FC921389

Overview
NameFC921389
Unique NameFC921389
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: CSN6_PONAB (COP9 signalosome complex subunit 6 OS=Pongo abelii GN=COPS6 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13
Identity = 50/208 (24.04%), Postives = 104/208 (50.00%), Query Frame = 3
Query:   66 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYL 677
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R     +   ST+A  +  + +A+K L +R++ I  Y+
Sbjct:   42 VALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYV 243          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: CSN6_PIG (COP9 signalosome complex subunit 6 OS=Sus scrofa GN=COPS6 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13
Identity = 50/208 (24.04%), Postives = 104/208 (50.00%), Query Frame = 3
Query:   66 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYL 677
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R     +   ST+A  +  + +A+K L +R++ I  Y+
Sbjct:   37 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYV 238          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: CSN6_MOUSE (COP9 signalosome complex subunit 6 OS=Mus musculus GN=Cops6 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13
Identity = 50/208 (24.04%), Postives = 104/208 (50.00%), Query Frame = 3
Query:   66 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYL 677
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R     +   ST+A  +  + +A+K L +R++ I  Y+
Sbjct:   38 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYV 239          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: CSN6_HUMAN (COP9 signalosome complex subunit 6 OS=Homo sapiens GN=COPS6 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13
Identity = 50/208 (24.04%), Postives = 104/208 (50.00%), Query Frame = 3
Query:   66 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYL 677
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R     +   ST+A  +  + +A+K L +R++ I  Y+
Sbjct:   41 VALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYV 242          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: CSN6_BOVIN (COP9 signalosome complex subunit 6 OS=Bos taurus GN=COPS6 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 50/208 (24.04%), Postives = 104/208 (50.00%), Query Frame = 3
Query:   66 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYL 677
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R     +   ST+A  +  + +A+K L +R++ I  Y+
Sbjct:   38 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELDFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYV 239          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: EI3F2_DROAN (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila ananassae GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.720e-12
Identity = 58/211 (27.49%), Postives = 100/211 (47.39%), Query Frame = 3
Query:   63 KVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPN--PVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLXI 689
            KV++ PLVL  I+D+Y R  KD   +++G LLG S    + ++N + V   ++  D     LD  Y   M  + +    +E V+GW+STG  +  + L +H  +     +  P+ +++D   K   + T+ Y  VE      T+    +F  VP E+A+   E +     LR ++   +   A +V   L  L  +    RE++  LDL +
Sbjct:   10 KVVLQPLVLFQIIDSYERRPKDA-TQIIGTLLGRSNGKEITITNCFTV-LHKEHPDSARIDLDLGYANDMLELNQLTYPQEKVLGWFSTGKSVSRSALLLHDYYSRECSDGQPLHLLVDATLKGQRLSTRLYCGVEMGVPGGTK--GLMFSLVPLEMASDSAEMVA----LRLMQKQNLQPGAKQVGRILPELVQVVEATRELQLRLDLVL 212          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPOR (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus oryzae GN=AO090005001590 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.052e-11
Identity = 61/225 (27.11%), Postives = 107/225 (47.56%), Query Frame = 3
Query:   66 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGS-SFKGT-VDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNY----VPNP-VLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHL--LRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLXIDEKLPLIT 713
            V++HP  L SI+D+  R   D ++RV+G LLG+ S  GT V++  ++AV   E      +   D  Y + M ++  + N KE +VGWY+T  +L      I   +        P+P V + +  +P +  + T+AY                 F+ VP EI   E E+ G+E +   RDV ++  + +  ++     A++ +   +  +  Y++  IDE+ P  T
Sbjct:   30 VVIHPQALFSILDHSLRRNAD-QERVIGTLLGTRSEDGTEVEIRTTFAVGHTETTDQVEV---DMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTFPHPAVHLTVSTEPGK-DVETRAYISAPVGVTAERAADSAAFIPVPYEIRYGETEKSGLESIAAARDV-ESRAANIFTDIEALERAVEEVLGMIDRVSKYVESVIDEEAPAST 248          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPTN (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ATEG_08559 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 61/225 (27.11%), Postives = 106/225 (47.11%), Query Frame = 3
Query:   66 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGS-SFKGT-VDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNY----VPNP-VLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHL--LRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLXIDEKLPLIT 713
            V++ P  L SI+D+  R   D ++RV+G LLG+ S  GT V++ +++AV   E      +   D  Y + M ++  + N KE +VGWY+T  +L      I   +        P+P V + +  +P +  I T+AY                 F+ VP EI   E E+ G+E +   RD ++   + L  ++     A++ +   +  +  Y++  IDE+ P  T
Sbjct:   30 VVIQPQALFSILDHSLRRNAD-QERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEV---DMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTFPHPAVHLTVSTEPGK-DIETRAYISAPVGVTAERAADSAAFIPVPHEIRYGETEKSGLEAIAAARDAEERA-ANLFTDIEALERAIEEVLGMIDRVSRYVESVIDEEAPAST 248          
The following BLAST results are available for this feature:
BLAST of FC921389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CSN6_PONAB1.467e-1324.04COP9 signalosome complex subunit 6 OS=Pongo abelii... [more]
CSN6_PIG1.467e-1324.04COP9 signalosome complex subunit 6 OS=Sus scrofa G... [more]
CSN6_MOUSE1.467e-1324.04COP9 signalosome complex subunit 6 OS=Mus musculus... [more]
CSN6_HUMAN1.467e-1324.04COP9 signalosome complex subunit 6 OS=Homo sapiens... [more]
CSN6_BOVIN1.916e-1324.04COP9 signalosome complex subunit 6 OS=Bos taurus G... [more]
EI3F2_DROAN4.720e-1227.49Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPOR1.052e-1127.11Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPTN5.219e-1127.11Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC32104D07EF RVDevelopN Citrus clementina cDNA clone C32104D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921389 ID=FC921389; Name=FC921389; organism=Citrus clementina; type=EST; length=725bp
GACAGAGAGATTCGAATATGGACGTGATAAAGACGCAGCAAATTTCATCG
AGACCCATAGAGAAGGTCATAGTTCACCCGCTCGTCTTACTAAGCATCGT
CGACAATTACAACCGCGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCG
TCCTCCTCGGTAGCTCCTTCAAAGGCACCGTCGATGTCTCCAACAGCTAC
GCAGTGCCTTTTGAGGAAGATGACAAAGACCCAGGAATATGGTTTCTCGA
CCACAGCTACCATGAATCAATGTATTCAATGTTCAAAAGAATCAATGCCA
AGGAGCATGTCGTAGGTTGGTACAGTACAGGACCCAAGCTACGAGAGAAT
GATCTTGACATTCACCAATTATTTCACAACTATGTCCCAAATCCTGTATT
GGTCATTATTGATGTCCAACCAAAGGAGCTTGGAATACCCACCAAGGCTT
ACTATGATGTTGAGGAGGTTAAAGAGAATGCTACTCAGAAAAGCCAAAAG
GTCTTTGTACACGTGCCATCAGAAATTGCCGCTCATGAAGTCGAAGAAAT
CGGAGTGGAGCACTTGCTAAGGGACGTGAAAGACACCACCATCAGTACAC
TTGCAAATGAGGTCACTGGAAAACTTACAGCCCTAAAGGGTCTGGATGCT
CGTTTGCGTGAGATCCGTGGTTACCTTGACCTTGNTATTGATGAGAAACT
CCCGTTGATCACGAGATACTTTACC
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