FC921412

Overview
NameFC921412
Unique NameFC921412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: OXSM_HUMAN (3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Homo sapiens GN=OXSM PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.035e-54
Identity = 109/225 (48.44%), Postives = 150/225 (66.67%), Query Frame = 2
Query:   14 KGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFK-NTTGIKINATKSMIGHCLGAAGGL 685
            KG+ K++PFF+P  + NM +  ++I     GPN+++STAC T  +    +   I  G+AD+M+AGGT++ I P+ L GF   RALS  N DP+ A RP+   RDGFVMGEGA VLV+E  EHA++R A I AE LG  ++ DA H+T P  +G G   C+ ++L+DAGV PEE++YINAHATST  GD AE  AIK +FK +   + +++TK   GH LGAAG +
Sbjct:  170 KGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST-NSDPKLACRPFHPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGVQPEEISYINAHATSTPLGDAAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAGAV 393          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: OXSM_BOVIN (3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Bos taurus GN=OXSM PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.722e-53
Identity = 105/223 (47.09%), Postives = 149/223 (66.82%), Query Frame = 2
Query:   14 KGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGI-KINATKSMIGHCLGAAG 679
            KG+ K++PFF+P  + NM S  ++I     GPN+++STAC T  +    +   +  G+AD+M+AGGT++ I P+ L GF   RALS  N DP++A RP+   RDGFVMGEGA VLV+E   HA++RGA + AE +G  ++ DA H+T P   G G   C+ ++++DAG+ PEEV+YINAHATST  GD AE  AIK++FK+   +  +++TK   GH LG AG
Sbjct:  171 KGYSKVSPFFVPKILVNMASGQVSIRHKLKGPNHAVSTACTTGAHAVGDSFRFVAHGDADVMVAGGTDSCISPLSLAGFARARALST-NTDPKSACRPFHPQRDGFVMGEGAAVLVLEEHRHALRRGARVYAEIVGYGLSGDAGHITAPDPGGEGAFRCMAAAVKDAGIQPEEVSYINAHATSTPLGDAAENKAIKQLFKDHAHVLAVSSTKGATGHLLGTAG 392          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: KASM_ARATH (3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Arabidopsis thaliana GN=KAS PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.116e-52
Identity = 108/231 (46.75%), Postives = 151/231 (65.37%), Query Frame = 2
Query:    5 LIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN--TTG-IKINATKSMIGHCLGAAGGL 685
            + EK  R+++PFFIP  + NM S  +++  GF GPN++  TACAT  +    A   I+ G+AD+M+AGGTE++I  + + GF   RALS + N  PQ ASRP+D DRDGFV+GEG+GV+V+E  EHA +RGA I AE  G  ++ DA+H+T P  DG G    +  +L  +G+ P +++Y+NAHATST  GD  E  AIK VF    T+G +  ++TK   GH LGAAG +
Sbjct:  167 ICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLAFSSTKGATGHLLGAAGAV 397          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: CEM1_YEAST (3-oxoacyl-[acyl-carrier-protein] synthase homolog OS=Saccharomyces cerevisiae GN=CEM1 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.543e-46
Identity = 96/226 (42.48%), Postives = 140/226 (61.95%), Query Frame = 2
Query:   20 HRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVF----KNTTGIKINATKSMIGHCLGAAGGL 685
            +++I P+F+P  +TNM +  ++I     G ++S+STACAT N     A N IR G  D+ +AG +E ++ P+ L GF+  ++++         SRP+D  R GFV+GEG G++VMESLEHA KR A II+E +G  ++ DA H+T P ADG G    IE +L+ A + P +V+Y+NAHATSTL GD AE  A+          +  + I++ K  IGH LGAAG +
Sbjct:  150 NKRINPYFVPKILTNMAAGNVSIKFNLRGLSHSVSTACATGNNSIGDAFNFIRLGMQDICVAGASETSLHPLSLAGFIRAKSITTNG-----ISRPFDTQRSGFVLGEGCGMIVMESLEHAQKRNANIISELVGYGLSSDACHITSPPADGNGAKRAIEMALKMARLEPTDVDYVNAHATSTLLGDKAECLAVASALLPGRSKSKPLYISSNKGAIGHLLGAAGAV 370          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: OXSM_SCHPO (Putative 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC887.13c PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.023e-45
