FC921407

Overview
NameFC921407
Unique NameFC921407
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length452
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC921407 vs. ExPASy Swiss-Prot
Match: SBP1_DANRE (Selenium-binding protein 1 OS=Danio rerio GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.970e-34
Identity = 62/103 (60.19%), Postives = 78/103 (75.73%), Query Frame = 3 
Query:  144 CCAKGPGYAPPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAXRRFLVLPFLVSGRIYIV 452
            C   GPGY  PLDAM GPRE+++Y+ C+Y  T  +KPDYLATVD +P S ++ KVIHRLP+P + DELHHSGWN+CSSC+ D S  R  L+LP L+S RIY+V
Sbjct:    5 CSGCGPGYKTPLDAMKGPREEIVYLPCIYRNTDIQKPDYLATVDINPQSPNFCKVIHRLPMPNLKDELHHSGWNACSSCFDDPSKRRNRLILPSLISSRIYVV 107
The following BLAST results are available for this feature:
BLAST of FC921407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SBP1_DANRE5.970e-3460.19Selenium-binding protein 1 OS=Danio rerio GN=selen... [more]

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Properties
Property NameValue
Genbank descriptionC32104F04EF RVDevelopN Citrus clementina cDNA clone C32104F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921407 ID=FC921407; Name=FC921407; organism=Citrus clementina; type=EST; length=452bp
GGATTGCGTTCTTATCATCCATTCGCTTCCTATCTTGATCTTTCTTCAAA
GTCTTTGTGTTGTTCTGTCTGTGTTTTTTCTTGTAAGAAATGGCAACTGA
TACTGCGGTGGCTGAACACCGGTCGAGCAATAATGGCCATGGTTGCTGCG
CAAAAGGGCCTGGGTATGCACCCCCACTCGATGCCATGTCTGGTCCTAGA
GAGAAACTTCTCTATGTCACTTGTCTTTACACTGGTACTGGAAGAGAGAA
GCCTGATTACCTAGCGACAGTGGATGCGGATCCTAGCTCTTCTTCTTATT
CAAAAGTTATTCATCGGCTCCCCGTGCCATACATTGGCGATGAACTACAT
CATTCGGGATGGAATTCATGTAGCTCATGCTATGGAGATTCATCTGCTNC
ACGGCGTTTTCTTGTCTTGCCCTTCTTGGTATCTGGTCGTATATACATAG
TT
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