FC921412

Overview
NameFC921412
Unique NameFC921412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: PHAS_MYCTA (Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=pks2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 57/208 (27.40%), Postives = 89/208 (42.79%), Query Frame = 2
Query:   62 NMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGL 685
            +M S  +A  +   GP  ++ TAC++     + A   +  GE+D+ LAGG    + P       A   LS     P    R +D   DGFV GEG  V+V++ L  A+  G  I+A   G + N D + +           +   ++L   GV    V  + AH   T  GD  E  ++ +V+       + + K+  GH    AG L
Sbjct:  173 SMASGRVAYAMRLHGPAITVDTACSSGLTAVHMACRSLHEGESDVALAGGVALMLEPRKAAAGSALGMLS-----PTGRCRAFDVAADGFVSGEGCAVVVLKRLPDALADGDRILAVIRGTSANQDGHTVNIATPSQPAQVAAYRAALAAGGVDAATVGMVEAHGPGTPIGDPIEYASVSEVYGVDGPCALASVKTNFGHTQSTAGVL 375          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: PHAS_MYCBP (Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=pks2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 57/208 (27.40%), Postives = 89/208 (42.79%), Query Frame = 2
Query:   62 NMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGL 685
            +M S  +A  +   GP  ++ TAC++     + A   +  GE+D+ LAGG    + P       A   LS     P    R +D   DGFV GEG  V+V++ L  A+  G  I+A   G + N D + +           +   ++L   GV    V  + AH   T  GD  E  ++ +V+       + + K+  GH    AG L
Sbjct:  173 SMASGRVAYAMRLHGPAITVDTACSSGLTAVHMACRSLHEGESDVALAGGVALMLEPRKAAAGSALGMLS-----PTGRCRAFDVAADGFVSGEGCAVVVLKRLPDALADGDRILAVIRGTSANQDGHTVNIATPSQPAQVAAYRAALAAGGVDAATVGMVEAHGPGTPIGDPIEYASVSEVYGVDGPCALASVKTNFGHTQSTAGVL 375          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: PHAS_MYCBO (Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium bovis GN=pks2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 57/208 (27.40%), Postives = 89/208 (42.79%), Query Frame = 2
Query:   62 NMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGL 685
            +M S  +A  +   GP  ++ TAC++     + A   +  GE+D+ LAGG    + P       A   LS     P    R +D   DGFV GEG  V+V++ L  A+  G  I+A   G + N D + +           +   ++L   GV    V  + AH   T  GD  E  ++ +V+       + + K+  GH    AG L
Sbjct:  173 SMASGRVAYAMRLHGPAITVDTACSSGLTAVHMACRSLHEGESDVALAGGVALMLEPRKAAAGSALGMLS-----PTGRCRAFDVAADGFVSGEGCAVVVLKRLPDALADGDRILAVIRGTSANQDGHTVNIATPSQPAQVAAYRAALAAGGVDAATVGMVEAHGPGTPIGDPIEYASVSEVYGVDGPCALASVKTNFGHTQSTAGVL 375          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: PKS3_DICDI (Probable polyketide synthase 3 OS=Dictyostelium discoideum GN=pks3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.240e-15
Identity = 56/204 (27.45%), Postives = 92/204 (45.10%), Query Frame = 2
Query:   98 FMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTD------PRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNT----TGIKINATKSMIGHCLGAAG 679
            F GP+ +I TAC++S+         I  G + + + GGT           F     LS+         + +D + DG+V  E  GVL+++ L  A+  G  +     G + N D    +D      P A     +  I+ +L    ++ ++V+Y+ AH T T  GD  E+  I  +FK+       + I + KSMIGHC  ++G
Sbjct:  198 FHGPSITIDTACSSSSNAVVLGCKSIIEGNSKMSIVGGTSLIFDANTPKSFSYMNMLSKDG-----RCKSFDANADGYVKSECIGVLLLKDLNQAIIDGDRVYCVIKGTSSNVDGNGYSDKSNFYSPSAQSQAEN--IKMALSSGNINAKDVDYVEAHGTGTPVGDPIEVEGISSIFKDNHSKENPLLIGSFKSMIGHCEASSG 394          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: PKS19_DICDI (Probable polyketide synthase 19 OS=Dictyostelium discoideum GN=pks19 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 50/210 (23.81%), Postives = 92/210 (43.81%), Query Frame = 2
