FC921412

Overview
NameFC921412
Unique NameFC921412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: FABB_ECOLI (3-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Escherichia coli (strain K12) GN=fabB PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.038e-35
Identity = 92/223 (41.26%), Postives = 131/223 (58.74%), Query Frame = 2
Query:   14 KGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAG 679
            +G + + P+ +  A+ +  SA LA      G NYSIS+ACATS +C   A   I+ G+ D++ AGG E     +    F A  ALS + ND P+ ASR +D  RDGFV+  G G++V+E LEHA+ RGA I AE +G     D   M  P   G G   C++ ++   GV    ++Y+N+H TST  GD+ E+ AI++VF + +   I+ATK+M GH LGAAG
Sbjct:  124 RGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVD-TPIDYLNSHGTSTPVGDVKELAAIREVFGDKSP-AISATKAMTGHSLGAAG 339          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: FABB_ECOL6 (3-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Escherichia coli O6 GN=fabB PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.038e-35
Identity = 92/223 (41.26%), Postives = 131/223 (58.74%), Query Frame = 2
Query:   14 KGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAG 679
            +G + + P+ +  A+ +  SA LA      G NYSIS+ACATS +C   A   I+ G+ D++ AGG E     +    F A  ALS + ND P+ ASR +D  RDGFV+  G G++V+E LEHA+ RGA I AE +G     D   M  P   G G   C++ ++   GV    ++Y+N+H TST  GD+ E+ AI++VF + +   I+ATK+M GH LGAAG
Sbjct:  124 RGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVD-TPIDYLNSHGTSTPVGDVKELAAIREVFGDKSP-AISATKAMTGHSLGAAG 339          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: FABB_HAEIN (3-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Haemophilus influenzae GN=fabB PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.791e-34
Identity = 90/223 (40.36%), Postives = 125/223 (56.05%), Query Frame = 2
Query:   14 KGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAG 679
            +G + I P+ +   + +  SA LA      G NYS+S+ACATS +C   A   I+ G+ D++ AGG E          F A  A+S + N+ P+ ASR +D +RDGFV+  G  V+V+E LEHA+ RGA I AE +G     D Y M  P   G G   C++ ++         ++YIN H TST  GD+ E+ AIK VF +     I++TKSM GH LGAAG
Sbjct:  123 RGVKAIGPYAVTKTMASSVSACLATPYKIRGVNYSMSSACATSAHCIGHAVELIQLGKQDVVFAGGAEELSWECATE-FDAMGAVSTKYNETPEKASRAYDANRDGFVIAGGGAVVVVEELEHALARGAKIYAEIVGYGATSDGYDMVAP--SGEGAERCMKQAMATVDT---PIDYINVHGTSTPVGDVKELGAIKNVFGDKIP-AISSTKSMTGHSLGAAG 338          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: FAB2_MYCTU (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Mycobacterium tuberculosis GN=kasB PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.055e-34
Identity = 79/225 (35.11%), Postives = 122/225 (54.22%), Query Frame = 2
Query:   14 KGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACR-ALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGL 685
            +G + ++P  +   + N  +A + ++        +  +ACA+       A   I  GEAD  + GG E  I  + + GF   R  +S  NDDP  A RP+D+DRDGFV GEG  +L++E+ EHA  RGA I+A  +G ++  D +HM  P  +G      I  +++ AG++P +++++NAHAT T  GDLAE  AI           + A KS +GH +GA G +
Sbjct:  131 RGMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTPVSACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAGLAPGDIDHVNAHATGTQVGDLAEGRAINNALGGNRP-AVYAPKSALGHSVGAVGAV 354          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: FAB2_MYCBO (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Mycobacterium bovis GN=kasB PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.055e-34
Identity = 79/225 (35.11%), Postives = 122/225 (54.22%), Query Frame = 2
