFGMDQTEANTRRVVGTYGYMAPEYAMYGKFSMKSDVYSFGVLVLEIVSGMK 544          
BLAST of FC921346 vs. ExPASy Swiss-Prot
Match: Y1105_ARATH (Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana GN=At1g11050 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.202e-44
Identity = 98/219 (44.75%), Postives = 139/219 (63.47%), Query Frame = 2
Query:   59 FNYQDLLSATSNFLAENLIGKGGSSQVYKGCLPDGKELAVKILKPSE-DVIKEFVLEIEIITTLHHKNIISLLGFCFEDNNL----LLVYDFLSRGSLEENLHGN-KKDPAAFGWSERYKVAMGVAEALEYLHSGSAQRVIHRDVKSSNILLSDDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLTGRK 697
            F  ++L  AT+NF  +N IG+GG   VYKG LPDG  +AVK +  SE     EF  E+EII+ L H+N++ L G    D++      LVYD++S G+L+++L    +       W +R  + + VA+ L YLH G    + HRD+K +NILL  D   +++DFGLAK +    SH+T T VAGT GYLAPEY +YG++ +K DVY+FGVV+LE++ GRK
Sbjct:  283 FKIEELEKATNNFSQKNFIGRGGFGFVYKGVLPDGSVIAVKKVIESEFQGDAEFRNEVEIISNLKHRNLVPLRGCSMVDDDSESQRYLVYDYMSNGNLDDHLFPRGETTKMPLSWPQRKSIILDVAKGLAYLHYGVKPAIYHRDIKGTNILLDVDMRARVADFGLAKQSREGESHLT-TRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVILEIMCGRK 500          
BLAST of FC921346 vs. ExPASy Swiss-Prot
Match: Y2289_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g28960 OS=Arabidopsis thaliana GN=At2g28960 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.569e-44
Identity = 94/233 (40.34%), Postives = 146/233 (62.66%), Query Frame = 2
Query:    5 LPKELEGLHEKYS--ATCRLFNYQDLLSATSNFLAENLIGKGGSSQVYKGCLPDGKELAVKILKPSE-DVIKEFVLEIEIITTLHHKNIISLLGFCFEDNNLLLVYDFLSRGSLEENLHGNKKDPAAFGWSERYKVAMGVAEALEYLHSGSAQRVIHRDVKSSNILLSDDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLTGR 694
            LP    GL  + S     + F Y ++ + T NF  E ++G+GG   VY G L   + +AVK+L  S     KEF  E+E++  +HH N++SL+G+C E++NL L+Y++   G L+++L G ++  +   WS R K+ +  A+ LEYLH+G    ++HRDVK++NILL + F+ +L+DFGL++           T VAGT GYL PEY+   ++N+K DVY+FG+VLLE++T R
Sbjct:  543 LPTVQHGLPNRPSIFTQTKRFTYSEVEALTDNF--ERVLGEGGFGVVYHGILNGTQPIAVKLLSQSSVQGYKEFKAEVELLLRVHHVNLVSLVGYCDEESNLALLYEYAPNGDLKQHLSG-ERGGSPLKWSSRLKIVVETAQGLEYLHTGCKPPMVHRDVKTTNILLDEHFQAKLADFGLSRSFPVGGETHVSTAVAGTPGYLDPEYYRTNRLNEKSDVYSFGIVLLEIITSR 772          
BLAST of FC921346 vs. ExPASy Swiss-Prot
Match: Y2197_ARATH (Probable protein kinase At2g41970 OS=Arabidopsis thaliana GN=At2g41970 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.569e-44
Identity = 94/220 (42.73%), Postives = 137/220 (62.27%), Query Frame = 2
Query:   71 DLLSATSNFLAENLIGKGGSSQVYKGCLPDGKELAVKIL--KPSEDVIKEFVLEIEIITTLHHKNIISLLGFCFEDNNLLLVYDFLSRGSLEENLHGNKKDPAA-----FGWSERYKVAMGVAEALEYLHSGSAQRVIHRDVKSSNILLSDDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLTGRKPYKH 709
            +L     NF  + LIG+G   +V+ G    G+ +A+K L    SE+   +F  ++ +++ L H + + LLG+C E NN +L+Y F ++GSL + LHG K    A       W++R K+A G A+ LE+LH      ++HRDV+SSN+LL DDF  +++DF L   +S +++ +  T V GTFGY APEY M G++  K DVY+FGVVLLELLTGRKP  H