Query:   80 LAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDP----RADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTT------GIKINATKSMIGHCLGAAG 679
            L+      GP+ +I TAC++S          I+ G ++L + GG    + P     F     LS++        +P+D + DG++  E  G+++++ L  A++ G  I       + N D   + D            S  I+ +L+ A +   +++++  H T T  GD  E+  +     ++T       + I + KS IGHC  A+G
Sbjct:  159 LSFSYDIRGPSMTIDTACSSSLNSITMGFQSIQNGTSNLSIVGGASLLLDPYVSKSFSFLNMLSKKGK-----CKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSTTSTPSKPLLIGSLKSNIGHCEAASG 363          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: PKS37_DICDI (Probable polyketide synthase 37 OS=Dictyostelium discoideum GN=stlB PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 62/227 (27.31%), Postives = 102/227 (44.93%), Query Frame = 2
Query:   26 KITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDA---YHMTDPRADGLGVSSCIESSLEDAG--VSPEEVNYINAHATSTLAGDLAEINAIKK----VFKNTTGIKINATKSMIGHCLGAAG 679
            +I  F  P   ++  S  L+  L   GP+ +++TAC+ S    +     +  GE++L + GG      P+    F     L+Q  D        +D    G+V  EG G+L+++ L  A++    I +  L  A N +      +T PR+  L     I+  L ++    S +++ Y   H T T  GDL EI AI K    +  +   + I + K+ IGH  GA+G
Sbjct:  163 EINQFTTPGTNSSFLSNRLSYFLDVNGPSMTVNTACSASMVAIHLGLQSLWNGESELSMVGGVNIISSPLQSLDFGKAGLLNQETDG---RCYSFDPRASGYVRSEGGGILLLKPLSAALRDNDEIYSLLLNSANNSNGKTPTGITSPRS--LCQEKLIQQLLRESSDQFSIDDIGYFECHGTGTQMGDLNEITAIGKSIGMLKSHDDPLIIGSVKASIGHLEGASG 384          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: KAS2_STRGA (Tetracenomycin C polyketide putative beta-ketoacyl synthase 2 OS=Streptomyces glaucescens GN=tcmL PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 54/175 (30.86%), Postives = 82/175 (46.86%), Query Frame = 2
Query:  161 AANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGL 685
            AA  +R+G  +  L GG EA++ P GL   +    LS+  D P  A  P+D    G+V GEG  +LV E  + A +R A  +   + G  +   +          G +  I  +LE+A V+PE+V+ + A A    A D AE  A+ +VF     + + A K+M G        L
Sbjct:  175 AARLLRKGTLNTALTGGCEASLCPWGLVAQIPSGFLSEATD-PHDAYLPFDARAAGYVPGEGGAMLVAERADSARERDAATVYGRIAG--HASTFDARPGTGRPTGPARAIRLALEEARVAPEDVDVVYADAAGVPALDRAEAEALAEVF-GPGAVPVTAPKTMTGRLYAGGAAL 345          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: PKS14_DICDI (Probable polyketide synthase 14 OS=Dictyostelium discoideum GN=pks14 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 60/211 (28.44%), Postives = 96/211 (45.50%), Query Frame = 2
Query:   98 FMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPR--------ADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFK-----NTT----GIKINATKSMIGHCLGAAG 679
            F G + +I TAC++S          I+ G ++L + GG  +         F     LS+      T    +D+  DGFV GEG  +LV++SL+ ++  G  I     G + N D   + D +        +    V++   S+  +  V  E++ YI AH T T  GD  E++ + +VFK     N+T     + I + KS IGH   A+G
Sbjct:  178 FSGESITIDTACSSSLNAIRLGYQSIKSGFSNLSIVGGVNSLFETNSSKSFSYLNMLSKSQGKCMT----FDESADGFVRGEGVALLVLKSLKQSVADGNNIYCVIKGASSNVDGNGLKDKQNFYSPSSISQADNVNNAFSST--NGTVKLEDIVYIEAHGTGTPTGDPVELDGMSRVFKTHSSNNSTLSQQPLLIGSIKSSIGHLEAASG 382          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: PKSR_BACSU (Polyketide synthase pksR OS=Bacillus subtilis GN=pksR PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 51/191 (26.70%), Postives = 89/191 (46.60%), Query Frame = 2