Identity = 98/232 (42.24%), Postives = 146/232 (62.93%), Query Frame = 2
Query:    5 LIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKK----VFKNTTGIKINATKSMIGHCLGAAGGL 685
            L + G RK++P  I   + NM +  ++   GF   N++ +TACA   +    A N I+ G AD+++AGG+E+ I P+ + GF   R+LS + ND+P+ ASRP+D +RDGFV+GEG+  LV+E LEHA  R A I AE +G  +  D+YH+T P  +G      ++ SL+ AG+S  +++YINAHATST  GD+AE  AI +    V +N     ++++K  IGH LGAAG +
Sbjct:  128 LNKAGIRKVSPRVISKILINMPAGYISQRYGFTALNHTTTTACAAGCHAIGDAFNFIKLGHADVIIAGGSESCINPLTVAGFSKARSLSTKFNDNPKAASRPFDANRDGFVIGEGSAALVLEELEHAKNRNAHIYAEIVGYGLASDSYHITAPNPNGDAAYYAMKRSLKQAGLSASQLDYINAHATSTKLGDVAESIAITRLLCDVNRNPEAFPVSSSKGSIGHLLGAAGAI 359          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: FAB1_MYCTU (3-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Mycobacterium tuberculosis GN=kasA PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.401e-41
Identity = 87/223 (39.01%), Postives = 130/223 (58.30%), Query Frame = 2
Query:   17 GHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGL 685
            G RK++P  +   + N  +A++ + LG      +  +AC++ +     A   I  G+AD+ + GG E  I  + +  F   RA+S RND+P+ ASRP+DKDRDGFV GE   ++++E+ EHA  RGA  +A  LG  +  DA+HM  P ADG+     +  SLE AG+SP +++++NAH T+T  GD AE NAI+          + A KS +GH +GA G L
Sbjct:  133 GPRKVSPLAVQMIMPNGAAAVIGLQLGARAGVMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAEANAIR--VAGCDQAAVYAPKSALGHSIGAVGAL 353          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: FAB1_MYCBO (3-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Mycobacterium bovis GN=kasA PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.401e-41
Identity = 87/223 (39.01%), Postives = 130/223 (58.30%), Query Frame = 2
Query:   17 GHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGL 685
            G RK++P  +   + N  +A++ + LG      +  +AC++ +     A   I  G+AD+ + GG E  I  + +  F   RA+S RND+P+ ASRP+DKDRDGFV GE   ++++E+ EHA  RGA  +A  LG  +  DA+HM  P ADG+     +  SLE AG+SP +++++NAH T+T  GD AE NAI+          + A KS +GH +GA G L
Sbjct:  133 GPRKVSPLAVQMIMPNGAAAVIGLQLGARAGVMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAEANAIR--VAGCDQAAVYAPKSALGHSIGAVGAL 353          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: NODE_RHIS3 (Nodulation protein E OS=Rhizobium sp. (strain N33) GN=nodE PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.354e-40
Identity = 91/229 (39.74%), Postives = 140/229 (61.14%), Query Frame = 2
Query:    2 ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGL 685
            AL+  G R+     +P A+ +  +  +++ LG  GP + +++ACA++N+   +A + IR G AD+MLAGG++A  +   +  + A R ++     P T  RP+  DR G V+GEGAG+ V+ES EHA  RGA IIAE  G  ++ DA+++  P  +  G  + + + L DAG++ ++V+YINAH T T A D  E  AIK+VF  +   + I++TKSM  HCLGAA  L
Sbjct:  119 ALLLNGARRAGVMDVPKAMPSAAAGQVSMSLGLRGPVFGVTSACASANHAIASAVDQIRCGRADVMLAGGSDAPFVFCVVKAWEAMRVIA-----PDTC-RPFSSDRRGLVLGEGAGMAVLESYEHATARGATIIAEIAGIGLSADAFNLVSPAVE--GPEAAMRACLADAGLNVQDVDYINAHGTGTKANDRMETEAIKRVFGGHANSMSISSTKSMHAHCLGAASAL 339          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: FAB1_MYCLE (3-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Mycobacterium leprae GN=kasA PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.299e-40
Identity = 87/223 (39.01%), Postives = 129/223 (57.85%), Query Frame = 2