Sbjct:   65 ELNRMAGNFGNKALIGEGSYGRVFCGKFK-GEAVAIKKLDASSSEEPDSDFTSQLSVVSRLKHDHFVELLGYCLEANNRILIYQFATKGSLHDVLHGRKGVQGAEPGPVLNWNQRVKIAYGAAKGLEFLHEKVQPPIVHRDVRSSNVLLFDDFVAKMADFNLTNASSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDH 283          
BLAST of FC921346 vs. ExPASy Swiss-Prot
Match: SRK6_BRAOE (Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.569e-44
Identity = 94/230 (40.87%), Postives = 141/230 (61.30%), Query Frame = 2
Query:   11 KELEGLHEKYSATCRLFNYQDLLSATSNFLAENLIGKGGSSQVYKGCLPDGKELAVKIL-KPSEDVIKEFVLEIEIITTLHHKNIISLLGFCFEDNNLLLVYDFLSRGSLEENLHGNKKDPAAFGWSERYKVAMGVAEALEYLHSGSAQRVIHRDVKSSNILLSDDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLTGRK 697
            +E  G ++       L   + ++ AT NF + N +G+GG   VYKG L DGKE+AVK L K S     EF+ E+ +I  L H N++ +LG C E +  +L+Y++L   SL+  L G K   +   W+ER+ +  GVA  L YLH  S  R+IHRD+K SNILL  +  P++SDFG+A+      +      V GT+GY++PEY MYG  ++K DV++FGV++LE+++G+K
Sbjct:  500 REFSGEYKFEELELPLIEMETVVKATENFSSCNKLGQGGFGIVYKGRLLDGKEIAVKRLSKTSVQGTDEFMNEVTLIARLQHINLVQVLGCCIEGDEKMLIYEYLENLSLDSYLFG-KTRRSKLNWNERFDITNGVARGLLYLHQDSRFRIIHRDLKVSNILLDKNMIPKISDFGMARIFERDETEANTMKVVGTYGYMSPEYAMYGIFSEKSDVFSFGVIVLEIVSGKK 728          
BLAST of FC921346 vs. ExPASy Swiss-Prot
Match: Y4291_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g29180 OS=Arabidopsis thaliana GN=At4g29180 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.050e-44
Identity = 93/230 (40.43%), Postives = 146/230 (63.48%), Query Frame = 2
Query:   53 RLFNYQDLLSATSNFLAENLIGKGGSSQVYKGCLPDGKELAVKILKPSE--------------DVIKEFVLEIEIITTLHHKNIISLLGFCFEDNNLLLVYDFLSRGSLEENLHGNKKDPAAFGWSERYKVAMGVAEALEYLHSGSAQRVIHRDVKSSNILLSDDFEPQLSDFGLAK-WASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLTGRK 697
            R F Y ++ S T+NF    +IGKGG   VY G L DG E+AVK++  S                V KEF +E E++ T+HH+N+ S +G+C +  ++ L+Y++++ G+L++ L     +  +  W +R  +A+  A+ LEYLH G    ++HRDVK++NILL+D+ E +++DFGL+K +     SH+  T V GT GY+ PEY+   K+N+K DVY+FG+VLLEL+TG++
Sbjct:  555 RRFTYSEVSSITNNF--NKVIGKGGFGIVYLGSLEDGTEIAVKMINDSSFGKSKGSSSSSSSSQVSKEFQVEAELLLTVHHRNLASFVGYCDDGRSMALIYEYMANGNLQDYLSSENAEDLS--WEKRLHIAIDSAQGLEYLHHGCRPPIVHRDVKTANILLNDNLEAKIADFGLSKVFPEDDLSHVV-TAVMGTPGYVDPEYYNTFKLNEKSDVYSFGIVLLELITGKR 779          
BLAST of FC921346 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.050e-44
Identity = 101/236 (42.80%), Postives = 141/236 (59.75%), Query Frame = 2
Query:   41 SATCRLFNYQDLLSATSNFLAENLIGKGGSSQVYKGCLPD----------GKELAVKILKPSE-DVIKEFVLEIEIITTLHHKNIISLLGFCFEDNNLLLVYDFLSRGSLEENLHGN-KKDPAAFGWSERYKVAMGVAEALEYLHSGSAQRVIHRDVKSSNILLSDDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLTGRKPYKHD 712
            S T + F++ +L  AT NF +++++G+GG   V++G L +          G  +AVK L P      +E++ EI  +  L H N++ L+G+C ED   LLVY+F+ +GSLE +L  N  KD     W  R KVA+  A+ L +LHS    +VI+RD+K+SNILL  DF  +LSDFGLA+           T V GTFGY APEY   G +N + DVY+FGVVLLELL GR+   H+
Sbjct:   43 STTVKSFSFNELKLATRNFRSDSVVGEGGFGCVFRGWLDETTLTPTKSSSGLVIAVKRLNPDGFQGHREWLTEINYLGQLSHPNLVKLIGYCLEDEQRLLVYEFMHKGSLENHLFANGNKDFKPLSWILRIKVALDAAKGLAFLHSDPV-KVIYRDIKASNILLDSDFNAKLSDFGLARDGPMGEQSYVSTRVMGTFGYAAPEYVSTGHLNARSDVYSFGVVLLELLCGRQALDHN 277          