Query:   29 ITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIK 601
            + P  IP  I+       A+D+   GP+     AC+++    + A   IR GE +  + G     + P G  GF +   LS++       ++ +  D +GFV  EGAGVL+++ L+ A++    I +   G  V+     M+    +  G+   +  + + A + P+ V YI AH  ++   D  EI A+K
Sbjct: 1654 VVPSLIPNRIS------YALDV--KGPSEYYEAACSSALVALHRAIQSIRNGECEQAIVGAVNLLLSPKGFIGFDSMGYLSEKGQ-----AKSFQADANGFVRSEGAGVLIIKPLQKAIEDSDHIYSVIKGSGVSHGGRGMSLHAPNPAGMKDAMLKAYQGAQIDPKTVTYIEAHGIASPLADAIEIEALK 1831          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: PKS39_DICDI (Probable polyketide synthase 39 OS=Dictyostelium discoideum GN=pks39 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13
Identity = 53/215 (24.65%), Postives = 90/215 (41.86%), Query Frame = 2
Query:   80 LAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDA------YHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTG-------IKINATKSMIGH---CLGAA 676
            +     F G N +I TAC++S+       N I+  ++++ + GG    + P     F     LS     P      +  D DGFV  EG G++V++ L+ A+K    I     G + N D       ++     +    +   I+S+  +  ++  +++Y   H T T  GD  E+  I + F N          + + + KS IGH   C G A
Sbjct:  164 IGFSFDFRGENLTIDTACSSSSNAINCGYNSIKSNKSNVSIVGGVNFILNPYISKSFTQLDMLS-----PTGKCHTFSSDADGFVRSEGVGIVVLKKLKDAIKDSNNIYCVIKGSSSNIDGNFDKLNFYSPSKLSQCENIKLAIKST--NGQINESDIDYCETHGTGTPTGDPIELEGISRAFNNKASTTNNNKQVLVGSFKSNIGHTEACSGVA 371          
The following BLAST results are available for this feature:
BLAST of FC921412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
PHAS_MYCTA7.075e-1527.40Phthioceranic/hydroxyphthioceranic acid synthase O... [more]
PHAS_MYCBP7.075e-1527.40Phthioceranic/hydroxyphthioceranic acid synthase O... [more]
PHAS_MYCBO7.075e-1527.40Phthioceranic/hydroxyphthioceranic acid synthase O... [more]
PKS3_DICDI9.240e-1527.45Probable polyketide synthase 3 OS=Dictyostelium di... [more]
PKS19_DICDI5.989e-1423.81Probable polyketide synthase 19 OS=Dictyostelium d... [more]
PKS37_DICDI1.022e-1327.31Probable polyketide synthase 37 OS=Dictyostelium d... [more]
KAS2_STRGA1.743e-1330.86Tetracenomycin C polyketide putative beta-ketoacyl... [more]
PKS14_DICDI2.276e-1328.44Probable polyketide synthase 14 OS=Dictyostelium d... [more]
PKSR_BACSU3.882e-1326.70Polyketide synthase pksR OS=Bacillus subtilis GN=p... [more]
PKS39_DICDI5.070e-1324.65Probable polyketide synthase 39 OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionC32104F10EF RVDevelopN Citrus clementina cDNA clone C32104F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921412 ID=FC921412; Name=FC921412; organism=Citrus clementina; type=EST; length=686bp
GGCTCTAATAGAAAAAGGTCATAGAAAAATAACCCCGTTCTTCATTCCGT
ATGCTATAACAAACATGGGTTCTGCTTTGCTTGCAATTGACCTTGGCTTC
ATGGGTCCAAATTATTCAATTTCAACTGCCTGTGCAACCTCCAATTATTG
CTTTTATGCTGCCGCCAATCACATCCGTCGAGGAGAGGCTGATTTGATGC
TTGCTGGTGGAACTGAAGCAGCCATTATTCCTATTGGATTGGGTGGTTTT
GTTGCATGTAGAGCATTGTCTCAGAGAAATGATGACCCACAAACTGCTTC
TAGGCCATGGGACAAAGATCGGGATGGCTTTGTCATGGGAGAAGGTGCTG
GAGTATTGGTGATGGAGAGCTTGGAACATGCAATGAAACGAGGTGCACCG
ATCATAGCAGAGTACTTAGGGGGTGCTGTTAATTGTGATGCTTATCATAT
GACTGACCCCAGAGCTGATGGACTTGGAGTGTCTTCATGCATTGAGAGCA
GCCTTGAAGATGCTGGTGTGTCACCTGAGGAGGTCAACTACATAAATGCT
CACGCAACTTCCACTTTAGCTGGTGACCTGGCTGAGATAAATGCTATTAA
AAAGGTGTTCAAGAACACCACAGGGATCAAAATCAATGCCACGAAGTCTA
TGATAGGGCACTGCCTTGGTGCAGCTGGNGGTTTGG
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