Query:   14 KGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACR-ALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGL 685
            +G + ++P  +   + N  +A + ++        +  +ACA+       A   I  GEAD  + GG E  I  + + GF   R  +S  NDDP  A RP+D+DRDGFV GEG  +L++E+ EHA  RGA I+A  +G ++  D +HM  P  +G      I  +++ AG++P +++++NAHAT T  GDLAE  AI           + A KS +GH +GA G +
Sbjct:  131 RGMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTPVSACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAGLAPGDIDHVNAHATGTQVGDLAEGRAINNALGGNRP-AVYAPKSALGHSVGAVGAV 354          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: FABB_BUCBP (3-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=fabB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.887e-34
Identity = 86/220 (39.09%), Postives = 131/220 (59.55%), Query Frame = 2
Query:   23 RKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAG 679
            + ++P+ +  ++T+  SA L+      G NYSIS+ACATS +C   A   I+ G+ DL+ AGG E     +    F +  ALS   N  P  +SR +D  RDGFV+  GAG+LV+E L +A+ R A I AE +G   + D Y++  P   G G   C+  ++ +     E ++Y+N H+TST  GDL E+NAI++VF+ T+   +++TKS+ GH LGA+G
Sbjct:  128 KSVSPYTVIKSMTSSISACLSTLFKIQGVNYSISSACATSAHCIGNAMELIQLGKQDLIFAGGGEELSWELACA-FDSMGALSTMYNSQPILSSRVFDYYRDGFVISGGAGILVVEELNYALSRSAHIYAEIVGYGTSSDGYNVVVP--SGNGAMRCMNIAMSNI---QEPIDYLNVHSTSTKIGDLIELNAIQQVFRKTSIPILSSTKSITGHSLGASG 341          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: FABB_BUCAI (3-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=fabB PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.524e-33
Identity = 93/225 (41.33%), Postives = 126/225 (56.00%), Query Frame = 2
Query:    8 IEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAG 679
            I KG   I+P+     + +  SA L+      G  YSIS+ACATS +C   A   I+ G  DL+ AGG E   + + +  F A RALS   N+DP+ ASR +D  RDGFV+  GAG+LV+E L  A+ R A I AE +G A   D  ++  P  D  G   C+  + +   +    ++Y+N H T T  GDL E+ AI+KVF N     I+ATKSM GH LGA+G
Sbjct:  126 ISKG---ISPYLAVKTMPSGISACLSTLFKIYGVTYSISSACATSAHCIGNAFELIQFGRQDLIFAGGGEEISLELAMQ-FDAMRALSTCFNNDPKKASRVYDVYRDGFVISGGAGMLVIEELNSALSRSAYIYAEIIGYAATSDGSNIVVPSGD--GAIRCMNLARKGKNI---PIDYLNVHGTGTKIGDLIELEAIRKVFLNEKKPMISATKSMTGHGLGASG 341          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: KAS1_STRVN (Granaticin polyketide putative beta-ketoacyl synthase 1 OS=Streptomyces violaceoruber GN=gra-orf1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.189e-32
Identity = 81/228 (35.53%), Postives = 123/228 (53.95%), Query Frame = 2
Query:    5 LIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKK-VFKNTTGIKINATKSMIGHCLGAAGGL 685
            L++  H  ++P    Y    +  A +A   G  GP   +S  C +       A    R G AD+++AG  +  + PI +  F A +A + RNDDP  ASRP+D  R+GFV+ EGA + V+E  E A +RGA I AE  G A    AYHMT  + DG  ++  I ++L++A +    V+Y+NAH + T   D  E  A K+ + ++   + +++ KSM GH LGA G +
Sbjct:  129 LVDPAH--LSPMMFDYLSPGVMPAEVAWAAGAEGPVTMVSDGCTSGLDSVGYAVQGTREGSADVVVAGAADTPVSPIVVACFDAIKATTPRNDDPAHASRPFDGTRNGFVLAEGAAMFVLEEYEAAQRRGAHIYAEVGGYATRSQAYHMTGLKKDGREMAESIRAALDEARLDRTAVDYVNAHGSGTKQNDRHETAAFKRSLGEHAYAVPVSSIKSMGGHSLGAIGSI 354          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: FAB2_MYCLE (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Mycobacterium leprae GN=kasB PE=3 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.189e-32
Identity = 76/225 (33.78%), Postives = 122/225 (54.22%), Query Frame = 2