BLAST of FC921346 vs. ExPASy Swiss-Prot
Match: Y1677_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.050e-44
Identity = 91/210 (43.33%), Postives = 137/210 (65.24%), Query Frame = 2
Query:   74 LLSATSNFLAENLIGKGGSSQVYKGCLPDGKELAVKILK-PSEDVIKEFVLEIEIITTLHHKNIISLLGFCFEDNNLLLVYDFLSRGSLEENLHGNKKDPAAFGWSERYKVAMGVAEALEYLHSGSAQRVIHRDVKSSNILLSDDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLTGRKP 700
            L  AT NF  +  +G+G    VY G + DGKE+AVKI   PS  + ++FV E+ +++ +HH+N++ L+G+C E +  +LVY+++  GSL ++LHG+  D     W  R ++A   A+ LEYLH+G    +IHRDVKSSNILL  +   ++SDFGL++      +H++     GT GYL PEY+   ++ +K DVY+FGVVL ELL+G+KP
Sbjct:  601 LEEATDNFSKK--VGRGSFGSVYYGRMKDGKEVAVKITADPSSHLNRQFVTEVALLSRIHHRNLVPLIGYCEEADRRILVYEYMHNGSLGDHLHGSS-DYKPLDWLTRLQIAQDAAKGLEYLHTGCNPSIIHRDVKSSNILLDINMRAKVSDFGLSRQTEEDLTHVSSV-AKGTVGYLDPEYYASQQLTEKSDVYSFGVVLFELLSGKKP 806          
The following BLAST results are available for this feature:
BLAST of FC921346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LRKA2_ARATH9.200e-4543.06Lectin-domain containing receptor kinase A4.2 OS=A... [more]
CRK27_ARATH9.200e-4541.67Cysteine-rich receptor-like protein kinase 27 OS=A... [more]
CRK20_ARATH9.200e-4542.86Putative cysteine-rich receptor-like protein kinas... [more]
Y1105_ARATH1.202e-4444.75Probable receptor-like protein kinase At1g11050 OS... [more]
Y2289_ARATH1.569e-4440.34Probable LRR receptor-like serine/threonine-protei... [more]
Y2197_ARATH1.569e-4442.73Probable protein kinase At2g41970 OS=Arabidopsis t... [more]
SRK6_BRAOE1.569e-4440.87Putative serine/threonine-protein kinase receptor ... [more]
Y4291_ARATH2.050e-4440.43Probable LRR receptor-like serine/threonine-protei... [more]
Y3545_ARATH2.050e-4442.80Probable receptor-like protein kinase At3g55450 OS... [more]
Y1677_ARATH2.050e-4443.33Probable LRR receptor-like serine/threonine-protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32103H07EF RVDevelopN Citrus clementina cDNA clone C32103H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921346 ID=FC921346; Name=FC921346; organism=Citrus clementina; type=EST; length=715bp
GGAACTGCCAAAAGAATTGGAAGGTCTTCATGAGAAATATTCGGCAACTT
GCAGATTGTTCAATTACCAGGATCTCCTCTCAGCAACATCTAATTTCTTG
GCCGAGAATCTGATAGGGAAAGGAGGCAGCAGTCAGGTTTACAAAGGTTG
CCTTCCTGATGGAAAGGAACTTGCAGTGAAAATCTTGAAGCCATCTGAAG
ATGTAATAAAAGAGTTTGTTTTGGAAATTGAGATTATTACTACATTACAT
CACAAAAACATTATTTCCCTTTTGGGATTCTGCTTTGAGGACAATAACCT
GCTCTTGGTTTATGATTTCCTCTCAAGGGGAAGCCTAGAAGAGAACCTTC
ATGGTAATAAGAAAGACCCGGCTGCATTTGGTTGGAGTGAGAGATATAAG
GTGGCTATGGGGGTGGCCGAAGCTCTTGAATATCTCCACAGTGGCAGTGC
TCAACGTGTGATCCACAGGGATGTTAAATCATCAAATATATTACTGTCAG
ATGACTTCGAGCCACAGCTATCTGATTTTGGACTTGCCAAGTGGGCATCA
ACCTCCTCATCTCATATAACCTGCACCGATGTTGCGGGAACCTTTGGCTA
CCTGGCTCCCGAGTACTTCATGTATGGAAAAGTAAATGACAAGATTGATG
TCTATGCATTTGGTGTTGTACTCCTTGAGCTTCTCACTGGAAGGAAGCCC
TATAAGCACGATCAT
back to top