Query:   17 GHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGL 685
            G RK++P  +   + N  +A + + LG      +  +AC++ +     A   I  G+AD+ + GG E  I  + +  F   RA+S RNDDP+ ASRP+DK+RDGFV GE   ++++E+ EHA  RGA  +A  LG  +  DA+HM  P ADG+     +  SLE AG+S ++V+++NAH T+T  GD AE NAI+          + A KS +GH +GA G L
Sbjct:  133 GPRKVSPLAVQMIMPNGAAATVGLQLGACAGVMTPVSACSSGSEAIAHAWRQIIMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRNDDPEGASRPFDKNRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSAKDVDHVNAHGTATPIGDSAEANAIR--VAGCEQAAVYAPKSALGHSIGAVGAL 353          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: NOE4_RHIME (Nodulation protein E OS=Rhizobium meliloti GN=nodE PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.554e-38
Identity = 87/212 (41.04%), Postives = 133/212 (62.74%), Query Frame = 2
Query:   53 AITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGL 685
            A+ +  +  +++ LG  GP + +++AC+++N+   +A + I+ G AD+MLAGG++A ++ I L  + A RAL+     P T  RP+   R G V+GEGAG+ V+ES EHA  RGA I+AE  G  ++ DA+H+T P     G  S + + L DAG++ E+V+Y+NAH T T A D  E  AIK+VF  +   + I++TKS   HC+GAA  L
Sbjct:  135 AMPSAAACQVSMSLGLRGPVFGVTSACSSANHAIASAVDQIKCGRADVMLAGGSDAPLVWIVLKAWEAMRALA-----PDTC-RPFSAGRKGVVLGEGAGMAVLESYEHATARGATILAEVAGVGLSADAFHITAPAVH--GPESAMRACLADAGLNAEDVDYLNAHGTGTKANDQNETTAIKRVFGDHAYSMSISSTKSTHAHCIGAASAL 338          
The following BLAST results are available for this feature:
BLAST of FC921412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
OXSM_HUMAN2.035e-5448.443-oxoacyl-[acyl-carrier-protein] synthase, mitocho... [more]
OXSM_BOVIN1.722e-5347.093-oxoacyl-[acyl-carrier-protein] synthase, mitocho... [more]
KASM_ARATH1.116e-5246.753-oxoacyl-[acyl-carrier-protein] synthase, mitocho... [more]
CEM1_YEAST4.543e-4642.483-oxoacyl-[acyl-carrier-protein] synthase homolog ... [more]
OXSM_SCHPO5.023e-4542.24Putative 3-oxoacyl-[acyl-carrier-protein] synthase... [more]
FAB1_MYCTU4.401e-4139.013-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Myc... [more]
FAB1_MYCBO4.401e-4139.013-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Myc... [more]
NODE_RHIS36.354e-4039.74Nodulation protein E OS=Rhizobium sp. (strain N33)... [more]
FAB1_MYCLE8.299e-4039.013-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Myc... [more]
NOE4_RHIME4.554e-3841.04Nodulation protein E OS=Rhizobium meliloti GN=nodE... [more]

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Properties
Property NameValue
Genbank descriptionC32104F10EF RVDevelopN Citrus clementina cDNA clone C32104F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921412 ID=FC921412; Name=FC921412; organism=Citrus clementina; type=EST; length=686bp
GGCTCTAATAGAAAAAGGTCATAGAAAAATAACCCCGTTCTTCATTCCGT
ATGCTATAACAAACATGGGTTCTGCTTTGCTTGCAATTGACCTTGGCTTC
ATGGGTCCAAATTATTCAATTTCAACTGCCTGTGCAACCTCCAATTATTG
CTTTTATGCTGCCGCCAATCACATCCGTCGAGGAGAGGCTGATTTGATGC
TTGCTGGTGGAACTGAAGCAGCCATTATTCCTATTGGATTGGGTGGTTTT
GTTGCATGTAGAGCATTGTCTCAGAGAAATGATGACCCACAAACTGCTTC
TAGGCCATGGGACAAAGATCGGGATGGCTTTGTCATGGGAGAAGGTGCTG
GAGTATTGGTGATGGAGAGCTTGGAACATGCAATGAAACGAGGTGCACCG
ATCATAGCAGAGTACTTAGGGGGTGCTGTTAATTGTGATGCTTATCATAT
GACTGACCCCAGAGCTGATGGACTTGGAGTGTCTTCATGCATTGAGAGCA
GCCTTGAAGATGCTGGTGTGTCACCTGAGGAGGTCAACTACATAAATGCT
CACGCAACTTCCACTTTAGCTGGTGACCTGGCTGAGATAAATGCTATTAA
AAAGGTGTTCAAGAACACCACAGGGATCAAAATCAATGCCACGAAGTCTA
TGATAGGGCACTGCCTTGGTGCAGCTGGNGGTTTGG
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