Query:   14 KGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACR-ALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGL 685
            +G + ++P  +   + N  +A + ++        +  +ACA+ +     A   I  GEAD  + GG E  I  + + GF   R  +S +ND+P  A RP+D+DRDGFV GE   ++++E+ + A  R A I+A  +G ++  D +HM  P  +G      I  ++  AG+SP +++++NAHAT T  GDLAE  AI K   N     + A KS +GH +GA G +
Sbjct:  134 RGMKAVSPLAVQKYMPNGAAAAVGLEHHAKAGVMTPVSACASGSEAIAHAWQQIVLGEADSAICGGVETKIEAVPIAGFSQMRIVMSTKNDNPAGACRPFDRDRDGFVFGEAGALMLIETEDSAKARSANILARIMGASITSDGFHMVAPDPNGERAGHAIARAVHLAGLSPSDIDHVNAHATGTQVGDLAEAKAINKALCNNRP-AVYAPKSALGHSVGAVGAV 357          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: FABB_BUCAP (3-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=fabB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.420e-31
Identity = 87/223 (39.01%), Postives = 122/223 (54.71%), Query Frame = 2
Query:   14 KGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAG 679
            +G   ++P+    A+ +  SA L+      G NYSIS+ACATS +C   A   I+ G+ DL+ AGG E     +    F A +ALS   N +P  +SR +D +RDGFV+  G G++V+E L  A+ R A I AE +G A   D   M  P  D  G   C+  + +   +    ++Y+N H TST  GDL E+ AIKK F +     I+ATKSM GH LG +G
Sbjct:  125 RGLNSVSPYIAIKAMNSGISACLSTLFKIYGVNYSISSACATSGHCIGNAFELIKFGKQDLIFAGGGEEVSWELAYE-FDAMKALSSNFNKNPTKSSRVYDVNRDGFVISGGGGIIVIEELNCALSRSAHIYAEIIGYAATSDGKDMVVPSGD--GAVRCMNLAKKQNKML--FIDYLNVHGTSTKIGDLIELEAIKKSFFHEKKPMISATKSMTGHALGVSG 342          
The following BLAST results are available for this feature:
BLAST of FC921412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
FABB_ECOLI8.038e-3541.263-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Esc... [more]
FABB_ECOL68.038e-3541.263-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Esc... [more]
FABB_HAEIN1.791e-3440.363-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Hae... [more]
FAB2_MYCTU3.055e-3435.113-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Myc... [more]
FAB2_MYCBO3.055e-3435.113-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Myc... [more]
FABB_BUCBP8.887e-3439.093-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Buc... [more]
FABB_BUCAI7.524e-3341.333-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Buc... [more]
KAS1_STRVN2.189e-3235.53Granaticin polyketide putative beta-ketoacyl synth... [more]
FAB2_MYCLE2.189e-3233.783-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Myc... [more]
FABB_BUCAP2.420e-3139.013-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Buc... [more]

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Properties
Property NameValue
Genbank descriptionC32104F10EF RVDevelopN Citrus clementina cDNA clone C32104F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921412 ID=FC921412; Name=FC921412; organism=Citrus clementina; type=EST; length=686bp
GGCTCTAATAGAAAAAGGTCATAGAAAAATAACCCCGTTCTTCATTCCGT
ATGCTATAACAAACATGGGTTCTGCTTTGCTTGCAATTGACCTTGGCTTC
ATGGGTCCAAATTATTCAATTTCAACTGCCTGTGCAACCTCCAATTATTG
CTTTTATGCTGCCGCCAATCACATCCGTCGAGGAGAGGCTGATTTGATGC
TTGCTGGTGGAACTGAAGCAGCCATTATTCCTATTGGATTGGGTGGTTTT
GTTGCATGTAGAGCATTGTCTCAGAGAAATGATGACCCACAAACTGCTTC
TAGGCCATGGGACAAAGATCGGGATGGCTTTGTCATGGGAGAAGGTGCTG
GAGTATTGGTGATGGAGAGCTTGGAACATGCAATGAAACGAGGTGCACCG
ATCATAGCAGAGTACTTAGGGGGTGCTGTTAATTGTGATGCTTATCATAT
GACTGACCCCAGAGCTGATGGACTTGGAGTGTCTTCATGCATTGAGAGCA
GCCTTGAAGATGCTGGTGTGTCACCTGAGGAGGTCAACTACATAAATGCT
CACGCAACTTCCACTTTAGCTGGTGACCTGGCTGAGATAAATGCTATTAA
AAAGGTGTTCAAGAACACCACAGGGATCAAAATCAATGCCACGAAGTCTA
TGATAGGGCACTGCCTTGGTGCAGCTGGNGGTTTGG
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